Query 537021.9.peg.233_1 Match_columns 72 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Wed May 25 16:22:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_233.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 pfam03669 UPF0139 Uncharacteri 13.6 95 0.0024 13.9 1.3 18 1-18 1-18 (103) 2 smart00113 CALCITONIN calciton 12.4 41 0.0011 15.9 -0.8 19 53-71 6-24 (38) 3 PRK13376 pyrB bifunctional asp 11.9 1.3E+02 0.0033 13.1 1.6 13 37-49 449-461 (524) 4 TIGR01359 UMP_CMP_kin_fam UMP- 11.5 73 0.0019 14.5 0.2 20 42-62 52-71 (189) 5 KOG0423 consensus 10.5 1.4E+02 0.0036 12.9 1.4 21 2-23 65-92 (223) 6 PRK10508 hypothetical protein; 10.0 1E+02 0.0026 13.7 0.5 13 18-30 67-79 (333) 7 COG1781 PyrI Aspartate carbamo 9.1 1.6E+02 0.0041 12.6 1.2 14 36-49 79-92 (153) 8 pfam08821 CGGC CGGC domain. Th 9.0 1.2E+02 0.003 13.4 0.5 27 36-62 54-80 (107) 9 COG4390 Uncharacterized protei 8.9 1.1E+02 0.0029 13.4 0.4 11 7-17 75-85 (106) 10 PRK12288 ribosome-associated G 8.4 1E+02 0.0026 13.7 -0.0 15 23-37 149-163 (344) No 1 >pfam03669 UPF0139 Uncharacterized protein family (UPF0139). Probab=13.62 E-value=95 Score=13.87 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCCCCCCC Q ss_conf 966779989974376200 Q 537021.9.peg.2 1 MISKNNPRTPPKAHPNIL 18 (72) Q Consensus 1 misknnprtppkahpnil 18 (72) |-+.|.||.|-++++-+- T Consensus 1 ~~~~~DPRrP~~~~~y~p 18 (103) T pfam03669 1 MAGVNDPRRPSKAKRYKP 18 (103) T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 998889998240126779 No 2 >smart00113 CALCITONIN calcitonin. This family is formed by calcitonin, the calcitonin gene-related peptide, and amylin. They are short polypeptide hormones. Probab=12.41 E-value=41 Score=15.90 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=16.1 Q ss_pred EEEEEHCCCCCHHHHHCCC Q ss_conf 4200000164113442077 Q 537021.9.peg.2 53 IATCLLLKNSDTLSKSIGY 71 (72) Q Consensus 53 iatclllknsdtlsksigy 71 (72) .+||.|-+-+|.|.++-+| T Consensus 6 lsTCVlg~l~~dL~~~~tf 24 (38) T smart00113 6 LSTCVLGRLADDLNRSHTY 24 (38) T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 0478888899998874026 No 3 >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional Probab=11.87 E-value=1.3e+02 Score=13.11 Aligned_cols=13 Identities=62% Similarity=0.910 Sum_probs=9.2 Q ss_pred CEEEEEEECCCEE Q ss_conf 3058898329899 Q 537021.9.peg.2 37 DTTVNIIKNNGII 49 (72) Q Consensus 37 dttvniiknngii 49 (72) .||||||||..+. T Consensus 449 nttvniik~~~v~ 461 (524) T PRK13376 449 NTTVNIIKNSRVV 461 (524) T ss_pred CCEEEEEECCEEE T ss_conf 8668885076132 No 4 >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process. Probab=11.48 E-value=73 Score=14.51 Aligned_cols=20 Identities=40% Similarity=0.380 Sum_probs=15.7 Q ss_pred EEECCCEEEEEEEEEEHCCCC Q ss_conf 983298999754200000164 Q 537021.9.peg.2 42 IIKNNGIIVIIIATCLLLKNS 62 (72) Q Consensus 42 iiknngiiviiiatclllkns 62 (72) .| +||-||-..