RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.227_1 (37 letters) >gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 458 Score = 26.6 bits (59), Expect = 1.4 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%) Query: 5 GLYVSFSSR----KGIFLYQNNFYTQEKEVC 31 G V FS + +G +L Y + KEVC Sbjct: 242 GDVVKFSRKEKVYEGAYLKNGKLYIRGKEVC 272 >gnl|CDD|149495 pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated. This domain is found in bacterial proteins of the SWF/SNF/SWI helicase family to the N-terminus of the SNF2 family N-terminal domain (pfam00176) and together with the Helicase conserved C-terminal domain (pfam00271). The function of the domain is not clear. Length = 376 Score = 24.1 bits (53), Expect = 7.6 Identities = 8/28 (28%), Positives = 8/28 (28%) Query: 5 GLYVSFSSRKGIFLYQNNFYTQEKEVCY 32 L V S YQ Y KE Sbjct: 63 KLPVILFSDYDYLFYQGTIYRLSKEQRE 90 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.329 0.140 0.461 Gapped Lambda K H 0.267 0.0703 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 541,022 Number of extensions: 14775 Number of successful extensions: 42 Number of sequences better than 10.0: 1 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 3 Length of query: 37 Length of database: 5,994,473 Length adjustment: 11 Effective length of query: 26 Effective length of database: 5,756,785 Effective search space: 149676410 Effective search space used: 149676410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.1 bits)