RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.232_1 (46 letters) >gnl|CDD|180453 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated. Length = 521 Score = 28.2 bits (64), Expect = 0.47 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 16 IPRAIANIDEIDMNPKQKISKYVI 39 +P+ IA +DE+ KI K V+ Sbjct: 490 LPKRIAFVDELPRTSVGKILKRVL 513 >gnl|CDD|161700 TIGR00087, surE, 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology. Length = 244 Score = 25.0 bits (55), Expect = 4.1 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 1 MAATIQLVKEI-ISLNIPRAIANIDEIDMNPKQKISKYVI 39 M A I V I ISL I N +D + K++ ++ Sbjct: 114 MEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIV 153 >gnl|CDD|178648 PLN03100, PLN03100, Permease subunit of ER-derived-lipid transporter; Provisional. Length = 292 Score = 24.8 bits (54), Expect = 5.3 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 1 MAATIQLVKEIISLNIPRAIANI 23 M TIQ V+E L + R+I + Sbjct: 101 MVFTIQFVREFTKLGLTRSIGGV 123 >gnl|CDD|180016 PRK05325, PRK05325, hypothetical protein; Provisional. Length = 401 Score = 24.0 bits (53), Expect = 9.0 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Query: 5 IQLVKEIISLNIPRAIANIDEIDMNPKQKISKYVIP 40 ++ VKE I +P AI+ ID + + +S IP Sbjct: 10 LRRVKEQIKKALPDAISERSIIDSDGGEVVS---IP 42 >gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional. Length = 247 Score = 24.0 bits (53), Expect = 9.1 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 5/31 (16%) Query: 9 KEIISLNIPRAIANIDEID--MNPKQKISKY 37 +EI+ LNIP + + E+D + P I Y Sbjct: 198 EEILELNIPTGVPLVYELDENLKP---IKHY 225 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.133 0.347 Gapped Lambda K H 0.267 0.0727 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 721,439 Number of extensions: 27946 Number of successful extensions: 90 Number of sequences better than 10.0: 1 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 14 Length of query: 46 Length of database: 5,994,473 Length adjustment: 19 Effective length of query: 27 Effective length of database: 5,583,921 Effective search space: 150765867 Effective search space used: 150765867 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.0 bits)