Query 537021.9.peg.224_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 15:59:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_224.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1tht_A Thioesterase; 2.10A {V 16.9 51 0.0015 16.6 1.0 13 12-24 5-17 (48)
2 >2vl7_A XPD; helicase, unknown 12.2 88 0.0026 15.5 1.1 17 6-22 6-22 (117)
3 >1u69_A Hypothetical protein; 10.9 1E+02 0.003 15.3 1.1 17 3-19 22-38 (41)
4 >3i0w_A 8-oxoguanine-DNA-glyco 9.5 79 0.0023 15.7 0.1 19 13-31 17-36 (84)
5 >2pus_A IBDV VP1 RNA-dependant 7.5 1.8E+02 0.0055 14.1 1.3 20 6-25 95-114 (189)
6 >1upt_B Golgi autoantigen, gol 5.7 2E+02 0.006 13.9 0.7 14 2-18 17-30 (60)
7 >3dfb_A Metal-binding protein 5.4 2.4E+02 0.0071 13.5 0.9 13 9-21 54-66 (93)
8 >1f45_B Interleukin-12 alpha c 5.1 2.6E+02 0.0077 13.4 1.0 18 19-36 56-73 (197)
9 >2o60_B CAM, peptide correspon 4.6 3.2E+02 0.0095 12.9 1.2 17 6-22 2-18 (26)
10 >3h0l_B Aspartyl/glutamyl-tRNA 4.3 3.8E+02 0.011 12.6 1.6 22 10-31 219-240 (296)
No 1
>>1tht_A Thioesterase; 2.10A {Vibrio harveyi} (A:139-186)
Probab=16.88 E-value=51 Score=16.62 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999642134444
Q 537021.9.peg.2 12 KTLEKAIKYETIR 24 (38)
Q Consensus 12 ktlekaikyetir 24 (38)
.|||||.||.-.+
T Consensus 5 ~TLEkaL~yDYL~ 17 (48)
T 1tht_A 5 DTLEKALGFDYLS 17 (48)
T ss_dssp HHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998663013
No 2
>>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} (A:190-306)
Probab=12.17 E-value=88 Score=15.53 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=13.2
Q ss_pred HHHCCHHHHHHHHHHHH
Q ss_conf 10104899996421344
Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYET 22 (38)
Q Consensus 6 kekigiktlekaikyet 22 (38)
..|||-||+|+|.|--.
T Consensus 6 ~rkI~kKt~~~AlkEie 22 (117)
T 2vl7_A 6 TRKISRKMLERALKEIE 22 (117)
T ss_dssp CEEECHHHHHHHHHHHH
T ss_pred CCEECHHHHHHHHHHHH
T ss_conf 44466999999999999
No 3
>>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} (A:123-163)
Probab=10.92 E-value=1e+02 Score=15.28 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.2
Q ss_pred CCCHHHCCHHHHHHHHH
Q ss_conf 22410104899996421
Q 537021.9.peg.2 3 MMNKEKIGIKTLEKAIK 19 (38)
Q Consensus 3 mmnkekigiktlekaik 19 (38)
||.-.||.|..||+|..
