RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.237_1 (50 letters) >1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus} Length = 258 Score = 24.7 bits (53), Expect = 6.0 Identities = 5/35 (14%), Positives = 24/35 (68%), Gaps = 2/35 (5%) Query: 6 LIAFLVSIS--LILKQRKISYILLLILFIITILLF 38 + AFL+ + ++ ++++ + +++L +++++L+ Sbjct: 209 VSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLY 243 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.344 0.156 0.433 Gapped Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 351,394 Number of extensions: 9759 Number of successful extensions: 109 Number of sequences better than 10.0: 1 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 6 Length of query: 50 Length of database: 5,693,230 Length adjustment: 22 Effective length of query: 28 Effective length of database: 5,159,862 Effective search space: 144476136 Effective search space used: 144476136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.5 bits) S2: 50 (23.7 bits)