Query 537021.9.peg.218_1 Match_columns 39 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 16:09:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_218.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1p9sa_ b.47.1.4 (A:) Coronavi 4.4 68 0.0049 13.4 -0.4 15 6-20 134-148 (300) 2 d1lvoa_ b.47.1.4 (A:) Coronavi 4.3 69 0.005 13.3 -0.4 15 6-20 134-148 (299) 3 d2duca1 b.47.1.4 (A:2-301) Cor 4.3 70 0.0051 13.3 -0.4 15 6-20 134-148 (300) 4 d1dfca2 b.42.5.1 (A:1141-1259) 2.5 1.7E+02 0.013 11.3 0.2 11 25-35 6-16 (119) 5 d1q9ha_ b.29.1.10 (A:) Cellobi 1.8 2.6E+02 0.019 10.4 2.1 13 21-33 297-309 (435) 6 d1yl7a1 c.2.1.3 (A:2-105,A:215 1.8 1.3E+02 0.0092 12.0 -1.5 10 13-22 8-17 (135) 7 d1eg1a_ b.29.1.10 (A:) Cellobi 1.7 2.8E+02 0.02 10.3 2.1 17 17-33 259-275 (371) 8 d1mkya2 c.37.1.8 (A:173-358) P 1.6 2.3E+02 0.016 10.8 -0.5 23 7-29 5-27 (186) 9 d2v3ia1 b.29.1.10 (A:1-434) Ce 1.5 3E+02 0.022 10.1 1.4 7 27-33 300-306 (434) 10 d2fyui1 d.184.1.3 (I:1-57) Ubi 1.5 3.1E+02 0.022 10.1 0.6 8 16-23 1-8 (57) No 1 >d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Human coronavirus 229E [TaxId: 11137]} Probab=4.41 E-value=68 Score=13.37 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=11.9 Q ss_pred EEECCEEEECCCCCC Q ss_conf 973103531135421 Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39) Q Consensus 6 tiedsflygkmgsta 20 (39) ||..|||-|.-||.. T Consensus 134 TIkgSFl~GaCGSvG 148 (300) T d1p9sa_ 134 TIRGSFINGACGSPG 148 (300) T ss_dssp CBCCCCCTTCTTCEE T ss_pred EEEEEEECCCCCCCC T ss_conf 078888746578883 No 2 >d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Transmissible gastroenteritis virus [TaxId: 11149]} Probab=4.33 E-value=69 Score=13.32 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=11.9 Q ss_pred EEECCEEEECCCCCC Q ss_conf 973103531135421 Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39) Q Consensus 6 tiedsflygkmgsta 20 (39) ||..|||-|.-||.. T Consensus 134 TIrgSFl~GaCGSvG 148 (299) T d1lvoa_ 134 TIKGSFIAGTCGSVG 148 (299) T ss_dssp CBCCCCCTTCTTCEE T ss_pred CEEEEEECCCCCCCC T ss_conf 088888746578983 No 3 >d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]} Probab=4.28 E-value=70 Score=13.29 Aligned_cols=15 Identities=53% Similarity=0.771 Sum_probs=12.0 Q ss_pred EEECCEEEECCCCCC Q ss_conf 973103531135421 Q 537021.9.peg.2 6 TIEDSFLYGKMGSTA 20 (39) Q Consensus 6 tiedsflygkmgsta 20 (39) ||..|||-|.-||.. T Consensus 134 TIkgSFl~GaCGSvG 148 (300) T d2duca1 134 TIKGSFLNGSCGSVG 148 (300) T ss_dssp CBCCCCCTTCTTCEE T ss_pred CEEEEEECCCCCCCC T ss_conf 078888746578883 No 4 >d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.54 E-value=1.7e+02 Score=11.33 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=4.1 Q ss_pred EEEEEEEEEEE Q ss_conf 01223689999 Q 537021.9.peg.2 25 SVINRRYVQIS 35 (39) Q Consensus 25 svinrryvqis 35 (39) ||..+||+..