RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.248_1 (45 letters) >gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. Length = 404 Score = 25.7 bits (57), Expect = 2.9 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 6 LQAGSLVATGFLEKIFVGNFLDSLSFPCFIGISCGACI 43 L GS V T +LE + +L+ L F +G C CI Sbjct: 309 LAPGSRVVTKYLEASGLLPYLEKLGFH-VVGYGCTTCI 345 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.337 0.152 0.487 Gapped Lambda K H 0.267 0.0594 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 543,125 Number of extensions: 17687 Number of successful extensions: 73 Number of sequences better than 10.0: 1 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 3 Length of query: 45 Length of database: 6,263,737 Length adjustment: 18 Effective length of query: 27 Effective length of database: 5,874,775 Effective search space: 158618925 Effective search space used: 158618925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 51 (23.7 bits)