Query         537021.9.peg.237_1
Match_columns 50
No_of_seqs    7 out of 9
Neff          1.9 
Searched_HMMs 39220
Date          Wed May 25 16:22:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_237.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam05297 Herpes_LMP1 Herpesvi  78.9     5.2 0.00013   20.1   5.5   42    2-43    144-189 (382)
  2 pfam05814 DUF843 Baculovirus p  56.7      17 0.00043   17.6   5.2   30    1-30      1-31  (83)
  3 pfam06129 Chordopox_G3 Chordop  53.4     9.5 0.00024   18.8   2.1   28   22-49      3-30  (109)
  4 PRK05886 yajC preprotein trans  39.1      21 0.00053   17.1   2.0   21    1-21      6-26  (108)
  5 pfam11395 DUF2873 Protein of u  31.7      45  0.0011   15.4   3.2   23   22-44     14-36  (43)
  6 COG3548 Predicted integral mem  30.0      34 0.00086   16.0   1.8   13   31-43     61-73  (197)
  7 KOG2678 consensus               29.3      49  0.0013   15.2   3.1   24   17-40    209-232 (244)
  8 PRK00442 tatA twin arginine tr  20.6      74  0.0019   14.3   2.6   17   23-39      5-21  (90)
  9 COG4984 Predicted membrane pro  19.5      79   0.002   14.2   2.9   17    2-18    260-276 (644)
 10 pfam10831 DUF2556 Protein of u  18.5      80   0.002   14.2   1.9   15   26-40      6-20  (53)

No 1  
>pfam05297 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys.
Probab=78.93  E-value=5.2  Score=20.10  Aligned_cols=42  Identities=29%  Similarity=0.603  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4679999999999984103----47999999999999999988632
Q 537021.9.peg.2    2 FLPFLIAFLVSISLILKQR----KISYILLLILFIITILLFKYHAT   43 (50)
Q Consensus         2 FlPFLiAl~~~~~~i~~k~----klsY~Lw~iL~iitil~Fk~Hat   43 (50)
                      ||.|+.|....+-+.+-++    -+.-.+|++||.-++.|.-+|..
T Consensus       144 ~LAFlLAIilLIIAv~LhqaW~T~LvDL~WLlLFLaILIW~Y~Hgp  189 (382)
T pfam05297       144 FLAFFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWMYYHGP  189 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999999999999999999999999999999751277


No 2  
>pfam05814 DUF843 Baculovirus protein of unknown function (DUF843). This family consists of several Baculovirus proteins of around 85 residues long with no known function.
Probab=56.70  E-value=17  Score=17.55  Aligned_cols=30  Identities=27%  Similarity=0.547  Sum_probs=21.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf             946799999999999841034-799999999
Q 537021.9.peg.2    1 MFLPFLIAFLVSISLILKQRK-ISYILLLIL   30 (50)
Q Consensus         1 MFlPFLiAl~~~~~~i~~k~k-lsY~Lw~iL   30 (50)
                      |++.+++.-.++.+.++.|.. -|-.+..+|
T Consensus         1 M~~y~~~~~Liv~~fi~dk~e~~s~li~~~l   31 (83)
T pfam05814         1 MLIYFLFIALIVLAFIFDKNEGSSELILTLL   31 (83)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             9089999999999999704566278999999


No 3  
>pfam06129 Chordopox_G3 Chordopoxvirus G3 protein. This family consists of several Chordopoxvirus specific G3 proteins. The function of this family is unknown.
Probab=53.37  E-value=9.5  Score=18.78  Aligned_cols=28  Identities=36%  Similarity=0.820  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             7999999999999999988632220024
Q 537021.9.peg.2   22 ISYILLLILFIITILLFKYHATNNINLS   49 (50)
Q Consensus        22 lsY~Lw~iL~iitil~Fk~Hat~~lnLS   49 (50)
                      +-|.+.+++|++...-|+|+-||-+.++
T Consensus         3 ll~l~fFi~Fl~l~Y~~n~~PTNKlqla   30 (109)
T pfam06129         3 LLYLLFFILFLLLCYFFNYYPTNKLQLA   30 (109)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             5289999999999998630467158875


