RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.227_1 (37 letters) >d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]} Length = 441 Score = 27.2 bits (60), Expect = 0.37 Identities = 8/25 (32%), Positives = 12/25 (48%) Query: 4 WGLYVSFSSRKGIFLYQNNFYTQEK 28 W ++ F R GI + + Y EK Sbjct: 37 WKFHIGFDVRAGIVISLASIYDLEK 61 >d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 417 Score = 24.5 bits (53), Expect = 2.4 Identities = 8/26 (30%), Positives = 13/26 (50%) Query: 4 WGLYVSFSSRKGIFLYQNNFYTQEKE 29 W L V F R+G+ L+ F ++ Sbjct: 32 WSLDVGFDVREGVVLHNIAFRDGDRL 57 >d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastoris) [TaxId: 4922]} Length = 460 Score = 24.6 bits (53), Expect = 2.6 Identities = 8/17 (47%), Positives = 9/17 (52%) Query: 4 WGLYVSFSSRKGIFLYQ 20 WG Y S+S GI Y Sbjct: 32 WGFYTSWSRDTGISFYD 48 >d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]} Length = 424 Score = 23.7 bits (51), Expect = 4.0 Identities = 5/17 (29%), Positives = 9/17 (52%) Query: 4 WGLYVSFSSRKGIFLYQ 20 W ++S +SR G + Sbjct: 28 WDFHLSMNSRVGPMIST 44 >d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Length = 436 Score = 23.7 bits (51), Expect = 4.8 Identities = 5/17 (29%), Positives = 10/17 (58%) Query: 4 WGLYVSFSSRKGIFLYQ 20 + ++ F+ R+GI L Sbjct: 28 FKFHIGFNYREGIVLSD 44 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.329 0.140 0.461 Gapped Lambda K H 0.267 0.0595 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 136,650 Number of extensions: 2843 Number of successful extensions: 25 Number of sequences better than 10.0: 1 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 5 Length of query: 37 Length of database: 2,407,596 Length adjustment: 10 Effective length of query: 27 Effective length of database: 2,270,296 Effective search space: 61297992 Effective search space used: 61297992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 47 (22.2 bits)