Query 537021.9.peg.227_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 15:58:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_227.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ksi_A Copper amine oxidase; 50.8 20 0.00059 18.3 3.7 23 3-25 31-53 (436) 2 >2oqe_A Peroxisomal copper ami 40.9 25 0.00073 17.8 2.9 24 3-26 21-44 (430) 3 >3hi7_A Amiloride-sensitive am 38.3 28 0.00084 17.5 2.9 22 3-24 39-60 (469) 4 >1tu5_A Copper amine oxidase, 38.3 29 0.00085 17.5 2.9 23 3-25 31-53 (460) 5 >1spu_A Copper amine oxidase; 33.6 38 0.0011 16.8 2.9 24 3-26 46-69 (446) 6 >1w6g_A Phenylethylamine oxida 33.3 42 0.0013 16.6 3.1 24 3-26 31-54 (437) 7 >1orv_A Dipeptidyl peptidase I 21.6 59 0.0017 15.9 2.1 21 7-27 6-28 (41) 8 >2pqr_C WD repeat protein YKR0 17.9 30 0.0009 17.3 0.0 14 12-25 7-20 (64) 9 >2k0r_A Thiol:disulfide interc 16.0 96 0.0028 14.7 2.2 21 5-25 25-45 (128) 10 >1w7c_A Lysyl oxidase; AMNE ox 14.5 40 0.0012 16.7 -0.1 20 4-23 38-57 (470) No 1 >>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} (A:207-642) Probab=50.83 E-value=20 Score=18.29 Aligned_cols=23 Identities=26% Similarity=0.683 Sum_probs=20.8 Q ss_pred EEEEEEEECCCCEEEEEECCCCC Q ss_conf 47899997354139998336301 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYT 25 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfyt 25 (37) .|.++++|++|.|+-|++-.|.. T Consensus 31 ~W~f~~~~~~reGlvL~dv~y~d 53 (436) T 1ksi_A 31 NWKFHIGFDVRAGIVISLASIYD 53 (436) T ss_dssp TEEEEEEEETTTEEEEEEEEEEE T ss_pred CCEEEEEECCCCCCEEEEEEEEC T ss_conf 87799973687662578789872 No 2 >>2oqe_A Peroxisomal copper amine oxidase; protein-derived cofactor, TPQ, XE, xenon complex, oxidoreductase; HET: TPQ; 1.60A {Pichia angusta} (A:231-660) Probab=40.92 E-value=25 Score=17.81 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.0 Q ss_pred EEEEEEEECCCCEEEEEECCCCCC Q ss_conf 478999973541399983363012 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQ 26 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytq 26 (37) .|.++++|..|.|+-|++-.|.-+ T Consensus 21 ~W~f~~g~~~r~Gl~L~dv~y~~~ 44 (430) T 2oqe_A 21 NFKFHIGFNYREGIVLSDVSYNDH 44 (430) T ss_dssp TEEEEEEEETTTEEEEEEEEEEET T ss_pred CCEEEEECCCCCCEEEEEEEECCC T ss_conf 967999607875408987798589 No 3 >>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, diamine oxidase, DAO, human, alternative splicing; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* (A:263-731) Probab=38.33 E-value=28 Score=17.48 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.5 Q ss_pred EEEEEEEECCCCEEEEEECCCC Q ss_conf 4789999735413999833630 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFY 24 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfy 24 (37) .|.++++|..|.|+-|++-.|. T Consensus 39 ~W~f~vgf~~reGlvL~dv~y~ 60 (469) T 3hi7_A 39 GWSFAFRLRSSSGLQVLNVHFG 60 (469) T ss_dssp TEEEEEEEETTTEEEEEEEEET T ss_pred CCEEEEECCCCCCEEEEEEEEC T ss_conf 8779983488863499888888 No 4 >>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 1us1_A* 1pu4_A* 2c10_A* 2c11_A* (A:287-746) Probab=38.26 E-value=29 Score=17.47 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=19.9 Q ss_pred EEEEEEEECCCCEEEEEECCCCC Q ss_conf 47899997354139998336301 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYT 25 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfyt 25 (37) .|.++++|..|.|+-|++-.|.