Query 537021.9.peg.232_1
Match_columns 46
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 15:59:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_232.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3kpb_A Uncharacterized protei 17.1 30 0.00088 17.3 -0.2 34 7-42 2-37 (63)
2 >2j6b_A AFV3-109; sulfolobus, 12.1 79 0.0023 15.4 0.8 30 2-34 46-75 (109)
3 >1jr5_A 10 kDa anti-sigma fact 10.9 1.5E+02 0.0046 14.0 2.1 33 1-33 1-33 (90)
4 >1tuj_A Odorant binding protei 9.5 92 0.0027 15.1 0.5 30 2-31 50-79 (90)
5 >3a7o_A Autophagy protein 16; 7.2 1.6E+02 0.0047 14.0 0.8 14 6-19 50-63 (75)
6 >1tt9_A Formimidoyltransferase 4.8 2.8E+02 0.0084 12.8 1.0 14 27-40 43-56 (60)
7 >1avo_B 11S regulator; proteas 4.4 2.9E+02 0.0086 12.8 0.8 17 3-19 24-40 (140)
8 >3i1m_B 30S ribosomal protein 4.2 2.4E+02 0.007 13.2 0.2 35 5-43 125-159 (196)
9 >2ap1_A Putative regulator pro 4.0 2.1E+02 0.0062 13.4 -0.2 23 19-41 70-92 (104)
10 >2j37_W Signal recognition par 3.8 3.1E+02 0.0092 12.6 0.6 32 7-38 5-36 (80)
No 1
>>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* (A:1-10,A:70-122)
Probab=17.15 E-value=30 Score=17.35 Aligned_cols=34 Identities=47% Similarity=0.531 Sum_probs=20.5
Q ss_pred HHHHHHHCCCCHHH--CCHHHHCCCHHHHHHHHHHEEE
Q ss_conf 99999714561544--0634405777786665420102
Q 537021.9.peg.2 7 LVKEIISLNIPRAI--ANIDEIDMNPKQKISKYVIPMV 42 (46)
Q Consensus 7 lvkeiislniprai--anideidmnpkqkiskyvipmv 42 (46)
|||.|.|- ||.. |.-||---.-.-|.|||-|.-|
T Consensus 2 lvkdilsk--prnvitahedepvdhvaikmskynisgv 37 (63)
T 3kpb_A 2 LVKDILSK--PRNVITAHEDEPVDHVAIKMSKYNISGV 37 (63)
T ss_dssp BHHHHCCS--CSSCCCEETTSBHHHHHHHHHHHTCSEE
T ss_pred CHHHCCCC--CCCCEEECCCCHHHHHHHHHHHCCCCEE
T ss_conf 95681889--9210899387319999999765374689
No 2
>>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} (A:)
Probab=12.07 E-value=79 Score=15.38 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHCCCCHHHCCHHHHCCCHHHHH
Q ss_conf 139999999971456154406344057777866
Q 537021.9.peg.2 2 AATIQLVKEIISLNIPRAIANIDEIDMNPKQKI 34 (46)
Q Consensus 2 aatiqlvkeiislnipraianideidmnpkqki 34 (46)
.+|+|++..+...|+|- |-.+|.+.|-+|+
T Consensus 46 ~aTA~lls~llg~~i~~---NRi~i~~~~GDka 75 (109)
T 2j6b_A 46 QATAELLSSILGVNVPM---NRVQIKVTHGDRI 75 (109)
T ss_dssp HHHHHHHHHHHTSCCCB---CCCCCCBCTTCEE
T ss_pred HHHHHHHHHHHCCCCCC---CCEEEEECCCCEE
T ss_conf 98999999985852243---6247995489889
No 3
>>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} (A:)
Probab=10.89 E-value=1.5e+02 Score=14.03 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHCCCCHHHCCHHHHCCCHHHH
Q ss_conf 913999999997145615440634405777786
Q 537021.9.peg.2 1 MAATIQLVKEIISLNIPRAIANIDEIDMNPKQK 33 (46)
Q Consensus 1 maatiqlvkeiislnipraianideidmnpkqk 33 (46)
|.+.|.+|+||++.-------..|+|-+|.+.-
T Consensus 1 mn~k~E~v~eIit~aSiLIK~~~edI~~~q~~F 33 (90)
T 1jr5_A 1 MNKNIDTVREIITVASILIKFSREDIVENRANF 33 (90)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 973299999999999999983699998719999
No 4
>>1tuj_A Odorant binding protein Asp2; alpha helix, complex, TSP, transport protein; HET: TSD; NMR {Apis mellifera} (A:34-123)
Probab=9.52 E-value=92 Score=15.07 Aligned_cols=30 Identities=40% Similarity=0.419 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHCCCCHHHCCHHHHCCCHH
Q ss_conf 139999999971456154406344057777
Q 537021.9.peg.2 2 AATIQLVKEIISLNIPRAIANIDEIDMNPK 31 (46)
Q Consensus 2 aatiqlvkeiislnipraianideidmnpk 31 (46)
|..|||||.|-.--|..|-...||-....|
T Consensus 50 addiqlvkgianecienakgetdecnignk 79 (90)
