Query 537021.9.peg.224_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 16:20:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_224.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k6g_D Telomeric repeat-bindin 13.8 55 0.0023 15.8 1.2 14 7-20 7-20 (42)
2 1upt_B Golgi autoantigen, golg 11.6 56 0.0024 15.7 0.7 14 2-18 17-30 (60)
3 2eo0_A Hypothetical protein ST 7.5 79 0.0033 15.0 0.2 18 1-18 1-18 (147)
4 3nme_A Ptpkis1 protein, SEX4 g 6.8 61 0.0025 15.6 -0.7 25 2-29 127-152 (294)
5 2l02_A Uncharacterized protein 5.7 1.2E+02 0.005 14.3 0.3 24 9-34 23-46 (82)
6 1f45_B Interleukin-12 alpha ch 5.5 1.8E+02 0.0076 13.4 1.1 18 19-36 56-73 (197)
7 1u69_A Hypothetical protein; s 5.4 1.8E+02 0.0074 13.4 1.1 17 3-19 144-160 (163)
8 2l01_A Uncharacterized protein 5.4 1.1E+02 0.0046 14.4 0.0 24 11-35 27-50 (77)
9 3dfb_A Metal-binding protein S 4.7 2E+02 0.0084 13.2 0.9 13 9-21 54-66 (93)
10 2o60_B CAM, peptide correspond 4.6 2.3E+02 0.0096 12.9 1.2 17 6-22 2-18 (26)
No 1
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=13.82 E-value=55 Score=15.78 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=11.4
Q ss_pred HHCCHHHHHHHHHH
Q ss_conf 01048999964213
Q 537021.9.peg.2 7 EKIGIKTLEKAIKY 20 (38)
Q Consensus 7 ekigiktlekaiky 20 (38)
..|||.||.+|.|-
T Consensus 7 ttigi~tlkaafk~ 20 (42)
T 3k6g_D 7 TTIGMMTLKAAFKT 20 (42)
T ss_dssp -CCCHHHHHHHHHH
T ss_pred CEEHHHHHHHHHHH
T ss_conf 42009999999998
No 2
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=11.60 E-value=56 Score=15.75 Aligned_cols=14 Identities=57% Similarity=0.928 Sum_probs=10.3
Q ss_pred CCCCHHHCCHHHHHHHH
Q ss_conf 42241010489999642
Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAI 18 (38)
Q Consensus 2 ymmnkekigiktlekai 18 (38)
|||.+|. +||.|.|
T Consensus 17 YMmG~Et---~tlaKVi 30 (60)
T 1upt_B 17 YMMGRET---KTMAKVI 30 (60)
T ss_dssp HHTTSSH---HHHHHHH
T ss_pred HHCCCCH---HHHHHHH
T ss_conf 9707515---7899999
No 3
>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=7.45 E-value=79 Score=15.04 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=9.6
Q ss_pred CCCCCHHHCCHHHHHHHH
Q ss_conf 942241010489999642
Q 537021.9.peg.2 1 MYMMNKEKIGIKTLEKAI 18 (38)
Q Consensus 1 mymmnkekigiktlekai 18 (38)
|||||+.+--=...|..+
T Consensus 1 ~~m~~~sr~KG~~~ERel 18 (147)
T 2eo0_A 1 MYIVNSNKSRGSSVERYI 18 (147)
T ss_dssp -----------CHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 953203444617999999
No 4
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=6.79 E-value=61 Score=15.59 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=13.9
Q ss_pred CCCCHHHCCHHHHHHHHHH-HHHHHHHHH
Q ss_conf 4224101048999964213-444432200
Q 537021.9.peg.2 2 YMMNKEKIGIKTLEKAIKY-ETIRACFPL 29 (38)
Q Consensus 2 ymmnkekigiktlekaiky-etiracfpl 29 (38)
|+|.+..+ +++.|+++ ...|.|+|-
T Consensus 127 YLm~~~g~---s~~~A~~~v~~~Rpc~P~ 152 (294)
T 3nme_A 127 YMFWVQGY---KLMEAHKLLMSKRSCFPK 152 (294)
T ss_dssp HHHHTSCC---CHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHCC---CHHHHHHHHHHCCCCCCC
T ss_conf 99998199---999999999975998998
No 5
