Query         537021.9.peg.248_1
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 16:18:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_248.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1iow_A DD-ligase, DDLB, D-ALA  11.4 1.3E+02  0.0037   14.5   1.7   20   22-41     20-39  (74)
  2 >1f3k_A Omega-conotoxin txvii;   7.2 1.1E+02  0.0032   14.8  -0.0   19   26-44      8-26  (26)
  3 >1avo_A 11S regulator; proteas   7.0 1.5E+02  0.0045   14.1   0.6   25    6-30     20-45  (60)
  4 >2p5m_A Arginine repressor; al   7.0 1.9E+02  0.0058   13.5   1.2   21   21-41     39-59  (83)
  5 >1e4e_A Vancomycin/teicoplanin   6.2 2.5E+02  0.0073   13.0   1.4   18   24-41     13-30  (64)
  6 >2crl_A Copper chaperone for s   5.0 1.5E+02  0.0043   14.2  -0.4    8   35-42     25-32  (98)
  7 >1fvi_A Chlorella virus DNA li   5.0   3E+02  0.0087   12.6   1.2   10   26-35     14-23  (78)
  8 >3ere_D Arginine repressor; X-   4.9 3.1E+02  0.0093   12.5   1.5   19   22-40     40-58  (83)
  9 >1a9x_A Carbamoyl phosphate sy   4.8 3.2E+02  0.0094   12.5   1.2   18   24-41     15-32  (68)
 10 >1cc8_A Protein (metallochaper   4.6 1.6E+02  0.0048   13.9  -0.4    8   35-42     11-18  (73)

No 1  
>>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} (A:111-184)
Probab=11.38  E-value=1.3e+02  Score=14.49  Aligned_cols=20  Identities=15%  Similarity=0.142  Sum_probs=15.3

Q ss_pred             HHHHHHHCCCCEEEEECCCE
Q ss_conf             76565312663211202221
Q 537021.9.peg.2   22 VGNFLDSLSFPCFIGISCGA   41 (45)
Q Consensus        22 vgnfldslsfpcfigiscga   41 (45)
                      .-.+.+.++|||+|--.+|+
T Consensus        20 ~~~~~~~~g~PvviKP~~~~   39 (74)
T 1iow_A           20 QLAEISALGLPVIVKPSREG   39 (74)
T ss_dssp             HHHHHHTTCSSEEEEETTCC
T ss_pred             HHHHHHHCCCCEEEEECCCC
T ss_conf             89988603998899828988


No 2  
>>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} (A:)
Probab=7.20  E-value=1.1e+02  Score=14.84  Aligned_cols=19  Identities=37%  Similarity=0.899  Sum_probs=14.8

Q ss_pred             HHHCCCCEEEEECCCEEEE
Q ss_conf             5312663211202221341
Q 537021.9.peg.2   26 LDSLSFPCFIGISCGACIF   44 (45)
Q Consensus        26 ldslsfpcfigiscgacif   44 (45)
                      -|..|..|-.||--|.|.+
T Consensus         8 cdvfsldcctgiclgvcmw   26 (26)
T 1f3k_A            8 CDVFSLDCCTGICLGVCMW   26 (26)
T ss_dssp             CCSSSCCSTTSCCSSSCCC
T ss_pred             CCEEEEECCCCEEEEEEEC
T ss_conf             4677770334237778729


No 3  
>>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} (A:)
Probab=6.99  E-value=1.5e+02  Score=14.09  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=18.3

Q ss_pred             ECCCCHHHHHHHHHHH-HHHHHHHCC
Q ss_conf             1012135566778876-765653126
Q 537021.9.peg.2    6 LQAGSLVATGFLEKIF-VGNFLDSLS   30 (45)
Q Consensus         6 lqagslvatgflekif-vgnfldsls   30 (45)
                      -+|-.||.++|-+||- ..++|.+-+
T Consensus        20 ~eAE~Lv~~~fP~KI~eLd~LLk~~~   45 (60)
T 1avo_A           20 TKTENLLGSYFPKKISELDAFLKEPA   45 (60)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999554399999999867654


No 4  
>>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} (A:)
Probab=6.96  E-value=1.9e+02  Score=13.53  Aligned_cols=21  Identities=29%  Similarity=0.762  Sum_probs=17.9

Q ss_pred             HHHHHHHHCCCCEEEEECCCE
Q ss_conf             676565312663211202221
Q 537021.9.peg.2   21 FVGNFLDSLSFPCFIGISCGA   41 (45)
Q Consensus        21 fvgnfldslsfpcfigiscga   41 (45)
                      .+++.+|.+.+|...|.-+|.
T Consensus        39 ~va~~iD~~~~~~i~GTIAGd   59 (83)
T 2p5m_A           39 AIGALMDNLDWDEMMGTICGD   59 (83)
T ss_dssp             HHHHHHHTTTCTTCCEEEECS
T ss_pred             HHHHHHHCCCCCCEEEEECCC
T ss_conf             999999718999808997049


