RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.232_1
         (46 letters)



>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
           subtilis [TaxId: 1423]}
          Length = 536

 Score = 24.2 bits (51), Expect = 3.3
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 16  IPRAIANIDEIDMNPKQKISKYVIP 40
           IP  +  ++        K+SK  + 
Sbjct: 502 IPDRVEFVESFPQTGVGKVSKKALR 526


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 24.1 bits (51), Expect = 3.4
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 16  IPRAIANIDEIDMNPKQKISKYVIP 40
           IP     +D++ +    KI +  +P
Sbjct: 484 IPSYFIQLDKMPLTSNGKIDRKQLP 508


>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
           {Thermus thermophilus [TaxId: 274]}
          Length = 534

 Score = 23.3 bits (49), Expect = 5.6
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 16  IPRAIANIDEIDMNPKQKISKYVIP 40
           +P A    +EI      K  K  + 
Sbjct: 500 LPDAYVFAEEIPRTSAGKFLKRALR 524


>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 23.0 bits (48), Expect = 7.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 9   KEIISLNIPRAIANIDEIDMNPKQKISKY 37
            EI+ LNIP  I    ++D   +  +   
Sbjct: 199 DEIVGLNIPTGIPLRYDLDSAMRPLVRGG 227


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.347 

Gapped
Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 161,280
Number of extensions: 4827
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 46
Length of database: 2,407,596
Length adjustment: 18
Effective length of query: 28
Effective length of database: 2,160,456
Effective search space: 60492768
Effective search space used: 60492768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)