RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.237_1
         (50 letters)



>gnl|CDD|185090 PRK15136, PRK15136, multidrug efflux system protein EmrA;
          Provisional.
          Length = 390

 Score = 25.0 bits (55), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 18 KQRKISYILLLILFII 33
           +RK + +LL +LFII
Sbjct: 18 GKRKRALLLLTLLFII 33


>gnl|CDD|184397 PRK13922, PRK13922, rod shape-determining protein MreC;
          Provisional.
          Length = 276

 Score = 23.8 bits (52), Expect = 9.6
 Identities = 5/35 (14%), Positives = 19/35 (54%)

Query: 2  FLPFLIAFLVSISLILKQRKISYILLLILFIITIL 36
           L  ++  L++++L+L  R++  +  +   +  ++
Sbjct: 13 LLLLILLLLLALALLLADRRLGSLSPVRQVVGDVV 47


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.344    0.156    0.433 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 755,012
Number of extensions: 33819
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 127
Length of query: 50
Length of database: 5,994,473
Length adjustment: 23
Effective length of query: 27
Effective length of database: 5,497,489
Effective search space: 148432203
Effective search space used: 148432203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 50 (23.0 bits)