RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.233_1
         (72 letters)



>3ir9_A Peptide chain release factor subunit 1; structural
          genomics, APC36528.1, C-terminal domain, PSI-2, protein
          structure initiative; 2.21A {Methanosarcina mazei}
          (A:1-71,A:122-166)
          Length = 116

 Score = 28.0 bits (63), Expect = 0.51
 Identities = 5/29 (17%), Positives = 14/29 (48%)

Query: 27 IGVLIIFNKIDTTVNIIKNNGIIVIIIAT 55
          + VL++   +D    +   +   V+ ++T
Sbjct: 63 VDVLLLSEDVDEFSELADKSNAKVVFVST 91


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 502,830
Number of extensions: 16959
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 72
Length of database: 4,956,049
Length adjustment: 38
Effective length of query: 34
Effective length of database: 3,671,459
Effective search space: 124829606
Effective search space used: 124829606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)