| T Consensus 6 Sv~rkrYahls 16 (119) T d1dfca2 6 SVTRKRYAHLS 16 (119) T ss_dssp ETTTCCEEEEC T ss_pred CCCCEEEEEEC T ss_conf 15620679957 No 5 >d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId: 68825]} Probab=1.82 E-value=2.6e+02 Score=10.43 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=9.1 Q ss_pred CCCCEEEEEEEEE Q ss_conf 1210012236899 Q 537021.9.peg.2 21 ARSTSVINRRYVQ 33 (39) Q Consensus 21 arstsvinrryvq 33 (39) .-.-+-|.|.||| T Consensus 297 ~G~LteIrR~YVQ 309 (435) T d1q9ha_ 297 TGTLSEIKRFYIQ 309 (435) T ss_dssp TSCEEEEEEEEEE T ss_pred CCCEEEEEEEEEE T ss_conf 5213058899988 No 6 >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=1.78 E-value=1.3e+02 Score=12.03 Aligned_cols=10 Identities=50% Similarity=0.787 Sum_probs=0.0 Q ss_pred EECCCCCCCC Q ss_conf 3113542112 Q 537021.9.peg.2 13 YGKMGSTAAR 22 (39) Q Consensus 13 ygkmgstaar 22 (39) +||||+..++ T Consensus 8 ~GrMG~~i~~ 17 (135) T d1yl7a1 8 KGKVGATMVR 17 (135) T ss_dssp TSHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 9877999999 No 7 >d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]} Probab=1.68 E-value=2.8e+02 Score=10.30 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=0.0 Q ss_pred CCCCCCCCEEEEEEEEE Q ss_conf 54211210012236899 Q 537021.9.peg.2 17 GSTAARSTSVINRRYVQ 33 (39) Q Consensus 17 gstaarstsvinrryvq 33 (39) +.+..-.-+-|.|.||| T Consensus 259 ~~t~~G~LtEIrR~YVQ 275 (371) T d1eg1a_ 259 NGSPSGNLVSITRKYQQ 275 (371) T ss_dssp TSSTTSCEEEEEEEEEE T ss_pred CCCCCCCEEEEEEEEEE T ss_conf 98664434477579997 No 8 >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Probab=1.57 E-value=2.3e+02 Score=10.77 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=0.0 Q ss_pred EECCEEEECCCCCCCCCCEEEEE Q ss_conf 73103531135421121001223 Q 537021.9.peg.2 7 IEDSFLYGKMGSTAARSTSVINR 29 (39) Q Consensus 7 iedsflygkmgstaarstsvinr 29 (39) |.|+|--+-+|.+.+--+|.+|+ T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~ 27 (186) T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNA 27 (186) T ss_dssp CCSCEEEEEECSTTSSHHHHHHH T ss_pred CCCCCEEEEECCCCCCHHHHHHH T ss_conf 78888899999999999999999 No 9 >d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A [TaxId: 51453]} Probab=1.53 E-value=3e+02 Score=10.13 Aligned_cols=7 Identities=86% Similarity=1.170 Sum_probs=0.0 Q ss_pred EEEEEEE Q ss_conf 2236899 Q 537021.9.peg.2 27 INRRYVQ 33 (39) Q Consensus 27 inrryvq 33 (39) |.|.||| T Consensus 300 IrR~YVQ 306 (434) T d2v3ia1 300 INRYYVQ 306 (434) T ss_dssp EEEEEEE T ss_pred EEEEEEE T ss_conf 8899986 No 10 >d2fyui1 d.184.1.3 (I:1-57) Ubiquinol-cytochrome c reductase 8 kDa protein {Cow (Bos taurus) [TaxId: 9913]} Probab=1.49 E-value=3.1e+02 Score=10.08 Aligned_cols=8 Identities=75% Similarity=0.576 Sum_probs=0.0 Q ss_pred CCCCCCCC Q ss_conf 35421121 Q 537021.9.peg.2 16 MGSTAARS 23 (39) Q Consensus 16 mgstaars 23 (39) |-|-|||| T Consensus 1 MlSvAARs 8 (57) T d2fyui1 1 MLSVAARS 8 (57) T ss_dssp CCCSGGGS T ss_pred CCCHHHCC T ss_conf 94411014 Done!