T Consensus 22 Mm~M~KiDIa~Le~A~~ 38 (41)
T 1u69_A 22 XXTXGRIDIATIEKAFK 38 (41)
T ss_dssp HTTCSSCCHHHHHHHHC
T ss_pred HHCCCCEEHHHHHHHHC
T ss_conf 87687752999999874
No 4
>>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:81-110,A:237-290)
Probab=9.46 E-value=79 Score=15.75 Aligned_cols=19 Identities=42% Similarity=0.814 Sum_probs=14.6
Q ss_pred HHHHHHHH-HHHHHHHHHHC
Q ss_conf 99964213-44443220000
Q 537021.9.peg.2 13 TLEKAIKY-ETIRACFPLAT 31 (38)
Q Consensus 13 tlekaiky-etiracfplat 31 (38)
-|.++|+| +-||..||.-|
T Consensus 17 ~~~~~~~~~~~~~~AfPVDt 36 (84)
T 3i0w_A 17 LLKKSVDFGEGIRIAFPVDT 36 (84)
T ss_dssp HHHHHHHHTTTCCCCCCCCH
T ss_pred HHHHHHHHCCCCCCEEEEEH
T ss_conf 66799996799888677529
No 5
>>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs, transferase; 2.40A {Infectious bursal disease virus} PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A (A:125-168,A:566-710)
Probab=7.45 E-value=1.8e+02 Score=14.06 Aligned_cols=20 Identities=40% Similarity=0.750 Sum_probs=17.3
Q ss_pred HHHCCHHHHHHHHHHHHHHH
Q ss_conf 10104899996421344443
Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYETIRA 25 (38)
Q Consensus 6 kekigiktlekaikyetira 25 (38)
|+|+|.+..-+-+.||.+|-
T Consensus 95 k~k~gaeq~Y~ivRyEALRm 114 (189)
T 2pus_A 95 KSKVGIEQAYKVVRYEALRL 114 (189)
T ss_dssp CCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 03612889999999999999
No 6
>>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} (B:)
Probab=5.74 E-value=2e+02 Score=13.89 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=9.2
Q ss_pred CCCCHHHCCHHHHHHHH
Q ss_conf 42241010489999642
Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAI 18 (38)
Q Consensus 2 ymmnkekigiktlekai 18 (38)
|||.+|. +||-|.|
T Consensus 17 YM~GkEt---~tlaKVi 30 (60)
T 1upt_B 17 YXXGRET---KTXAKVI 30 (60)
T ss_dssp HHTTSSH---HHHHHHH
T ss_pred HHCCCCH---HHHHHHH
T ss_conf 9717514---6899999
No 7
>>3dfb_A Metal-binding protein SMBP; four helical bundle, copper, periplasm; 1.90A {Nitrosomonas europaea} (A:)
Probab=5.41 E-value=2.4e+02 Score=13.54 Aligned_cols=13 Identities=62% Similarity=0.667 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 0489999642134
Q 537021.9.peg.2 9 IGIKTLEKAIKYE 21 (38)
Q Consensus 9 igiktlekaikye 21 (38)
-|||-||.+||--
T Consensus 54 ~~IKhLeeaIkh~ 66 (93)
T 3dfb_A 54 HGIKHLEDAIKHG 66 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999988
No 8
>>1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} (B:)
Probab=5.11 E-value=2.6e+02 Score=13.36 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 134444322000010003
Q 537021.9.peg.2 19 KYETIRACFPLATGYLES 36 (38)
Q Consensus 19 kyetiracfplatgyles 36 (38)
|-.|++||+|+.-.--||
T Consensus 56 kt~T~~aC~P~el~~~e~ 73 (197)
T 1f45_B 56 KTSTVEACLPLELTKNES 73 (197)
T ss_dssp --CHHHHTCBGGGGGSTT
T ss_pred CCHHHHHHCCCHHCCCHH
T ss_conf 301577648711023201
No 9
>>2o60_B CAM, peptide corresponding to calmodulin binding domain of neuronal nitric oxide synthase...; protein-peptide complex, metal binding protein; 1.55A {Gallus gallus} (B:)
Probab=4.63 E-value=3.2e+02 Score=12.95 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=13.3
Q ss_pred HHHCCHHHHHHHHHHHH
Q ss_conf 10104899996421344
Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYET 22 (38)
Q Consensus 6 kekigiktlekaikyet 22 (38)
...||.|.|..|+|+..
T Consensus 2 rraigfkklaeavkfsa 18 (26)
T 2o60_B 2 RRAIGFKKLAEAVKFSA 18 (26)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 52130899999998899
No 10
>>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:1-296)
Probab=4.29 E-value=3.8e+02 Score=12.63 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4899996421344443220000
Q 537021.9.peg.2 10 GIKTLEKAIKYETIRACFPLAT 31 (38)
Q Consensus 10 giktlekaikyetiracfplat 31 (38)
.++.+++||.||..|.---|..
T Consensus 219 S~~~i~~aIe~E~~RQ~~ll~~ 240 (296)
T 3h0l_B 219 SFRFVQKALEYEIERQINVVEE 240 (296)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6899999999999999999985
Done!