BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.248_1
         (45 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.248_1 
          Length = 45

 Score = 87.0 bits (214), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  LSINFLQAGSLVATGFLEKIFVGNFLDSLSFPCFIGISCGACIFF 45
          LSINFLQAGSLVATGFLEKIFVGNFLDSLSFPCFIGISCGACIFF
Sbjct: 1  LSINFLQAGSLVATGFLEKIFVGNFLDSLSFPCFIGISCGACIFF 45


>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 692

 Score = 23.9 bits (50), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 9   GSLVATGFLEKIFVGNFLDSLSFPCFIGISCGACIFF 45
           G L  TG L  + +GN  D + +      S G C+ F
Sbjct: 584 GDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDF 620


>gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 494

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 8   AGSLVATGFLEK 19
           AGS+VA  FLEK
Sbjct: 436 AGSIVAAQFLEK 447


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.337    0.152    0.487 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,684
Number of Sequences: 1233
Number of extensions: 712
Number of successful extensions: 5
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 45
length of database: 328,796
effective HSP length: 18
effective length of query: 27
effective length of database: 306,602
effective search space:  8278254
effective search space used:  8278254
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 31 (16.5 bits)