RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.227_1
         (37 letters)



>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase; Provisional.
          Length = 458

 Score = 26.6 bits (59), Expect = 1.4
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 5   GLYVSFSSR----KGIFLYQNNFYTQEKEVC 31
           G  V FS +    +G +L     Y + KEVC
Sbjct: 242 GDVVKFSRKEKVYEGAYLKNGKLYIRGKEVC 272


>gnl|CDD|149495 pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated.  This
          domain is found in bacterial proteins of the
          SWF/SNF/SWI helicase family to the N-terminus of the
          SNF2 family N-terminal domain (pfam00176) and together
          with the Helicase conserved C-terminal domain
          (pfam00271). The function of the domain is not clear.
          Length = 376

 Score = 24.1 bits (53), Expect = 7.6
 Identities = 8/28 (28%), Positives = 8/28 (28%)

Query: 5  GLYVSFSSRKGIFLYQNNFYTQEKEVCY 32
           L V   S      YQ   Y   KE   
Sbjct: 63 KLPVILFSDYDYLFYQGTIYRLSKEQRE 90


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 541,022
Number of extensions: 14775
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 37
Length of database: 5,994,473
Length adjustment: 11
Effective length of query: 26
Effective length of database: 5,756,785
Effective search space: 149676410
Effective search space used: 149676410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)