Query 537021.9.peg.237_1 Match_columns 50 No_of_seqs 7 out of 9 Neff 1.9 Searched_HMMs 39220 Date Wed May 25 16:22:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_237.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 pfam05297 Herpes_LMP1 Herpesvi 78.9 5.2 0.00013 20.1 5.5 42 2-43 144-189 (382) 2 pfam05814 DUF843 Baculovirus p 56.7 17 0.00043 17.6 5.2 30 1-30 1-31 (83) 3 pfam06129 Chordopox_G3 Chordop 53.4 9.5 0.00024 18.8 2.1 28 22-49 3-30 (109) 4 PRK05886 yajC preprotein trans 39.1 21 0.00053 17.1 2.0 21 1-21 6-26 (108) 5 pfam11395 DUF2873 Protein of u 31.7 45 0.0011 15.4 3.2 23 22-44 14-36 (43) 6 COG3548 Predicted integral mem 30.0 34 0.00086 16.0 1.8 13 31-43 61-73 (197) 7 KOG2678 consensus 29.3 49 0.0013 15.2 3.1 24 17-40 209-232 (244) 8 PRK00442 tatA twin arginine tr 20.6 74 0.0019 14.3 2.6 17 23-39 5-21 (90) 9 COG4984 Predicted membrane pro 19.5 79 0.002 14.2 2.9 17 2-18 260-276 (644) 10 pfam10831 DUF2556 Protein of u 18.5 80 0.002 14.2 1.9 15 26-40 6-20 (53) No 1 >pfam05297 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Probab=78.93 E-value=5.2 Score=20.10 Aligned_cols=42 Identities=29% Similarity=0.603 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4679999999999984103----47999999999999999988632 Q 537021.9.peg.2 2 FLPFLIAFLVSISLILKQR----KISYILLLILFIITILLFKYHAT 43 (50) Q Consensus 2 FlPFLiAl~~~~~~i~~k~----klsY~Lw~iL~iitil~Fk~Hat 43 (50) ||.|+.|....+-+.+-++ -+.-.+|++||.-++.|.-+|.. T Consensus 144 ~LAFlLAIilLIIAv~LhqaW~T~LvDL~WLlLFLaILIW~Y~Hgp 189 (382) T pfam05297 144 FLAFFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWMYYHGP 189 (382) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999999999999999999999999999999751277 No 2 >pfam05814 DUF843 Baculovirus protein of unknown function (DUF843). This family consists of several Baculovirus proteins of around 85 residues long with no known function. Probab=56.70 E-value=17 Score=17.55 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=21.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH Q ss_conf 946799999999999841034-799999999 Q 537021.9.peg.2 1 MFLPFLIAFLVSISLILKQRK-ISYILLLIL 30 (50) Q Consensus 1 MFlPFLiAl~~~~~~i~~k~k-lsY~Lw~iL 30 (50) |++.+++.-.++.+.++.|.. -|-.+..+| T Consensus 1 M~~y~~~~~Liv~~fi~dk~e~~s~li~~~l 31 (83) T pfam05814 1 MLIYFLFIALIVLAFIFDKNEGSSELILTLL 31 (83) T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 9089999999999999704566278999999 No 3 >pfam06129 Chordopox_G3 Chordopoxvirus G3 protein. This family consists of several Chordopoxvirus specific G3 proteins. The function of this family is unknown. Probab=53.37 E-value=9.5 Score=18.78 Aligned_cols=28 Identities=36% Similarity=0.820 Sum_probs=24.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 7999999999999999988632220024 Q 537021.9.peg.2 22 ISYILLLILFIITILLFKYHATNNINLS 49 (50) Q Consensus 22 lsY~Lw~iL~iitil~Fk~Hat~~lnLS 49 (50) +-|.+.+++|++...-|+|+-||-+.++ T Consensus 3 ll~l~fFi~Fl~l~Y~~n~~PTNKlqla 30 (109) T pfam06129 3 LLYLLFFILFLLLCYFFNYYPTNKLQLA 30 (109) T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 5289999999999998630467158875 No 4 >PRK05886 yajC preprotein translocase subunit YajC; Validated Probab=39.12 E-value=21 Score=17.07 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=13.