-||-||+|. T Consensus 52 ~I-keG~IVPs~VTv~LL~ka 71 (189) T TIGR01359 52 YI-KEGKIVPSEVTVELLKKA 71 (189) T ss_pred HH-HCCCEEHHEEEHHHHHHH T ss_conf 41-158311122324588877 No 5 >KOG0423 consensus Probab=10.53 E-value=1.4e+02 Score=12.92 Aligned_cols=21 Identities=52% Similarity=0.993 Sum_probs=15.8 Q ss_pred CCCCCCCCCCCC-------CCCCCCCCCC Q ss_conf 667799899743-------7620027852 Q 537021.9.peg.2 2 ISKNNPRTPPKA-------HPNILSSNTE 23 (72) Q Consensus 2 isknnprtppka-------hpnilssnte 23 (72) .||.-|.+|||+ |||.-+ |-| T Consensus 65 L~kDFP~sPPKgYFlTKIFHPNVaa-NGE 92 (223) T KOG0423 65 LSKDFPHSPPKGYFLTKIFHPNVAA-NGE 92 (223) T ss_pred HCCCCCCCCCCCEEEEEECCCCCCC-CCE T ss_conf 2478899998532332201677566-761 No 6 >PRK10508 hypothetical protein; Provisional Probab=10.00 E-value=1e+02 Score=13.65 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.1 Q ss_pred CCCCCCEEEEEEE Q ss_conf 0278526899999 Q 537021.9.peg.2 18 LSSNTERIRIGVL 30 (72) Q Consensus 18 lssnteririgvl 30 (72) +.+.|+|||+|-- T Consensus 67 laa~T~~IRvGSG 79 (333) T PRK10508 67 LAANTTTLHLGSG 79 (333) T ss_pred HHHHCCCEEEECC T ss_conf 9851896256234 No 7 >COG1781 PyrI Aspartate carbamoyltransferase, regulatory subunit [Nucleotide transport and metabolism] Probab=9.08 E-value=1.6e+02 Score=12.59 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=10.1 Q ss_pred CCEEEEEEECCCEE Q ss_conf 43058898329899 Q 537021.9.peg.2 36 IDTTVNIIKNNGII 49 (72) Q Consensus 36 idttvniiknngii 49 (72) -+.|||||+|--+. T Consensus 79 P~ATvNiI~ny~Vv 92 (153) T COG1781 79 PNATVNIIRNYEVV 92 (153) T ss_pred CCCEEEEEECEEEE T ss_conf 98779885040889 No 8 >pfam08821 CGGC CGGC domain. This putative domain contains a quite highly conserved sequence of CGGC in its central region. The domain has many conserved cysteines and histidines suggestive of a zinc binding function. Probab=8.98 E-value=1.2e+02 Score=13.36 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=19.8 Q ss_pred CCEEEEEEECCCEEEEEEEEEEHCCCC Q ss_conf 430588983298999754200000164 Q 537021.9.peg.2 36 IDTTVNIIKNNGIIVIIIATCLLLKNS 62 (72) Q Consensus 36 idttvniiknngiiviiiatclllkns 62 (72) +-.-+...|.+|+-+|-+++|+...|. T Consensus 54 ~~~~~~~lk~~~~d~IHlasC~~~~~~ 80 (107) T pfam08821 54 VVHLIKKLKKNGADTIHLSSCIRKGNP 80 (107) T ss_pred HHHHHHHHHHCCCCEEEECCCEECCCC T ss_conf 999999998779999997565614898 No 9 >COG4390 Uncharacterized protein conserved in bacteria [Function unknown] Probab=8.87 E-value=1.1e+02 Score=13.43 Aligned_cols=11 Identities=55% Similarity=0.969 Sum_probs=7.6 Q ss_pred CCCCCCCCCCC Q ss_conf 98997437620 Q 537021.9.peg.2 7 PRTPPKAHPNI 17 (72) Q Consensus 7 prtppkahpni 17 (72) .|.-|-+|||| T Consensus 75 Ar~hPGkHPNi 85 (106) T COG4390 75 ARAHPGKHPNI 85 (106) T ss_pred HHHCCCCCCCH T ss_conf 87299989989 No 10 >PRK12288 ribosome-associated GTPase; Reviewed Probab=8.42 E-value=1e+02 Score=13.72 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=0.0 Q ss_pred CEEEEEEEEEEECCC Q ss_conf 268999999984043 Q 537021.9.peg.2 23 ERIRIGVLIIFNKID 37 (72) Q Consensus 23 eririgvliifnkid 37 (72) |-..|-.+|+|||+| T Consensus 149 e~~~I~pvIvlNK~D 163 (344) T PRK12288 149 ETLGIEPLIVLNKID 163 (344) T ss_pred HHCCCCEEEEEECHH T ss_conf 986997799973144 Done!