RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.237_1 (50 letters) >gnl|CDD|144140 pfam00434, VP7, Glycoprotein VP7. Length = 326 Score = 26.7 bits (59), Expect = 1.6 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 2 FLPFLIAF-LVSISLILKQRKISYILLLILFIITILLFKYHATN-NINL 48 L FLI+ L++ L R + YI+ L +I +L A N INL Sbjct: 9 ILTFLISIILLNYILKTITRIMDYIIYRFLLVIVVLSPFSSAQNYGINL 57 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.344 0.156 0.433 Gapped Lambda K H 0.267 0.0736 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 569,933 Number of extensions: 23081 Number of successful extensions: 620 Number of sequences better than 10.0: 1 Number of HSP's gapped: 605 Number of HSP's successfully gapped: 107 Length of query: 50 Length of database: 6,263,737 Length adjustment: 23 Effective length of query: 27 Effective length of database: 5,766,730 Effective search space: 155701710 Effective search space used: 155701710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.5 bits) S2: 51 (23.4 bits)