- T Consensus 31 ~W~f~~~f~~r~Gl~L~dv~y~~ 53 (460) T 1tu5_A 31 LWTFSFGLGAFSGPRVFDVRFQG 53 (460) T ss_dssp SEEEEEEEETTTEEEEEEEEETT T ss_pred CCEEEEEECCCCCCEEEEEEECC T ss_conf 88799960787786898778899 No 5 >>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} (A:79-95,A:299-727) Probab=33.57 E-value=38 Score=16.84 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.6 Q ss_pred EEEEEEEECCCCEEEEEECCCCCC Q ss_conf 478999973541399983363012 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQ 26 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytq 26 (37) .|.++++|..|.|+-|++-.|.-+ T Consensus 46 ~W~f~~~f~~r~Glvl~dv~y~g~ 69 (446) T 1spu_A 46 NWDFHLSMNSRVGPMISTVTYNDN 69 (446) T ss_dssp TEEEEEEEETTTEEEEEEEEEEET T ss_pred CCEEEEEECCCCCCEEEEEEEECC T ss_conf 977999716876628987799379 No 6 >>1w6g_A Phenylethylamine oxidase; 3D-structure, copper, copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} (A:210-646) Probab=33.32 E-value=42 Score=16.58 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.4 Q ss_pred EEEEEEEECCCCEEEEEECCCCCC Q ss_conf 478999973541399983363012 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQ 26 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytq 26 (37) -|.++++|..|.|+-|++-.|.-+ T Consensus 31 ~W~f~~~f~~r~Gl~l~dv~y~g~ 54 (437) T 1w6g_A 31 KWSLDVGFDVREGVVLHNIAFRDG 54 (437) T ss_dssp TEEEEEEEETTTEEEEEEEEEEET T ss_pred CCEEEEEECCCCCEEEEEEEECCC T ss_conf 878999607875408987687489 No 7 >>1orv_A Dipeptidyl peptidase IV; serine protease, mechanism, oxyanion HOLE, substrate channeling, drug design, diabetes mellitus, hydrolase; HET: NAG BMA; 1.80A {Sus scrofa} (A:111-151) Probab=21.60 E-value=59 Score=15.85 Aligned_cols=21 Identities=19% Similarity=0.673 Sum_probs=15.7 Q ss_pred EEEEC--CCCEEEEEECCCCCCC Q ss_conf 99973--5413999833630123 Q 537021.9.peg.2 7 YVSFS--SRKGIFLYQNNFYTQE 27 (37) Q Consensus 7 yvsfs--srkgiflyqnnfytqe 27 (37) |.+|| +++=.|.+.||.|-++ T Consensus 6 ~a~wSP~G~~vafV~~nNiYv~~ 28 (41) T 1orv_A 6 WITWSPVGHKLAYVWNNDIYVKN 28 (41) T ss_dssp EEEECSSTTCEEEEETTEEEEES T ss_pred EEEECCCCCEEEEEECCEEEEEE T ss_conf 25999999989999898089998 No 8 >>2pqr_C WD repeat protein YKR036C; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} (C:) Probab=17.90 E-value=30 Score=17.33 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=10.6 Q ss_pred CCCEEEEEECCCCC Q ss_conf 54139998336301 Q 537021.9.peg.2 12 SRKGIFLYQNNFYT 25 (37) Q Consensus 12 srkgiflyqnnfyt 25 (37) ..-|||-+|||+-. T Consensus 7 gqvgifsfqnnyad 20 (64) T 2pqr_C 7 GQVGIFSFQNNYAD 20 (64) T ss_dssp -------------- T ss_pred CEEEEEEEECCCCC T ss_conf 60679984045543 No 9 >>2k0r_A Thiol:disulfide interchange protein DSBD; immunoglobulin, mutant, N-terminal domain, disulfide bond reductase; NMR {Neisseria meningitidis serogroup B} PDB: 2k9f_B (A:) Probab=15.96 E-value=96 Score=14.74 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=16.3 Q ss_pred EEEEEECCCCEEEEEECCCCC Q ss_conf 899997354139998336301 Q 537021.9.peg.2 5 GLYVSFSSRKGIFLYQNNFYT 25 (37) Q Consensus 5 glyvsfssrkgiflyqnnfyt 25 (37) .+.+.|.-..|.+||+|.|-- T Consensus 25 ~l~i~~~Ia~gyyLY~~~i~~ 45 (128) T 2k0r_A 25 GVNVRFRIADGYYMYQAKIVG 45 (128) T ss_dssp EEEEEEEECTTEEEETTTCEE T ss_pred EEEEEEEECCCCEEEEEEEEE T ss_conf 789999978981332124564 No 10 >>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} (A:268-737) Probab=14.51 E-value=40 Score=16.72 Aligned_cols=20 Identities=45% Similarity=1.022 Sum_probs=0.0 Q ss_pred EEEEEEECCCCEEEEEECCC Q ss_conf 78999973541399983363 Q 537021.9.peg.2 4 WGLYVSFSSRKGIFLYQNNF 23 (37) Q Consensus 4 wglyvsfssrkgiflyqnnf 23 (37) |.++++|++|.|+-|++-.| T Consensus 38 W~f~~~~~~r~Gl~l~dv~y 57 (470) T 1w7c_A 38 WGFYTSWSRDTGISFYDITF 57 (470) T ss_dssp TTEEEEEEEETTTEEEEEEE T ss_pred CCCEEEEECCCCCCEEEEEE T ss_conf 58479985377766189855 Done!