Query 537021.9.peg.248_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 16:18:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_248.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1iow_A DD-ligase, DDLB, D-ALA 11.4 1.3E+02 0.0037 14.5 1.7 20 22-41 20-39 (74) 2 >1f3k_A Omega-conotoxin txvii; 7.2 1.1E+02 0.0032 14.8 -0.0 19 26-44 8-26 (26) 3 >1avo_A 11S regulator; proteas 7.0 1.5E+02 0.0045 14.1 0.6 25 6-30 20-45 (60) 4 >2p5m_A Arginine repressor; al 7.0 1.9E+02 0.0058 13.5 1.2 21 21-41 39-59 (83) 5 >1e4e_A Vancomycin/teicoplanin 6.2 2.5E+02 0.0073 13.0 1.4 18 24-41 13-30 (64) 6 >2crl_A Copper chaperone for s 5.0 1.5E+02 0.0043 14.2 -0.4 8 35-42 25-32 (98) 7 >1fvi_A Chlorella virus DNA li 5.0 3E+02 0.0087 12.6 1.2 10 26-35 14-23 (78) 8 >3ere_D Arginine repressor; X- 4.9 3.1E+02 0.0093 12.5 1.5 19 22-40 40-58 (83) 9 >1a9x_A Carbamoyl phosphate sy 4.8 3.2E+02 0.0094 12.5 1.2 18 24-41 15-32 (68) 10 >1cc8_A Protein (metallochaper 4.6 1.6E+02 0.0048 13.9 -0.4 8 35-42 11-18 (73) No 1 >>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} (A:111-184) Probab=11.38 E-value=1.3e+02 Score=14.49 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=15.3 Q ss_pred HHHHHHHCCCCEEEEECCCE Q ss_conf 76565312663211202221 Q 537021.9.peg.2 22 VGNFLDSLSFPCFIGISCGA 41 (45) Q Consensus 22 vgnfldslsfpcfigiscga 41 (45) .-.+.+.++|||+|--.+|+ T Consensus 20 ~~~~~~~~g~PvviKP~~~~ 39 (74) T 1iow_A 20 QLAEISALGLPVIVKPSREG 39 (74) T ss_dssp HHHHHHTTCSSEEEEETTCC T ss_pred HHHHHHHCCCCEEEEECCCC T ss_conf 89988603998899828988 No 2 >>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} (A:) Probab=7.20 E-value=1.1e+02 Score=14.84 Aligned_cols=19 Identities=37% Similarity=0.899 Sum_probs=14.8 Q ss_pred HHHCCCCEEEEECCCEEEE Q ss_conf 5312663211202221341 Q 537021.9.peg.2 26 LDSLSFPCFIGISCGACIF 44 (45) Q Consensus 26 ldslsfpcfigiscgacif 44 (45) -|..|..|-.||--|.|.+ T Consensus 8 cdvfsldcctgiclgvcmw 26 (26) T 1f3k_A 8 CDVFSLDCCTGICLGVCMW 26 (26) T ss_dssp CCSSSCCSTTSCCSSSCCC T ss_pred CCEEEEECCCCEEEEEEEC T ss_conf 4677770334237778729 No 3 >>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} (A:) Probab=6.99 E-value=1.5e+02 Score=14.09 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=18.3 Q ss_pred ECCCCHHHHHHHHHHH-HHHHHHHCC Q ss_conf 1012135566778876-765653126 Q 537021.9.peg.2 6 LQAGSLVATGFLEKIF-VGNFLDSLS 30 (45) Q Consensus 6 lqagslvatgflekif-vgnfldsls 30 (45) -+|-.||.++|-+||- ..++|.+-+ T Consensus 20 ~eAE~Lv~~~fP~KI~eLd~LLk~~~ 45 (60) T 1avo_A 20 TKTENLLGSYFPKKISELDAFLKEPA 45 (60) T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999554399999999867654 No 4 >>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} (A:) Probab=6.96 E-value=1.9e+02 Score=13.53 Aligned_cols=21 Identities=29% Similarity=0.762 Sum_probs=17.9 Q ss_pred HHHHHHHHCCCCEEEEECCCE Q ss_conf 676565312663211202221 Q 537021.9.peg.2 21 FVGNFLDSLSFPCFIGISCGA 41 (45) Q Consensus 21 fvgnfldslsfpcfigiscga 41 (45) .+++.+|.+.+|...|.