Query 537021.9.peg.227_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 16:08:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_227.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3loy_A Copper amine oxidase; T 39.9 24 0.001 17.1 3.8 28 3-32 249-276 (633) 2 1ksi_A Copper amine oxidase; P 38.4 26 0.0011 16.9 3.7 23 3-25 237-259 (642) 3 1w6g_A Phenylethylamine oxidas 37.2 24 0.00099 17.1 3.1 26 3-28 240-265 (646) 4 3hi7_A Amiloride-sensitive ami 31.1 34 0.0014 16.3 3.8 28 3-32 301-328 (731) 5 2oqe_A Peroxisomal copper amin 29.0 35 0.0015 16.2 2.9 24 3-26 251-274 (660) 6 1tu5_A Copper amine oxidase, l 24.3 46 0.0019 15.6 2.9 28 3-32 317-344 (746) 7 1w7c_A Lysyl oxidase; AMNE oxi 22.5 50 0.0021 15.4 2.9 28 3-32 306-333 (747) 8 1spu_A Copper amine oxidase; o 19.2 59 0.0025 15.0 2.9 24 3-26 327-350 (727) 9 2pqr_C WD repeat protein YKR03 17.9 21 0.0009 17.3 0.0 14 12-25 7-20 (64) 10 2k0r_A Thiol:disulfide interch 14.4 78 0.0033 14.4 2.2 20 5-24 25-44 (128) No 1 >3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta} Probab=39.93 E-value=24 Score=17.06 Aligned_cols=28 Identities=29% Similarity=0.721 Sum_probs=22.3 Q ss_pred EEEEEEEECCCCEEEEEECCCCCCCCEEEE Q ss_conf 478999973541399983363012330799 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY 32 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytqekevcy 32 (37) -|.++++|.+|.|+-||+-.| +.+.|-| T Consensus 249 ~W~f~~~f~~~~Gl~l~dv~~--~~r~v~y 276 (633) T 3loy_A 249 GWEFFVIPTVREGFAIYDIHF--KGRSVVY 276 (633) T ss_dssp TEEEEEEEETTTEEEEEEEEE--TTEEEEE T ss_pred CCEEEEEECCCCCEEEEEEEE--CCCEEEE T ss_conf 867999716876338997456--6803478 No 2 >1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A* Probab=38.40 E-value=26 Score=16.93 Aligned_cols=23 Identities=26% Similarity=0.683 Sum_probs=20.6 Q ss_pred EEEEEEEECCCCEEEEEECCCCC Q ss_conf 47899997354139998336301 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYT 25 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfyt 25 (37) -|.++++|..|.|+-|++-.|+. T Consensus 237 ~W~f~~~~~~r~GlvL~dv~~~d 259 (642) T 1ksi_A 237 NWKFHIGFDVRAGIVISLASIYD 259 (642) T ss_dssp TEEEEEEEETTTEEEEEEEEEEE T ss_pred CCEEEEEECCCCCCEEEEEEEEC T ss_conf 96799960787653577778873 No 3 >1w6g_A Phenylethylamine oxidase; 3D-structure, copper, copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* 1iu7_A* 1ivw_A* ... Probab=37.23 E-value=24 Score=17.11 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=22.1 Q ss_pred EEEEEEEECCCCEEEEEECCCCCCCC Q ss_conf 47899997354139998336301233 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQEK 28 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytqek 28 (37) -|.++++|..|.|+-|++-.|.-.++ T Consensus 240 ~W~f~~~~~~r~Gl~l~~v~~~~~~~ 265 (646) T 1w6g_A 240 KWSLDVGFDVREGVVLHNIAFRDGDR 265 (646) T ss_dssp TEEEEEEEETTTEEEEEEEEEEETTE T ss_pred CCEEEEEECCCCCCEEEEEEECCCCE T ss_conf 85799960787552899999838984 No 4 >3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, diamine oxidase, DAO, human, alternative splicing; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A* Probab=31.05 E-value=34 Score=16.27 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=22.0 Q ss_pred EEEEEEEECCCCEEEEEECCCCCCCCEEEE Q ss_conf 478999973541399983363012330799 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY 32 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytqekevcy 32 (37) -|.+++.|..|.|+-|++-.|-- ..