RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.248_1
         (45 letters)



>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
           {Bacillus cereus [TaxId: 1396]}
          Length = 244

 Score = 22.8 bits (49), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 5   FLQAGSLVATGFLEKIFVGN 24
            +QA  L ATG ++ + +GN
Sbjct: 208 EVQAKHLWATGLIDDVIIGN 227


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.337    0.152    0.487 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 162,300
Number of extensions: 4307
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 45
Length of database: 2,407,596
Length adjustment: 17
Effective length of query: 28
Effective length of database: 2,174,186
Effective search space: 60877208
Effective search space used: 60877208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.0 bits)