RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.227_1
         (37 letters)



>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea
          seedling (Pisum sativum) [TaxId: 3888]}
          Length = 441

 Score = 27.2 bits (60), Expect = 0.37
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 4  WGLYVSFSSRKGIFLYQNNFYTQEK 28
          W  ++ F  R GI +   + Y  EK
Sbjct: 37 WKFHIGFDVRAGIVISLASIYDLEK 61


>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3
          {Arthrobacter globiformis [TaxId: 1665]}
          Length = 417

 Score = 24.5 bits (53), Expect = 2.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 4  WGLYVSFSSRKGIFLYQNNFYTQEKE 29
          W L V F  R+G+ L+   F   ++ 
Sbjct: 32 WSLDVGFDVREGVVLHNIAFRDGDRL 57


>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
          (Pichia pastoris) [TaxId: 4922]}
          Length = 460

 Score = 24.6 bits (53), Expect = 2.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 4  WGLYVSFSSRKGIFLYQ 20
          WG Y S+S   GI  Y 
Sbjct: 32 WGFYTSWSRDTGISFYD 48


>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3
          {Escherichia coli [TaxId: 562]}
          Length = 424

 Score = 23.7 bits (51), Expect = 4.0
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 4  WGLYVSFSSRKGIFLYQ 20
          W  ++S +SR G  +  
Sbjct: 28 WDFHLSMNSRVGPMIST 44


>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3
          {Yeast (Hansenula polymorpha) [TaxId: 4905]}
          Length = 436

 Score = 23.7 bits (51), Expect = 4.8
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 4  WGLYVSFSSRKGIFLYQ 20
          +  ++ F+ R+GI L  
Sbjct: 28 FKFHIGFNYREGIVLSD 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 136,650
Number of extensions: 2843
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 5
Length of query: 37
Length of database: 2,407,596
Length adjustment: 10
Effective length of query: 27
Effective length of database: 2,270,296
Effective search space: 61297992
Effective search space used: 61297992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)