RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.224_1
         (38 letters)



>gnl|CDD|163072 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
           lipoprotein.  This protein family occurs in strictly
           within a subset of Gram-negative bacterial species with
           the proposed PEP-CTERM/exosortase system, analogous to
           the LPXTG/sortase system common in Gram-positive
           bacteria. This protein occurs in a species if and only
           if a transmembrane histidine kinase (TIGR02916) and a
           DNA-binding response regulator (TIGR02915) also occur.
           The present of tetratricopeptide repeats (TPR) suggests
           protein-protein interaction, possibly for the regulation
           of PEP-CTERM protein expression, since many PEP-CTERM
           proteins in these genomes are preceded by a proposed DNA
           binding site for the response regulator.
          Length = 899

 Score = 27.7 bits (62), Expect = 0.64
 Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 2/36 (5%)

Query: 3   MMNKEKIGIKTLEKAIK--YETIRACFPLATGYLES 36
                   I  LE A +   E  RA   L   YL S
Sbjct: 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444


>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional.
          Length = 248

 Score = 25.7 bits (57), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 1   MYMMNKEKIGIKTLEKAIKYETIRACFP 28
            +M++ E  G+K L KAI+ E  RA  P
Sbjct: 199 PFMVDTET-GVKALVKAIEKEPGRAAVP 225


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 554,849
Number of extensions: 15914
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 5
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)