No 5  
>>1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} (A:147-210)
Probab=6.25  E-value=2.5e+02  Score=13.01  Aligned_cols=18  Identities=11%  Similarity=0.401  Sum_probs=13.7

Q ss_pred             HHHHHCCCCEEEEECCCE
Q ss_conf             565312663211202221
Q 537021.9.peg.2   24 NFLDSLSFPCFIGISCGA   41 (45)
Q Consensus        24 nfldslsfpcfigiscga   41 (45)
                      .+.+.+.|||++--++|.
T Consensus        13 ~~~~~lgyPvivKP~~~~   30 (64)
T 1e4e_A           13 PVAATFTYPVFVKPARSG   30 (64)
T ss_dssp             CCGGGSCSCEEEEESSCC
T ss_pred             HHHHHHCCCEEEEECCCC
T ss_conf             999860996899537889


No 6  
>>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=4.98  E-value=1.5e+02  Score=14.16  Aligned_cols=8  Identities=25%  Similarity=1.215  Sum_probs=0.0

Q ss_pred             EEECCCEE
Q ss_conf             12022213
Q 537021.9.peg.2   35 IGISCGAC   42 (45)
Q Consensus        35 igiscgac   42 (45)
                      +|++|+.|
T Consensus        25 vgM~C~~C   32 (98)
T 2crl_A           25 VQMTCQSC   32 (98)
T ss_dssp             ECCCSHHH
T ss_pred             ECCCCHHH
T ss_conf             83298899


No 7  
>>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} (A:1-27,A:138-188)
Probab=4.98  E-value=3e+02  Score=12.61  Aligned_cols=10  Identities=30%  Similarity=1.175  Sum_probs=0.0

Q ss_pred             HHHCCCCEEE
Q ss_conf             5312663211
Q 537021.9.peg.2   26 LDSLSFPCFI   35 (45)
Q Consensus        26 ldslsfpcfi   35 (45)
                      .|...||||.
T Consensus        14 ~~~~~~~~~~   23 (78)
T 1fvi_A           14 IEDVQFPCLA   23 (78)
T ss_dssp             GGGCCSSEEE
T ss_pred             HHHCCCEEEE
T ss_conf             4553963899


No 8  
>>3ere_D Arginine repressor; X-RAY crystallography, arginine repressor protein; 2.50A {Mycobacterium tuberculosis H37RV} PDB: 3fhz_A* (D:88-170)
Probab=4.87  E-value=3.1e+02  Score=12.48  Aligned_cols=19  Identities=21%  Similarity=0.524  Sum_probs=0.0

Q ss_pred             HHHHHHHCCCCEEEEECCC
Q ss_conf             7656531266321120222
Q 537021.9.peg.2   22 VGNFLDSLSFPCFIGISCG   40 (45)
Q Consensus        22 vgnfldslsfpcfigiscg   40 (45)
                      |+..+|.+.+|-.+|.-+|
T Consensus        40 va~~ID~~~~~~I~GtIAG   58 (83)
T 3ere_D           40 LASAIDRAALPQVVGTIAG   58 (83)
T ss_dssp             HHHHHHHTTCTTEEEEEEC
T ss_pred             HHHHHHHCCCCCCEEEEEC
T ss_conf             9999961798871899611


No 9  
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:689-756)
Probab=4.78  E-value=3.2e+02  Score=12.45  Aligned_cols=18  Identities=11%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             HHHHHCCCCEEEEECCCE
Q ss_conf             565312663211202221
Q 537021.9.peg.2   24 NFLDSLSFPCFIGISCGA   41 (45)
Q Consensus        24 nfldslsfpcfigiscga   41 (45)
                      .+.+.+.|||.|--+.|+
T Consensus        15 ~~~~~~g~PvviKp~~~~   32 (68)
T 1a9x_A           15 EKAKEIGYPLVVRASYVL   32 (68)
T ss_dssp             HHHHHHCSSEEEEC----
T ss_pred             HHHHHCCCCEEEECCCCC
T ss_conf             999865976685212345


No 10 
>>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination; 1.02A {Saccharomyces cerevisiae} (A:)
Probab=4.61  E-value=1.6e+02  Score=13.94  Aligned_cols=8  Identities=25%  Similarity=1.153  Sum_probs=0.0

Q ss_pred             EEECCCEE
Q ss_conf             12022213
Q 537021.9.peg.2   35 IGISCGAC   42 (45)
Q Consensus        35 igiscgac   42 (45)
                      +|++|+.|
T Consensus        11 vgM~C~~C   18 (73)
T 1cc8_A           11 VVMTCSGC   18 (73)
T ss_dssp             ECCCSHHH
T ss_pred             ECCCCHHH
T ss_conf             83093898


Done!