Query 537021.9.peg.233_1 Match_columns 72 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 16:08:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_233.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2bn5_B U1 small nuclear ribon 10.1 97 0.0029 13.5 0.8 14 10-23 2-15 (26) 2 >1pg5_B Aspartate carbamoyltra 7.6 1.6E+02 0.0049 12.2 1.8 13 37-49 88-100 (106) 3 >2k3m_A RV1761C; protein, inte 6.6 88 0.0026 13.7 -0.7 17 13-29 65-81 (151) 4 >3c5j_B MHC class II antigen; 6.2 2E+02 0.0058 11.7 2.5 22 17-38 16-37 (90) 5 >2ond_A Cleavage stimulation f 5.9 2E+02 0.006 11.7 0.9 14 59-72 14-27 (29) 6 >2yww_A Aspartate carbamoyltra 5.5 2.2E+02 0.0064 11.5 1.8 13 37-49 79-91 (97) 7 >3ir9_A Peptide chain release 5.2 89 0.0026 13.7 -1.4 30 26-55 62-91 (116) 8 >3fim_B ARYL-alcohol oxidase; 5.2 2.2E+02 0.0066 11.4 1.4 20 3-22 252-271 (331) 9 >2be7_D Aspartate carbamoyltra 5.1 2.3E+02 0.0068 11.4 1.5 12 37-48 79-90 (98) 10 >1kqf_B FDH-N beta, formate de 4.7 2.4E+02 0.0072 11.2 1.2 14 3-16 12-25 (49) No 1 >>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} (B:) Probab=10.15 E-value=97 Score=13.46 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=9.7 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 97437620027852 Q 537021.9.peg.2 10 PPKAHPNILSSNTE 23 (72) Q Consensus 10 ppkahpnilssnte 23 (72) ||.||-|..|.-.. T Consensus 2 pppahhnmfsvppp 15 (26) T 2bn5_B 2 PPPAHHNMFSVPPP 15 (26) T ss_dssp CCCCCCCCCSCCCC T ss_pred CCCCCCCCCCCCCC T ss_conf 78763761047998 No 2 >>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} (B:1-106) Probab=7.64 E-value=1.6e+02 Score=12.18 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=8.6 Q ss_pred CEEEEEEECCCEE Q ss_conf 3058898329899 Q 537021.9.peg.2 37 DTTVNIIKNNGII 49 (72) Q Consensus 37 dttvniiknngii 49 (72) +.|||||+|.-+. T Consensus 88 ~aTvNiI~d~~Vv 100 (106) T 1pg5_B 88 TATINIVREYEVV 100 (106) T ss_dssp TCEEEEEETTEEE T ss_pred CCEEEEEECCEEE T ss_conf 9889997186888 No 3 >>2k3m_A RV1761C; protein, integral membrane protein; HET: MTN; NMR {Mycobacterium tuberculosis} (A:) Probab=6.62 E-value=88 Score=13.68 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=12.9 Q ss_pred CCCCCCCCCCCEEEEEE Q ss_conf 37620027852689999 Q 537021.9.peg.2 13 AHPNILSSNTERIRIGV 29 (72) Q Consensus 13 ahpnilssnteririgv 29 (72) |......||.|||.||- T Consensus 65 arrg~fr~~peri~igd 81 (151) T 2k3m_A 65 ARRGFFRCNPERIQIGD 81 (151) T ss_dssp SSSSCCSCCSSCCSCCC T ss_pred HHCCCCCCCCCEEEECC T ss_conf 44263238810267533 No 4 >>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune response, membrane, MHC II, polymorphism, transmembrane, GTP-binding; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B 1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B* 2wbj_B* 1ymm_B* 1fyt_B* 1seb_B 1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B 2fse_B 1r5v_B 1r5w_B (B:1-90) Probab=6.16 E-value=2e+02 Score=11.74 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=18.5 Q ss_pred CCCCCCCEEEEEEEEEEECCCE Q ss_conf 0027852689999999840430 Q 537021.9.peg.2 17 ILSSNTERIRIGVLIIFNKIDT 38 (72) Q Consensus 17 ilssnteririgvliifnkidt 38 (72) ..|+.++++|.=.-.||||..