RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.233_1
         (72 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.7 bits (69), Expect = 0.083
 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 23/78 (29%)

Query: 8   RTPPKAHPNIL--SSNTERIRIGVLIIFN---KIDTTVN-----------IIKNNGIIVI 51
           R   K   + L  +      ++    IF      D               ++ +   ++ 
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGD---LIK 189

Query: 52  IIATCL--LLKNSDTLSK 67
             A  L  L++ +    K
Sbjct: 190 FSAETLSELIRTTLDAEK 207



 Score = 28.0 bits (62), Expect = 0.53
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 13/45 (28%)

Query: 27  IGVLIIFNKIDTTVNIIKNNGIIVIIIATCLLLKNSDTLSKSIGY 71
           +GVL   NK D T       G+ VI+  T  L  N D      G+
Sbjct: 512 LGVLTHRNK-DGT-------GVRVIVAGT--LDINPDD---DYGF 543


>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
           glucanase, carbohydrate metabolism, cellulose
           degradation, glycosidase; HET: BTB; 2.10A {Clostridium
           cellulovorans}
          Length = 515

 Score = 27.7 bits (61), Expect = 0.59
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 33  FNKIDTTVNIIKNNGIIVII 52
             +++   N   +N + VII
Sbjct: 85  MKRVEEIANYAFDNDMYVII 104


>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
          hydrolase; HET: NAD; 2.3A {Flavobacterium
          meningosepticum} PDB: 2ixb_A*
          Length = 444

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 10 PPKAHPNILSSNTERIRIGVL 30
          P     NI   N +++RI  +
Sbjct: 6  PSSTLFNIFDFNPKKVRIAFI 26


>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of
           glycosyl hydrolase, cellulose degradation; 1.60A
           {Clostridium cellulolyticum H10} SCOP: c.1.8.3
          Length = 380

 Score = 24.4 bits (52), Expect = 6.1
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 33  FNKIDTTVNIIKNNGIIVII 52
            N++   VN   +N + VI+
Sbjct: 100 MNRVQEVVNYCIDNKMYVIL 119


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 599,589
Number of extensions: 22357
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 13
Length of query: 72
Length of database: 5,693,230
Length adjustment: 42
Effective length of query: 30
Effective length of database: 4,674,982
Effective search space: 140249460
Effective search space used: 140249460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)