RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.232_1
         (46 letters)



>gnl|CDD|180453 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 521

 Score = 28.2 bits (64), Expect = 0.47
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 16  IPRAIANIDEIDMNPKQKISKYVI 39
           +P+ IA +DE+      KI K V+
Sbjct: 490 LPKRIAFVDELPRTSVGKILKRVL 513


>gnl|CDD|161700 TIGR00087, surE, 5'/3'-nucleotidase SurE.  E. coli SurE is
           Recommended cutoffs are 15 for homology, 40 for probable
           orthology, and 200 for orthology with full-length
           homology.
          Length = 244

 Score = 25.0 bits (55), Expect = 4.1
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 1   MAATIQLVKEI-ISLNIPRAIANIDEIDMNPKQKISKYVI 39
           M A I  V  I ISL I     N   +D +   K++  ++
Sbjct: 114 MEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIV 153


>gnl|CDD|178648 PLN03100, PLN03100, Permease subunit of ER-derived-lipid
           transporter; Provisional.
          Length = 292

 Score = 24.8 bits (54), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 1   MAATIQLVKEIISLNIPRAIANI 23
           M  TIQ V+E   L + R+I  +
Sbjct: 101 MVFTIQFVREFTKLGLTRSIGGV 123


>gnl|CDD|180016 PRK05325, PRK05325, hypothetical protein; Provisional.
          Length = 401

 Score = 24.0 bits (53), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 5  IQLVKEIISLNIPRAIANIDEIDMNPKQKISKYVIP 40
          ++ VKE I   +P AI+    ID +  + +S   IP
Sbjct: 10 LRRVKEQIKKALPDAISERSIIDSDGGEVVS---IP 42


>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
          Length = 247

 Score = 24.0 bits (53), Expect = 9.1
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 5/31 (16%)

Query: 9   KEIISLNIPRAIANIDEID--MNPKQKISKY 37
           +EI+ LNIP  +  + E+D  + P   I  Y
Sbjct: 198 EEILELNIPTGVPLVYELDENLKP---IKHY 225


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.133    0.347 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 721,439
Number of extensions: 27946
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 14
Length of query: 46
Length of database: 5,994,473
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,583,921
Effective search space: 150765867
Effective search space used: 150765867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)