Query 537021.9.peg.224_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 16:20:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_224.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3k6g_D Telomeric repeat-bindin 13.8 55 0.0023 15.8 1.2 14 7-20 7-20 (42) 2 1upt_B Golgi autoantigen, golg 11.6 56 0.0024 15.7 0.7 14 2-18 17-30 (60) 3 2eo0_A Hypothetical protein ST 7.5 79 0.0033 15.0 0.2 18 1-18 1-18 (147) 4 3nme_A Ptpkis1 protein, SEX4 g 6.8 61 0.0025 15.6 -0.7 25 2-29 127-152 (294) 5 2l02_A Uncharacterized protein 5.7 1.2E+02 0.005 14.3 0.3 24 9-34 23-46 (82) 6 1f45_B Interleukin-12 alpha ch 5.5 1.8E+02 0.0076 13.4 1.1 18 19-36 56-73 (197) 7 1u69_A Hypothetical protein; s 5.4 1.8E+02 0.0074 13.4 1.1 17 3-19 144-160 (163) 8 2l01_A Uncharacterized protein 5.4 1.1E+02 0.0046 14.4 0.0 24 11-35 27-50 (77) 9 3dfb_A Metal-binding protein S 4.7 2E+02 0.0084 13.2 0.9 13 9-21 54-66 (93) 10 2o60_B CAM, peptide correspond 4.6 2.3E+02 0.0096 12.9 1.2 17 6-22 2-18 (26) No 1 >3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens} Probab=13.82 E-value=55 Score=15.78 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=11.4 Q ss_pred HHCCHHHHHHHHHH Q ss_conf 01048999964213 Q 537021.9.peg.2 7 EKIGIKTLEKAIKY 20 (38) Q Consensus 7 ekigiktlekaiky 20 (38) ..|||.||.+|.|- T Consensus 7 ttigi~tlkaafk~ 20 (42) T 3k6g_D 7 TTIGMMTLKAAFKT 20 (42) T ss_dssp -CCCHHHHHHHHHH T ss_pred CEEHHHHHHHHHHH T ss_conf 42009999999998 No 2 >1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E* Probab=11.60 E-value=56 Score=15.75 Aligned_cols=14 Identities=57% Similarity=0.928 Sum_probs=10.3 Q ss_pred CCCCHHHCCHHHHHHHH Q ss_conf 42241010489999642 Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAI 18 (38) Q Consensus 2 ymmnkekigiktlekai 18 (38) |||.+|. +||.|.| T Consensus 17 YMmG~Et---~tlaKVi 30 (60) T 1upt_B 17 YMMGRET---KTMAKVI 30 (60) T ss_dssp HHTTSSH---HHHHHHH T ss_pred HHCCCCH---HHHHHHH T ss_conf 9707515---7899999 No 3 >2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Probab=7.45 E-value=79 Score=15.04 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=9.6 Q ss_pred CCCCCHHHCCHHHHHHHH Q ss_conf 942241010489999642 Q 537021.9.peg.2 1 MYMMNKEKIGIKTLEKAI 18 (38) Q Consensus 1 mymmnkekigiktlekai 18 (38) |||||+.+--=...|..+ T Consensus 1 ~~m~~~sr~KG~~~ERel 18 (147) T 2eo0_A 1 MYIVNSNKSRGSSVERYI 18 (147) T ss_dssp -----------CHHHHHH T ss_pred CCCCCCCHHHHHHHHHHH T ss_conf 953203444617999999 No 4 >3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Probab=6.79 E-value=61 Score=15.59 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=13.9 Q ss_pred CCCCHHHCCHHHHHHHHHH-HHHHHHHHH Q ss_conf 4224101048999964213-444432200 Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAIKY-ETIRACFPL 29 (38) Q Consensus 2 ymmnkekigiktlekaiky-etiracfpl 29 (38) |+|.+..+ +++.|+++ ...|.|+|- T Consensus 127 YLm~~~g~---s~~~A~~~v~~~Rpc~P~ 152 (294) T 3nme_A 127 YMFWVQGY---KLMEAHKLLMSKRSCFPK 152 (294) T ss_dssp HHHHTSCC---CHHHHHHHHHHHCCCCCC T ss_pred HHHHHHCC---CHHHHHHHHHHCCCCCCC T ss_conf 99998199---999999999975998998 No 5 >2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Probab=5.68 E-value=1.2e+02 Score=14.26 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=10.