Query 537021.9.peg.224_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 15:59:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_224.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1tht_A Thioesterase; 2.10A {V 16.9 51 0.0015 16.6 1.0 13 12-24 5-17 (48) 2 >2vl7_A XPD; helicase, unknown 12.2 88 0.0026 15.5 1.1 17 6-22 6-22 (117) 3 >1u69_A Hypothetical protein; 10.9 1E+02 0.003 15.3 1.1 17 3-19 22-38 (41) 4 >3i0w_A 8-oxoguanine-DNA-glyco 9.5 79 0.0023 15.7 0.1 19 13-31 17-36 (84) 5 >2pus_A IBDV VP1 RNA-dependant 7.5 1.8E+02 0.0055 14.1 1.3 20 6-25 95-114 (189) 6 >1upt_B Golgi autoantigen, gol 5.7 2E+02 0.006 13.9 0.7 14 2-18 17-30 (60) 7 >3dfb_A Metal-binding protein 5.4 2.4E+02 0.0071 13.5 0.9 13 9-21 54-66 (93) 8 >1f45_B Interleukin-12 alpha c 5.1 2.6E+02 0.0077 13.4 1.0 18 19-36 56-73 (197) 9 >2o60_B CAM, peptide correspon 4.6 3.2E+02 0.0095 12.9 1.2 17 6-22 2-18 (26) 10 >3h0l_B Aspartyl/glutamyl-tRNA 4.3 3.8E+02 0.011 12.6 1.6 22 10-31 219-240 (296) No 1 >>1tht_A Thioesterase; 2.10A {Vibrio harveyi} (A:139-186) Probab=16.88 E-value=51 Score=16.62 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=10.5 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999642134444 Q 537021.9.peg.2 12 KTLEKAIKYETIR 24 (38) Q Consensus 12 ktlekaikyetir 24 (38) .|||||.||.-.+ T Consensus 5 ~TLEkaL~yDYL~ 17 (48) T 1tht_A 5 DTLEKALGFDYLS 17 (48) T ss_dssp HHHHHHHSSCGGG T ss_pred HHHHHHHHHHHHH T ss_conf 9999998663013 No 2 >>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} (A:190-306) Probab=12.17 E-value=88 Score=15.53 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=13.2 Q ss_pred HHHCCHHHHHHHHHHHH Q ss_conf 10104899996421344 Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYET 22 (38) Q Consensus 6 kekigiktlekaikyet 22 (38) ..|||-||+|+|.|--. T Consensus 6 ~rkI~kKt~~~AlkEie 22 (117) T 2vl7_A 6 TRKISRKMLERALKEIE 22 (117) T ss_dssp CEEECHHHHHHHHHHHH T ss_pred CCEECHHHHHHHHHHHH T ss_conf 44466999999999999 No 3 >>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} (A:123-163) Probab=10.92 E-value=1e+02 Score=15.28 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.2 Q ss_pred CCCHHHCCHHHHHHHHH Q ss_conf 22410104899996421 Q 537021.9.peg.2 3 MMNKEKIGIKTLEKAIK 19 (38) Q Consensus 3 mmnkekigiktlekaik 19 (38) ||.-.||.|..||+|.. T Consensus 22 Mm~M~KiDIa~Le~A~~ 38 (41) T 1u69_A 22 XXTXGRIDIATIEKAFK 38 (41) T ss_dssp HTTCSSCCHHHHHHHHC T ss_pred HHCCCCEEHHHHHHHHC T ss_conf 87687752999999874 No 4 >>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:81-110,A:237-290) Probab=9.46 E-value=79 Score=15.75 Aligned_cols=19 Identities=42% Similarity=0.814 Sum_probs=14.6 Q ss_pred HHHHHHHH-HHHHHHHHHHC Q ss_conf 99964213-44443220000 Q 537021.9.peg.2 13 TLEKAIKY-ETIRACFPLAT 31 (38) Q Consensus 13 tlekaiky-etiracfplat 31 (38) -|.++|+| +-||..||.-| T Consensus 17 ~~~~~~~~~~~~~~AfPVDt 36 (84) T 3i0w_A 17 LLKKSVDFGEGIRIAFPVDT 36 (84) T ss_dssp HHHHHHHHTTTCCCCCCCCH T ss_pred HHHHHHHHCCCCCCEEEEEH T ss_conf 66799996799888677529 No 5 >>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs, transferase; 2.40A {Infectious bursal disease virus} PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A (A:125-168,A:566-710) Probab=7.45 E-value=1.8e+02 Score=14.06 Aligned_cols=20 Identities=40% Similarity=0.750 Sum_probs=17.3 Q ss_pred HHHCCHHHHHHHHHHHHHHH Q ss_conf 10104899996421344443 Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYETIRA 25 (38) Q Consensus 6 kekigiktlekaikyetira 25 (38) |+|+|.