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHH Q ss_conf 946799999999999841034 Q 537021.9.peg.2 1 MFLPFLIAFLVSISLILKQRK 21 (50) Q Consensus 1 MFlPFLiAl~~~~~~i~~k~k 21 (50) +|+|+++-|++-.=.+.+++| T Consensus 6 ~flPlili~~vf~f~~iRpQk 26 (108) T PRK05886 6 LFLPFLLIMGGFMYFASRRQR 26 (108) T ss_pred HHHHHHHHHHHHHHHHCCHHH T ss_conf 999999999999999316899 No 5 >pfam11395 DUF2873 Protein of unknown function (DUF2873). This viral family of proteins has no known function. Probab=31.69 E-value=45 Score=15.41 Aligned_cols=23 Identities=22% Similarity=0.707 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 79999999999999999886322 Q 537021.9.peg.2 22 ISYILLLILFIITILLFKYHATN 44 (50) Q Consensus 22 lsY~Lw~iL~iitil~Fk~Hat~ 44 (50) +.+.|.++|....+|||.-...| T Consensus 14 lafllflvlimliifwfsleiqd 36 (43) T pfam11395 14 LAFLLFLVLIMLIIFWFSLEIQD 36 (43) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999862302 No 6 >COG3548 Predicted integral membrane protein [Function unknown] Probab=30.01 E-value=34 Score=16.04 Aligned_cols=13 Identities=23% Similarity=0.628 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999988632 Q 537021.9.peg.2 31 FIITILLFKYHAT 43 (50) Q Consensus 31 ~iitil~Fk~Hat 43 (50) ++++++||+||.. T Consensus 61 ~~v~~~W~n~h~~ 73 (197) T COG3548 61 LVVAIFWFNHHRI 73 (197) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 7 >KOG2678 consensus Probab=29.32 E-value=49 Score=15.20 Aligned_cols=24 Identities=29% Similarity=0.532 Sum_probs=19.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 410347999999999999999988 Q 537021.9.peg.2 17 LKQRKISYILLLILFIITILLFKY 40 (50) Q Consensus 17 ~~k~klsY~Lw~iL~iitil~Fk~ 40 (50) +.|+|.+|-+...++|+.++.|.- T Consensus 209 y~ksk~s~wf~~~miI~v~~sFVs 232 (244) T KOG2678 209 YDKSKLSYWFYITMIIFVILSFVS 232 (244) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 878633679999999999999999 No 8 >PRK00442 tatA twin arginine translocase protein A; Provisional Probab=20.63 E-value=74 Score=14.31 Aligned_cols=17 Identities=12% Similarity=0.620 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998 Q 537021.9.peg.2 23 SYILLLILFIITILLFK 39 (50) Q Consensus 23 sY~Lw~iL~iitil~Fk 39 (50) |..-|+|.++|.++.|- T Consensus 5 s~~hwlivl~iv~llFG 21 (90) T PRK00442 5 DWKHWIVILVVVVLVFG 21 (90) T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 69999999999999946 No 9 >COG4984 Predicted membrane protein [Function unknown] Probab=19.49 E-value=79 Score=14.17 Aligned_cols=17 Identities=47% Similarity=0.595 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 46799999999999841 Q 537021.9.peg.2 2 FLPFLIAFLVSISLILK 18 (50) Q Consensus 2 FlPFLiAl~~~~~~i~~ 18 (50) ++-+++++++++++|.| T Consensus 260 ~~~~Ll~~l~~ig~iag 276 (644) T COG4984 260 FLVTLLAFLGTIGAIAG 276 (644) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999998747 No 10 >pfam10831 DUF2556 Protein of unknown function (DUF2556). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. Probab=18.54 E-value=80 Score=14.15 Aligned_cols=15 Identities=27% Similarity=0.727 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999988 Q 537021.9.peg.2 26 LLLILFIITILLFKY 40 (50) Q Consensus 26 Lw~iL~iitil~Fk~ 40 (50) -|++.|-+++|.|.- T Consensus 6 wwlvvfav~vflfda 20 (53) T pfam10831 6 WWLVVFAVSVFLFDA 20 (53) T ss_pred HHHHHHHHHHHHHHH T ss_conf 358999999999999 Done!