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 04899996421344443220000100 Q 537021.9.peg.2 9 IGIKTLEKAIKYETIRACFPLATGYL 34 (38) Q Consensus 9 igiktlekaikyetiracfplatgyl 34 (38) ..++.|-|++++. +.-.-+|-|+| T Consensus 23 ~s~~eL~k~t~ls--d~e~~lAiGWL 46 (82) T 2l02_A 23 ISIPELARKVNLS--VESTALAVGWL 46 (82) T ss_dssp BCHHHHHHHHTCC--HHHHHHHHHHH T ss_pred CCHHHHHHHHCCC--HHHHHHHHHHH T ss_conf 7799999886959--99999987587 No 6 >1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB: 3hmx_B* Probab=5.46 E-value=1.8e+02 Score=13.41 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHCCCCCC Q ss_conf 134444322000010003 Q 537021.9.peg.2 19 KYETIRACFPLATGYLES 36 (38) Q Consensus 19 kyetiracfplatgyles 36 (38) +-.|++||+|+.-.--|| T Consensus 56 ~t~T~~AC~P~el~~~e~ 73 (197) T 1f45_B 56 KTSTVEACLPLELTKNES 73 (197) T ss_dssp --CHHHHTCBGGGGGSTT T ss_pred CCCHHHHHCCCHHCCCHH T ss_conf 532135428702123201 No 7 >1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} SCOP: d.32.1.7 Probab=5.43 E-value=1.8e+02 Score=13.44 Aligned_cols=17 Identities=53% Similarity=0.706 Sum_probs=13.4 Q ss_pred CCCHHHCCHHHHHHHHH Q ss_conf 22410104899996421 Q 537021.9.peg.2 3 MMNKEKIGIKTLEKAIK 19 (38) Q Consensus 3 mmnkekigiktlekaik 19 (38) ||...||-|..||+|-+ T Consensus 144 ~~~m~k~d~~~l~~a~~ 160 (163) T 1u69_A 144 MMTMGRIDIATIEKAFK 160 (163) T ss_dssp HTTCSSCCHHHHHHHHC T ss_pred HHCCCCEEHHHHHHHHC T ss_conf 86786742999999874 No 8 >2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus} Probab=5.42 E-value=1.1e+02 Score=14.39 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 8999964213444432200001000 Q 537021.9.peg.2 11 IKTLEKAIKYETIRACFPLATGYLE 35 (38) Q Consensus 11 iktlekaikyetiracfplatgyle 35 (38) ++.|.|+++...- .-.-+|-|+|- T Consensus 27 ~~eLkk~t~l~~d-~el~~AiGWLA 50 (77) T 2l01_A 27 QKQIKKATKLKAD-KDFFLGLGWLL 50 (77) T ss_dssp HHHHHHHHTCSCH-HHHHHHHHHHH T ss_pred HHHHHHHHCCCCH-HHHHHHHHHHH T ss_conf 9999999789938-89999864885 No 9 >3dfb_A Metal-binding protein SMBP; four helical bundle, copper, periplasm; 1.90A {Nitrosomonas europaea} Probab=4.72 E-value=2e+02 Score=13.20 Aligned_cols=13 Identities=62% Similarity=0.667 Sum_probs=9.8 Q ss_pred CCHHHHHHHHHHH Q ss_conf 0489999642134 Q 537021.9.peg.2 9 IGIKTLEKAIKYE 21 (38) Q Consensus 9 igiktlekaikye 21 (38) -+||-||.+||-- T Consensus 54 ~~IkhLe~aIkha 66 (93) T 3dfb_A 54 HGIKHLEDAIKHG 66 (93) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999877 No 10 >2o60_B CAM, peptide corresponding to calmodulin binding domain of neuronal nitric oxide synthase...; protein-peptide complex, metal binding protein; 1.55A {Gallus gallus} Probab=4.61 E-value=2.3e+02 Score=12.93 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=13.2 Q ss_pred HHHCCHHHHHHHHHHHH Q ss_conf 10104899996421344 Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYET 22 (38) Q Consensus 6 kekigiktlekaikyet 22 (38) ...||.|.|..|+|+.. T Consensus 2 rraigfkklaeavkfsa 18 (26) T 2o60_B 2 RRAIGFKKLAEAVKFSA 18 (26) T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 52130899999998899 Done!