+..-+-+.||.+|- T Consensus 95 k~k~gaeq~Y~ivRyEALRm 114 (189) T 2pus_A 95 KSKVGIEQAYKVVRYEALRL 114 (189) T ss_dssp CCSSHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHH T ss_conf 03612889999999999999 No 6 >>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} (B:) Probab=5.74 E-value=2e+02 Score=13.89 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=9.2 Q ss_pred CCCCHHHCCHHHHHHHH Q ss_conf 42241010489999642 Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAI 18 (38) Q Consensus 2 ymmnkekigiktlekai 18 (38) |||.+|. +||-|.| T Consensus 17 YM~GkEt---~tlaKVi 30 (60) T 1upt_B 17 YXXGRET---KTXAKVI 30 (60) T ss_dssp HHTTSSH---HHHHHHH T ss_pred HHCCCCH---HHHHHHH T ss_conf 9717514---6899999 No 7 >>3dfb_A Metal-binding protein SMBP; four helical bundle, copper, periplasm; 1.90A {Nitrosomonas europaea} (A:) Probab=5.41 E-value=2.4e+02 Score=13.54 Aligned_cols=13 Identities=62% Similarity=0.667 Sum_probs=9.7 Q ss_pred CCHHHHHHHHHHH Q ss_conf 0489999642134 Q 537021.9.peg.2 9 IGIKTLEKAIKYE 21 (38) Q Consensus 9 igiktlekaikye 21 (38) -|||-||.+||-- T Consensus 54 ~~IKhLeeaIkh~ 66 (93) T 3dfb_A 54 HGIKHLEDAIKHG 66 (93) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999988 No 8 >>1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} (B:) Probab=5.11 E-value=2.6e+02 Score=13.36 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHCCCCCC Q ss_conf 134444322000010003 Q 537021.9.peg.2 19 KYETIRACFPLATGYLES 36 (38) Q Consensus 19 kyetiracfplatgyles 36 (38) |-.|++||+|+.-.--|| T Consensus 56 kt~T~~aC~P~el~~~e~ 73 (197) T 1f45_B 56 KTSTVEACLPLELTKNES 73 (197) T ss_dssp --CHHHHTCBGGGGGSTT T ss_pred CCHHHHHHCCCHHCCCHH T ss_conf 301577648711023201 No 9 >>2o60_B CAM, peptide corresponding to calmodulin binding domain of neuronal nitric oxide synthase...; protein-peptide complex, metal binding protein; 1.55A {Gallus gallus} (B:) Probab=4.63 E-value=3.2e+02 Score=12.95 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=13.3 Q ss_pred HHHCCHHHHHHHHHHHH Q ss_conf 10104899996421344 Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYET 22 (38) Q Consensus 6 kekigiktlekaikyet 22 (38) ...||.|.|..|+|+.. T Consensus 2 rraigfkklaeavkfsa 18 (26) T 2o60_B 2 RRAIGFKKLAEAVKFSA 18 (26) T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 52130899999998899 No 10 >>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:1-296) Probab=4.29 E-value=3.8e+02 Score=12.63 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=16.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHC Q ss_conf 4899996421344443220000 Q 537021.9.peg.2 10 GIKTLEKAIKYETIRACFPLAT 31 (38) Q Consensus 10 giktlekaikyetiracfplat 31 (38) .++.+++||.||..|.---|.. T Consensus 219 S~~~i~~aIe~E~~RQ~~ll~~ 240 (296) T 3h0l_B 219 SFRFVQKALEYEIERQINVVEE 240 (296) T ss_dssp SHHHHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHHHHC T ss_conf 6899999999999999999985 Done!