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=5.68 E-value=1.2e+02 Score=14.26 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 04899996421344443220000100
Q 537021.9.peg.2 9 IGIKTLEKAIKYETIRACFPLATGYL 34 (38)
Q Consensus 9 igiktlekaikyetiracfplatgyl 34 (38)
..++.|-|++++. +.-.-+|-|+|
T Consensus 23 ~s~~eL~k~t~ls--d~e~~lAiGWL 46 (82)
T 2l02_A 23 ISIPELARKVNLS--VESTALAVGWL 46 (82)
T ss_dssp BCHHHHHHHHTCC--HHHHHHHHHHH
T ss_pred CCHHHHHHHHCCC--HHHHHHHHHHH
T ss_conf 7799999886959--99999987587
No 6
>1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB: 3hmx_B*
Probab=5.46 E-value=1.8e+02 Score=13.41 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 134444322000010003
Q 537021.9.peg.2 19 KYETIRACFPLATGYLES 36 (38)
Q Consensus 19 kyetiracfplatgyles 36 (38)
+-.|++||+|+.-.--||
T Consensus 56 ~t~T~~AC~P~el~~~e~ 73 (197)
T 1f45_B 56 KTSTVEACLPLELTKNES 73 (197)
T ss_dssp --CHHHHTCBGGGGGSTT
T ss_pred CCCHHHHHCCCHHCCCHH
T ss_conf 532135428702123201
No 7
>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} SCOP: d.32.1.7
Probab=5.43 E-value=1.8e+02 Score=13.44 Aligned_cols=17 Identities=53% Similarity=0.706 Sum_probs=13.4
Q ss_pred CCCHHHCCHHHHHHHHH
Q ss_conf 22410104899996421
Q 537021.9.peg.2 3 MMNKEKIGIKTLEKAIK 19 (38)
Q Consensus 3 mmnkekigiktlekaik 19 (38)
||...||-|..||+|-+
T Consensus 144 ~~~m~k~d~~~l~~a~~ 160 (163)
T 1u69_A 144 MMTMGRIDIATIEKAFK 160 (163)
T ss_dssp HTTCSSCCHHHHHHHHC
T ss_pred HHCCCCEEHHHHHHHHC
T ss_conf 86786742999999874
No 8
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=5.42 E-value=1.1e+02 Score=14.39 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8999964213444432200001000
Q 537021.9.peg.2 11 IKTLEKAIKYETIRACFPLATGYLE 35 (38)
Q Consensus 11 iktlekaikyetiracfplatgyle 35 (38)
++.|.|+++...- .-.-+|-|+|-
T Consensus 27 ~~eLkk~t~l~~d-~el~~AiGWLA 50 (77)
T 2l01_A 27 QKQIKKATKLKAD-KDFFLGLGWLL 50 (77)
T ss_dssp HHHHHHHHTCSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCCH-HHHHHHHHHHH
T ss_conf 9999999789938-89999864885
No 9
>3dfb_A Metal-binding protein SMBP; four helical bundle, copper, periplasm; 1.90A {Nitrosomonas europaea}
Probab=4.72 E-value=2e+02 Score=13.20 Aligned_cols=13 Identities=62% Similarity=0.667 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 0489999642134
Q 537021.9.peg.2 9 IGIKTLEKAIKYE 21 (38)
Q Consensus 9 igiktlekaikye 21 (38)
-+||-||.+||--
T Consensus 54 ~~IkhLe~aIkha 66 (93)
T 3dfb_A 54 HGIKHLEDAIKHG 66 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999877
No 10
>2o60_B CAM, peptide corresponding to calmodulin binding domain of neuronal nitric oxide synthase...; protein-peptide complex, metal binding protein; 1.55A {Gallus gallus}
Probab=4.61 E-value=2.3e+02 Score=12.93 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=13.2
Q ss_pred HHHCCHHHHHHHHHHHH
Q ss_conf 10104899996421344
Q 537021.9.peg.2 6 KEKIGIKTLEKAIKYET 22 (38)
Q Consensus 6 kekigiktlekaikyet 22 (38)
...||.|.|..|+|+..
T Consensus 2 rraigfkklaeavkfsa 18 (26)
T 2o60_B 2 RRAIGFKKLAEAVKFSA 18 (26)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 52130899999998899
Done!