Query 537021.9.peg.233_1
Match_columns 72
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 16:08:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_233.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fb5_A Hypothetical membrane s 10.6 87 0.0037 12.9 1.5 28 42-72 139-167 (205)
2 2bn5_B U1 small nuclear ribonu 9.6 73 0.0031 13.3 0.8 13 10-22 2-14 (26)
3 2rcn_A Probable GTPase ENGC; Y 8.2 1.1E+02 0.0046 12.3 1.5 12 27-38 161-172 (358)
4 2k3m_A RV1761C; protein, integ 7.3 55 0.0023 14.0 -0.7 17 13-29 65-81 (151)
5 1t9h_A YLOQ, probable GTPase E 6.4 1.3E+02 0.0056 11.8 1.5 12 27-38 118-129 (307)
6 1u0l_A Probable GTPase ENGC; p 5.6 1.5E+02 0.0063 11.5 1.2 13 26-38 115-127 (301)
7 2yww_A Aspartate carbamoyltran 5.2 1.6E+02 0.0067 11.4 1.8 13 37-49 79-91 (149)
8 2yv5_A YJEQ protein; hydrolase 4.9 1.7E+02 0.007 11.3 1.2 12 27-38 111-122 (302)
9 1wib_A 60S ribosomal protein L 4.6 1.7E+02 0.0073 11.2 0.7 10 8-17 6-15 (92)
10 1lpv_A Doublesex protein; tran 4.5 1.8E+02 0.0075 11.1 0.9 7 6-12 3-9 (52)
No 1
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structure initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=10.59 E-value=87 Score=12.87 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=16.6
Q ss_pred EEECCCEEEEEEEEEEH-CCCCCHHHHHCCCC
Q ss_conf 98329899975420000-01641134420779
Q 537021.9.peg.2 42 IIKNNGIIVIIIATCLL-LKNSDTLSKSIGYR 72 (72)
Q Consensus 42 iiknngiiviiiatcll-lknsdtlsksigyr 72 (72)
||.++ .|+.|.|.| +..+..+++..|-|
T Consensus 139 II~~~---~I~~a~~~lpls~~~~~~~~lGtR 167 (205)
T 2fb5_A 139 LVKNN---HIVSAANILPLTKSTEVDPELGTR 167 (205)
T ss_dssp EEETT---EEEEEEEBCCCCCCTTSCTTCCHH
T ss_pred EEECC---EEEEEEEEECCCCCCCCCCCCCHH
T ss_conf 99899---799987540589777868766578
No 2
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=9.62 E-value=73 Score=13.28 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 9743762002785
Q 537021.9.peg.2 10 PPKAHPNILSSNT 22 (72)
Q Consensus 10 ppkahpnilssnt 22 (72)
||.||-|..|.-.
T Consensus 2 pppahhnmfsvpp 14 (26)
T 2bn5_B 2 PPPAHHNMFSVPP 14 (26)
T ss_dssp CCCCCCCCCSCCC
T ss_pred CCCCCCCCCCCCC
T ss_conf 7876376104799
No 3
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium LT2}
Probab=8.24 E-value=1.1e+02 Score=12.33 Aligned_cols=12 Identities=50% Similarity=0.778 Sum_probs=5.5
Q ss_pred EEEEEEEECCCE
Q ss_conf 999999840430
Q 537021.9.peg.2 27 IGVLIIFNKIDT 38 (72)
Q Consensus 27 igvliifnkidt 38 (72)
|-++|+|||+|-
T Consensus 161 i~pvIvlnK~DL 172 (358)
T 2rcn_A 161 VEPLIVLNKIDL 172 (358)
T ss_dssp CEEEEEEECGGG
T ss_pred CCEEEEEECCCC
T ss_conf 968999978898
No 4
>2k3m_A RV1761C; protein, integral membrane protein; HET: MTN; NMR {Mycobacterium tuberculosis}
Probab=7.26 E-value=55 Score=13.98 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCEEEEEE
Q ss_conf 37620027852689999
Q 537021.9.peg.2 13 AHPNILSSNTERIRIGV 29 (72)
