RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.237_1
         (50 letters)



>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein,
           rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A
           {Rhodobacter capsulatus}
          Length = 258

 Score = 24.7 bits (53), Expect = 6.0
 Identities = 5/35 (14%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 6   LIAFLVSIS--LILKQRKISYILLLILFIITILLF 38
           + AFL+  +   ++ ++++  + +++L +++++L+
Sbjct: 209 VSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLY 243


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.344    0.156    0.433 

Gapped
Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 351,394
Number of extensions: 9759
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 6
Length of query: 50
Length of database: 5,693,230
Length adjustment: 22
Effective length of query: 28
Effective length of database: 5,159,862
Effective search space: 144476136
Effective search space used: 144476136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 50 (23.7 bits)