No 4  
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=39.12  E-value=21  Score=17.07  Aligned_cols=21  Identities=24%  Similarity=0.534  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             946799999999999841034
Q 537021.9.peg.2    1 MFLPFLIAFLVSISLILKQRK   21 (50)
Q Consensus         1 MFlPFLiAl~~~~~~i~~k~k   21 (50)
                      +|+|+++-|++-.=.+.+++|
T Consensus         6 ~flPlili~~vf~f~~iRpQk   26 (108)
T PRK05886          6 LFLPFLLIMGGFMYFASRRQR   26 (108)
T ss_pred             HHHHHHHHHHHHHHHHCCHHH
T ss_conf             999999999999999316899


No 5  
>pfam11395 DUF2873 Protein of unknown function (DUF2873). This viral family of proteins has no known function.
Probab=31.69  E-value=45  Score=15.41  Aligned_cols=23  Identities=22%  Similarity=0.707  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             79999999999999999886322
Q 537021.9.peg.2   22 ISYILLLILFIITILLFKYHATN   44 (50)
Q Consensus        22 lsY~Lw~iL~iitil~Fk~Hat~   44 (50)
                      +.+.|.++|....+|||.-...|
T Consensus        14 lafllflvlimliifwfsleiqd   36 (43)
T pfam11395        14 LAFLLFLVLIMLIIFWFSLEIQD   36 (43)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999862302


No 6  
>COG3548 Predicted integral membrane protein [Function unknown]
Probab=30.01  E-value=34  Score=16.04  Aligned_cols=13  Identities=23%  Similarity=0.628  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999988632
Q 537021.9.peg.2   31 FIITILLFKYHAT   43 (50)
Q Consensus        31 ~iitil~Fk~Hat   43 (50)
                      ++++++||+||..
T Consensus        61 ~~v~~~W~n~h~~   73 (197)
T COG3548          61 LVVAIFWFNHHRI   73 (197)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 7  
>KOG2678 consensus
Probab=29.32  E-value=49  Score=15.20  Aligned_cols=24  Identities=29%  Similarity=0.532  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             410347999999999999999988
Q 537021.9.peg.2   17 LKQRKISYILLLILFIITILLFKY   40 (50)
Q Consensus        17 ~~k~klsY~Lw~iL~iitil~Fk~   40 (50)
                      +.|+|.+|-+...++|+.++.|.-
T Consensus       209 y~ksk~s~wf~~~miI~v~~sFVs  232 (244)
T KOG2678         209 YDKSKLSYWFYITMIIFVILSFVS  232 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             878633679999999999999999


No 8  
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=20.63  E-value=74  Score=14.31  Aligned_cols=17  Identities=12%  Similarity=0.620  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999998
Q 537021.9.peg.2   23 SYILLLILFIITILLFK   39 (50)
Q Consensus        23 sY~Lw~iL~iitil~Fk   39 (50)
                      |..-|+|.++|.++.|-
T Consensus         5 s~~hwlivl~iv~llFG   21 (90)
T PRK00442          5 DWKHWIVILVVVVLVFG   21 (90)
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             69999999999999946


No 9  
>COG4984 Predicted membrane protein [Function unknown]
Probab=19.49  E-value=79  Score=14.17  Aligned_cols=17  Identities=47%  Similarity=0.595  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             46799999999999841
Q 537021.9.peg.2    2 FLPFLIAFLVSISLILK   18 (50)
Q Consensus         2 FlPFLiAl~~~~~~i~~   18 (50)
                      ++-+++++++++++|.|
T Consensus       260 ~~~~Ll~~l~~ig~iag  276 (644)
T COG4984         260 FLVTLLAFLGTIGAIAG  276 (644)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999998747


No 10 
>pfam10831 DUF2556 Protein of unknown function (DUF2556). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=18.54  E-value=80  Score=14.15  Aligned_cols=15  Identities=27%  Similarity=0.727  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999988
Q 537021.9.peg.2   26 LLLILFIITILLFKY   40 (50)
Q Consensus        26 Lw~iL~iitil~Fk~   40 (50)
                      -|++.|-+++|.|.-
T Consensus         6 wwlvvfav~vflfda   20 (53)
T pfam10831         6 WWLVVFAVSVFLFDA   20 (53)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             358999999999999


Done!