Q Consensus 13 ahpnilssnteririgv 29 (72)
|.-..+.||.|||.||-
T Consensus 65 ARRGffRs~PERiqIGD 81 (151)
T 2k3m_A 65 ARRGFFRCNPERIQIGD 81 (151)
T ss_dssp SSSSCCSCCSSCCSCCC
T ss_pred HHCCCCCCCCCEEEECC
T ss_conf 33241027940367533
No 5
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=6.41 E-value=1.3e+02 Score=11.82 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=7.2
Q ss_pred EEEEEEEECCCE
Q ss_conf 999999840430
Q 537021.9.peg.2 27 IGVLIIFNKIDT 38 (72)
Q Consensus 27 igvliifnkidt 38 (72)
|-++|+|||+|-
T Consensus 118 i~~vivlnK~DL 129 (307)
T 1t9h_A 118 IQPIICITKMDL 129 (307)
T ss_dssp CEEEEEEECGGG
T ss_pred CCEEEEEECHHC
T ss_conf 948999963201
No 6
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=5.60 E-value=1.5e+02 Score=11.55 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=8.1
Q ss_pred EEEEEEEEECCCE
Q ss_conf 9999999840430
Q 537021.9.peg.2 26 RIGVLIIFNKIDT 38 (72)
Q Consensus 26 rigvliifnkidt 38 (72)
.|-++|+|||+|-
T Consensus 115 ~i~pvIvlnK~DL 127 (301)
T 1u0l_A 115 ELETVMVINKMDL 127 (301)
T ss_dssp TCEEEEEECCGGG
T ss_pred CCCEEEEEECCCC
T ss_conf 9978999976567
No 7
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=5.15 E-value=1.6e+02 Score=11.38 Aligned_cols=13 Identities=46% Similarity=0.874 Sum_probs=9.1
Q ss_pred CEEEEEEECCCEE
Q ss_conf 3058898329899
Q 537021.9.peg.2 37 DTTVNIIKNNGII 49 (72)
Q Consensus 37 dttvniiknngii 49 (72)
+.|||||+|-.+.
T Consensus 79 ~aTVNiI~d~~Vv 91 (149)
T 2yww_A 79 DVTINIIRNGKVV 91 (149)
T ss_dssp TCEEEEEETTEEE
T ss_pred CCEEEEEECCEEE
T ss_conf 9889997287889
No 8
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=4.93 E-value=1.7e+02 Score=11.29 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=7.8
Q ss_pred EEEEEEEECCCE
Q ss_conf 999999840430
Q 537021.9.peg.2 27 IGVLIIFNKIDT 38 (72)
Q Consensus 27 igvliifnkidt 38 (72)
|-++|+|||.|-
T Consensus 111 i~~vivlnK~DL 122 (302)
T 2yv5_A 111 VEPVIVFNKIDL 122 (302)
T ss_dssp CEEEEEECCGGG
T ss_pred CCEEEEEECCCC
T ss_conf 976999976435
No 9
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=4.65 E-value=1.7e+02 Score=11.18 Aligned_cols=10 Identities=50% Similarity=0.796 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q ss_conf 8997437620
Q 537021.9.peg.2 8 RTPPKAHPNI 17 (72)
Q Consensus 8 rtppkahpni 17 (72)
-.|||.+||.
T Consensus 6 ~~PpK~dpn~ 15 (92)
T 1wib_A 6 SGPPKFDPNE 15 (92)
T ss_dssp CCCCCCCSSS
T ss_pred CCCCCCCCCC
T ss_conf 8989889780
No 10
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=4.51 E-value=1.8e+02 Score=11.12 Aligned_cols=7 Identities=71% Similarity=1.507 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 9989974
Q 537021.9.peg.2 6 NPRTPPK 12 (72)
Q Consensus 6 nprtppk 12 (72)
.||+||+
T Consensus 3 ~p~~~p~ 9 (52)
T 1lpv_A 3 SPRTPPN 9 (52)
T ss_dssp CCCCCSS
T ss_pred CCCCCCC
T ss_conf 8887987
Done!