T 1tuj_A 50 ADDIQLVKGIANECIENAKGETDECNIGNK 79 (90)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 147899998889998734688654645774
No 5
>>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae} (A:)
Probab=7.23 E-value=1.6e+02 Score=13.99 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=9.5
Q ss_pred HHHHHHHHCCCCHH
Q ss_conf 99999971456154
Q 537021.9.peg.2 6 QLVKEIISLNIPRA 19 (46)
Q Consensus 6 qlvkeiislnipra 19 (46)
.|-.|+||+||-.-
T Consensus 50 rLNDElIslNIENN 63 (75)
T 3a7o_A 50 RLNDELISGTIENN 63 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 86288887478878
No 6
>>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A (A:272-331)
Probab=4.77 E-value=2.8e+02 Score=12.81 Aligned_cols=14 Identities=36% Similarity=0.999 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHE
Q ss_conf 57777866654201
Q 537021.9.peg.2 27 DMNPKQKISKYVIP 40 (46)
Q Consensus 27 dmnpkqkiskyvip 40 (46)
-.+|+.||-.|.++
T Consensus 43 pF~P~ekIIEY~v~ 56 (60)
T 1tt9_A 43 PFDPKERIIEYLVP 56 (60)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 66624689999872
No 7
>>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} (B:)
Probab=4.38 E-value=2.9e+02 Score=12.76 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCCHH
Q ss_conf 39999999971456154
Q 537021.9.peg.2 3 ATIQLVKEIISLNIPRA 19 (46)
Q Consensus 3 atiqlvkeiislnipra 19 (46)
.++..+|--|+|+|||-
T Consensus 24 e~~~~vk~WI~l~IPki 40 (140)
T 1avo_B 24 EQLNLVTTWLQLQIPRI 40 (140)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99889999999965633
No 8
>>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241)
Probab=4.24 E-value=2.4e+02 Score=13.19 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=20.7
Q ss_pred HHHHHHHHHCCCCHHHCCHHHHCCCHHHHHHHHHHEEEE
Q ss_conf 999999971456154406344057777866654201021
Q 537021.9.peg.2 5 IQLVKEIISLNIPRAIANIDEIDMNPKQKISKYVIPMVN 43 (46)
Q Consensus 5 iqlvkeiislnipraianideidmnpkqkiskyvipmvn 43 (46)
.+.++|-..|+||- |+ -+|.|-.-..-.|.||.-+
T Consensus 125 ~~ai~Ea~~l~IPv-I~---ivDTn~~p~~idypIP~Nd 159 (196)
T 3i1m_B 125 HIAIKEANNLGIPV-FA---IVDTNSDPDGVDFVIPGND 159 (196)
T ss_dssp HHHHHHHHHHTCCE-EE---ECCTTSCGGGCSBCCCSCS
T ss_pred HHHHHHHHHCCCCE-EE---ECCCCCCCCCCCEEEECCC
T ss_conf 89999999759976-75---2367788335887886888
No 9
>>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.90A {Salmonella typhimurium} (A:129-189,A:270-312)
Probab=4.03 E-value=2.1e+02 Score=13.43 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=18.4
Q ss_pred HHCCHHHHCCCHHHHHHHHHHEE
Q ss_conf 44063440577778666542010
Q 537021.9.peg.2 19 AIANIDEIDMNPKQKISKYVIPM 41 (46)
Q Consensus 19 aianideidmnpkqkiskyvipm 41 (46)
...|+||+--+-..+++.|+.|-
T Consensus 70 g~~n~~~~~~~~~~~~~~~~~~~ 92 (104)
T 2ap1_A 70 GLSNFTAITTQLAERLPRHLLPV 92 (104)
T ss_dssp GGGGSTHHHHSSGGGSGGGSCTT
T ss_pred CHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 03141779999999999863465
No 10
>>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A (W:44-95,W:286-313)
Probab=3.81 E-value=3.1e+02 Score=12.63 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCHHHCCHHHHCCCHHHHHHHHH
Q ss_conf 99999714561544063440577778666542
Q 537021.9.peg.2 7 LVKEIISLNIPRAIANIDEIDMNPKQKISKYV 38 (46)
Q Consensus 7 lvkeiislnipraianideidmnpkqkiskyv 38 (46)
+|+++++----|+...-.--..||+|.+-|.|
T Consensus 5 VVk~fi~~IKeka~geev~~glnp~q~IiKIV 36 (80)
T 2j37_W 5 LVKQLRENVKSAIDLEEMASGLNKRKMIQHAV 36 (80)
T ss_dssp TTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999970153567799899999999
Done!