|-| T Consensus 301 ~W~f~~gf~~reGl~l~dv~y~g--r~v~y 328 (731) T 3hi7_A 301 GWSFAFRLRSSSGLQVLNVHFGG--ERIAY 328 (731) T ss_dssp TEEEEEEEETTTEEEEEEEEETT--EEEEE T ss_pred CCEEEEECCCCCCEEEEEEEECC--EEEEE T ss_conf 85799844798515998867898--67577 No 5 >2oqe_A Peroxisomal copper amine oxidase; protein-derived cofactor, TPQ, XE, xenon complex, oxidoreductase; HET: TPQ; 1.60A {Pichia angusta} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 2oov_A* 2oqe_C* 2oov_C* 3n9h_A* 3nbj_A* 3nbb_A* 1a2v_A* 1ekm_A Probab=29.02 E-value=35 Score=16.21 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.8 Q ss_pred EEEEEEEECCCCEEEEEECCCCCC Q ss_conf 478999973541399983363012 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQ 26 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytq 26 (37) -|.++++|+.|.|+-||+-.|--+ T Consensus 251 ~W~F~vgf~~reGlvL~dV~f~~~ 274 (660) T 2oqe_A 251 NFKFHIGFNYREGIVLSDVSYNDH 274 (660) T ss_dssp TEEEEEEEETTTEEEEEEEEEEET T ss_pred CCEEEEECCCCCCEEEEEEEECCC T ss_conf 857999658875428988898389 No 6 >1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 1us1_A* 1pu4_A* 2c10_A* 2c11_A* Probab=24.26 E-value=46 Score=15.60 Aligned_cols=28 Identities=14% Similarity=0.422 Sum_probs=21.8 Q ss_pred EEEEEEEECCCCEEEEEECCCCCCCCEEEE Q ss_conf 478999973541399983363012330799 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY 32 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytqekevcy 32 (37) -|.+++.|+.|.|+-|++-.|-- ..|-| T Consensus 317 ~W~F~~gf~~reGl~L~dv~f~g--rrv~Y 344 (746) T 1tu5_A 317 LWTFSFGLGAFSGPRVFDVRFQG--ERLAY 344 (746) T ss_dssp SEEEEEEEETTTEEEEEEEEETT--EEEEE T ss_pred CCEEEEEECCCCCCEEEEEEECC--EEEEE T ss_conf 98799960687774898667899--78899 No 7 >1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A* Probab=22.50 E-value=50 Score=15.41 Aligned_cols=28 Identities=36% Similarity=0.841 Sum_probs=21.8 Q ss_pred EEEEEEEECCCCEEEEEECCCCCCCCEEEE Q ss_conf 478999973541399983363012330799 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQEKEVCY 32 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytqekevcy 32 (37) -|.++++|+.|.|+-|++-.|-. ..|-| T Consensus 306 ~W~f~~~f~~r~Gl~L~dv~~~g--rri~Y 333 (747) T 1w7c_A 306 DWGFYTSWSRDTGISFYDITFKG--ERIVY 333 (747) T ss_dssp TEEEEEEEETTTEEEEEEEEETT--EEEEE T ss_pred CCEEEEECCCCCCEEEEEEEECC--EEEEE T ss_conf 84799862777660898548778--16677 No 8 >1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A* Probab=19.24 E-value=59 Score=15.03 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.7 Q ss_pred EEEEEEEECCCCEEEEEECCCCCC Q ss_conf 478999973541399983363012 Q 537021.9.peg.2 3 TWGLYVSFSSRKGIFLYQNNFYTQ 26 (37) Q Consensus 3 twglyvsfssrkgiflyqnnfytq 26 (37) .|-++++|..|.|+-|++-.|.-. T Consensus 327 ~W~F~vgf~~reGlvL~dV~y~d~ 350 (727) T 1spu_A 327 NWDFHLSMNSRVGPMISTVTYNDN 350 (727) T ss_dssp TEEEEEEEETTTEEEEEEEEEEET T ss_pred CCEEEEECCCCCCCEEEEEEEECC T ss_conf 947999668876618987899589 No 9 >2pqr_C WD repeat protein YKR036C; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} Probab=17.90 E-value=21 Score=17.33 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=10.6 Q ss_pred CCCEEEEEECCCCC Q ss_conf 54139998336301 Q 537021.9.peg.2 12 SRKGIFLYQNNFYT 25 (37) Q Consensus 12 srkgiflyqnnfyt 25 (37) ..-|||-+|||+-. T Consensus 7 gqvgifsfqnnyad 20 (64) T 2pqr_C 7 GQVGIFSFQNNYAD 20 (64) T ss_dssp -------------- T ss_pred CEEEEEEEECCCCC T ss_conf 60679984045543 No 10 >2k0r_A Thiol:disulfide interchange protein DSBD; immunoglobulin, mutant, N-terminal domain, disulfide bond reductase; NMR {Neisseria meningitidis serogroup B} PDB: 2k9f_B Probab=14.43 E-value=78 Score=14.40 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=15.3 Q ss_pred EEEEEECCCCEEEEEECCCC Q ss_conf 89999735413999833630 Q 537021.9.peg.2 5 GLYVSFSSRKGIFLYQNNFY 24 (37) Q Consensus 5 glyvsfssrkgiflyqnnfy 24 (37) .+.++|.-..|.+||++.|- T Consensus 25 ~l~i~~~Ia~gyYLY~dki~ 44 (128) T 2k0r_A 25 GVNVRFRIADGYYMYQAKIV 44 (128) T ss_dssp EEEEEEEECTTEEEETTTCE T ss_pred EEEEEEEECCCCEEEEEEEE T ss_conf 89999996899288724688 Done!