-+|. T Consensus 39 ~va~~iD~~~~~~i~GTIAGd 59 (83) T 2p5m_A 39 AIGALMDNLDWDEMMGTICGD 59 (83) T ss_dssp HHHHHHHTTTCTTCCEEEECS T ss_pred HHHHHHHCCCCCCEEEEECCC T ss_conf 999999718999808997049 No 5 >>1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} (A:147-210) Probab=6.25 E-value=2.5e+02 Score=13.01 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=13.7 Q ss_pred HHHHHCCCCEEEEECCCE Q ss_conf 565312663211202221 Q 537021.9.peg.2 24 NFLDSLSFPCFIGISCGA 41 (45) Q Consensus 24 nfldslsfpcfigiscga 41 (45) .+.+.+.|||++--++|. T Consensus 13 ~~~~~lgyPvivKP~~~~ 30 (64) T 1e4e_A 13 PVAATFTYPVFVKPARSG 30 (64) T ss_dssp CCGGGSCSCEEEEESSCC T ss_pred HHHHHHCCCEEEEECCCC T ss_conf 999860996899537889 No 6 >>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=4.98 E-value=1.5e+02 Score=14.16 Aligned_cols=8 Identities=25% Similarity=1.215 Sum_probs=0.0 Q ss_pred EEECCCEE Q ss_conf 12022213 Q 537021.9.peg.2 35 IGISCGAC 42 (45) Q Consensus 35 igiscgac 42 (45) +|++|+.| T Consensus 25 vgM~C~~C 32 (98) T 2crl_A 25 VQMTCQSC 32 (98) T ss_dssp ECCCSHHH T ss_pred ECCCCHHH T ss_conf 83298899 No 7 >>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} (A:1-27,A:138-188) Probab=4.98 E-value=3e+02 Score=12.61 Aligned_cols=10 Identities=30% Similarity=1.175 Sum_probs=0.0 Q ss_pred HHHCCCCEEE Q ss_conf 5312663211 Q 537021.9.peg.2 26 LDSLSFPCFI 35 (45) Q Consensus 26 ldslsfpcfi 35 (45) .|...||||. T Consensus 14 ~~~~~~~~~~ 23 (78) T 1fvi_A 14 IEDVQFPCLA 23 (78) T ss_dssp GGGCCSSEEE T ss_pred HHHCCCEEEE T ss_conf 4553963899 No 8 >>3ere_D Arginine repressor; X-RAY crystallography, arginine repressor protein; 2.50A {Mycobacterium tuberculosis H37RV} PDB: 3fhz_A* (D:88-170) Probab=4.87 E-value=3.1e+02 Score=12.48 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=0.0 Q ss_pred HHHHHHHCCCCEEEEECCC Q ss_conf 7656531266321120222 Q 537021.9.peg.2 22 VGNFLDSLSFPCFIGISCG 40 (45) Q Consensus 22 vgnfldslsfpcfigiscg 40 (45) |+..+|.+.+|-.+|.-+| T Consensus 40 va~~ID~~~~~~I~GtIAG 58 (83) T 3ere_D 40 LASAIDRAALPQVVGTIAG 58 (83) T ss_dssp HHHHHHHTTCTTEEEEEEC T ss_pred HHHHHHHCCCCCCEEEEEC T ss_conf 9999961798871899611 No 9 >>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:689-756) Probab=4.78 E-value=3.2e+02 Score=12.45 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=0.0 Q ss_pred HHHHHCCCCEEEEECCCE Q ss_conf 565312663211202221 Q 537021.9.peg.2 24 NFLDSLSFPCFIGISCGA 41 (45) Q Consensus 24 nfldslsfpcfigiscga 41 (45) .+.+.+.|||.|--+.|+ T Consensus 15 ~~~~~~g~PvviKp~~~~ 32 (68) T 1a9x_A 15 EKAKEIGYPLVVRASYVL 32 (68) T ss_dssp HHHHHHCSSEEEEC---- T ss_pred HHHHHCCCCEEEECCCCC T ss_conf 999865976685212345 No 10 >>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination; 1.02A {Saccharomyces cerevisiae} (A:) Probab=4.61 E-value=1.6e+02 Score=13.94 Aligned_cols=8 Identities=25% Similarity=1.153 Sum_probs=0.0 Q ss_pred EEECCCEE Q ss_conf 12022213 Q 537021.9.peg.2 35 IGISCGAC 42 (45) Q Consensus 35 igiscgac 42 (45) +|++|+.| T Consensus 11 vgM~C~~C 18 (73) T 1cc8_A 11 VVMTCSGC 18 (73) T ss_dssp ECCCSHHH T ss_pred ECCCCHHH T ss_conf 83093898 Done!