- T Consensus 16 ~fsng~~~v~~i~r~~yNk~e~ 37 (90) T 3c5j_B 16 HFFNGTERVRFLERYFHNQEEF 37 (90) T ss_dssp EEETTTTEEEEEEEEEETTEEE T ss_pred EEECCCEEEEEEEEEEECCCEE T ss_conf 9987984699999998888279 No 5 >>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} (A:280-308) Probab=5.93 E-value=2e+02 Score=11.66 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=9.1 Q ss_pred CCCCCHHHHHCCCC Q ss_conf 01641134420779 Q 537021.9.peg.2 59 LKNSDTLSKSIGYR 72 (72) Q Consensus 59 lknsdtlsksigyr 72 (72) +.-|..--||+||+ T Consensus 14 ~Pcs~~eLks~Gy~ 27 (29) T 2ond_A 14 YPCSASELKALGYK 27 (29) T ss_dssp CSSCHHHHHTTTCC T ss_pred CCCCHHHHHHHCCC T ss_conf 87999999975265 No 6 >>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii} (A:1-97) Probab=5.46 E-value=2.2e+02 Score=11.50 Aligned_cols=13 Identities=46% Similarity=0.874 Sum_probs=8.6 Q ss_pred CEEEEEEECCCEE Q ss_conf 3058898329899 Q 537021.9.peg.2 37 DTTVNIIKNNGII 49 (72) Q Consensus 37 dttvniiknngii 49 (72) ..|||||+|.-+. T Consensus 79 ~aTvNiI~d~~Vv 91 (97) T 2yww_A 79 DVTINIIRNGKVV 91 (97) T ss_dssp TCEEEEEETTEEE T ss_pred CCEEEEEECCEEE T ss_conf 9889997276888 No 7 >>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:1-71,A:122-166) Probab=5.24 E-value=89 Score=13.67 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=25.5 Q ss_pred EEEEEEEEECCCEEEEEEECCCEEEEEEEE Q ss_conf 999999984043058898329899975420 Q 537021.9.peg.2 26 RIGVLIIFNKIDTTVNIIKNNGIIVIIIAT 55 (72) Q Consensus 26 rigvliifnkidttvniiknngiiviiiat 55 (72) .+..|++..++|-.++..+.+|.-|.++.+ T Consensus 62 AVetLLIsD~i~~~~~~~~~~g~~v~v~s~ 91 (116) T 3ir9_A 62 SVDVLLLSEDVDEFSELADKSNAKVVFVST 91 (116) T ss_dssp CEEEEEEETTHHHHHHHHHHTTCEEEEECS T ss_pred CCCEEEEECCHHHHHHHHHHCCCEEEEECC T ss_conf 776999841499999999974988999889 No 8 >>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} (B:119-214,B:273-507) Probab=5.23 E-value=2.2e+02 Score=11.41 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=11.6 Q ss_pred CCCCCCCCCCCCCCCCCCCC Q ss_conf 67799899743762002785 Q 537021.9.peg.2 3 SKNNPRTPPKAHPNILSSNT 22 (72) Q Consensus 3 sknnprtppkahpnilssnt 22 (72) .-++|+.+|.-+||.|+... T Consensus 252 ~S~dp~~~P~Idpnyls~~~ 271 (331) T 3fim_B 252 ATSNPFDKPLINPQYLSTEF 271 (331) T ss_dssp SSSCTTSCCEEECCTTCSHH T ss_pred CCCCCCCCCEEEECCCCCHH T ss_conf 68997668466305443135 No 9 >>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, allosteric, holoenzyme; 2.85A {Moritella profunda} (D:1-98) Probab=5.12 E-value=2.3e+02 Score=11.37 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=7.9 Q ss_pred CEEEEEEECCCE Q ss_conf 305889832989 Q 537021.9.peg.2 37 DTTVNIIKNNGI 48 (72) Q Consensus 37 dttvniiknngi 48 (72) +.|||||+|.-+ T Consensus 79 ~aTvNiI~d~~V 90 (98) T 2be7_D 79 NATINIIENFKV 90 (98) T ss_dssp TCCEEEEETTEE T ss_pred CCEEEEEECCEE T ss_conf 988999727688 No 10 >>1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (B:1-21,B:111-138) Probab=4.72 E-value=2.4e+02 Score=11.21 Aligned_cols=14 Identities=50% Similarity=0.750 Sum_probs=10.5 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 67799899743762 Q 537021.9.peg.2 3 SKNNPRTPPKAHPN 16 (72) Q Consensus 3 sknnprtppkahpn 16 (72) |..|.-|||.|-|. T Consensus 12 satnsitppsACPs 25 (49) T 1kqf_B 12 SATNSITPPSACPS 25 (49) T ss_dssp TTCCTTSCCCHCCS T ss_pred HCCCCCCCCCCCCC T ss_conf 43467799840444 Done!