Query         537021.9.peg.254_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 16:00:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_254.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2jne_A Hypothetical protein Y  22.6      31  0.0009   17.5   0.8   18    8-33     81-99  (101)
  2 >2jrp_A Putative cytoplasmic p  22.0      25 0.00073   18.0   0.3   10   24-33     30-39  (51)
  3 >2fb7_A SM-like protein, LSM-1   8.0 1.9E+02  0.0055   13.8   1.5   16   19-34     18-34  (95)
  4 >2vxe_A CG10686-PA; EDC3, CAR-   7.6   2E+02  0.0059   13.6   1.5   11   23-33     17-27  (88)
  5 >1tt9_A Formimidoyltransferase   5.5 2.1E+02  0.0063   13.5   0.8   11    1-11    121-131 (180)
  6 >1f2l_A Fractalkine; chemoattr   5.4 2.9E+02  0.0087   12.8   3.1   34    1-34     19-52  (76)
  7 >3ke8_A 4-hydroxy-3-methylbut-   4.6 1.5E+02  0.0044   14.3  -0.6   23    2-24     22-47  (86)
  8 >1nyp_A Pinch protein; LIM dom   4.2 3.4E+02    0.01   12.5   1.0   14   10-23      4-17  (29)
  9 >1a0i_A DNA ligase; DNA replic   3.6   4E+02   0.012   12.2   1.0   28   10-37     85-116 (158)
 10 >2kie_A Inositol polyphosphate   3.4 4.1E+02   0.012   12.1   0.8    7   28-34     65-71  (124)

No 1  
>>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=22.61  E-value=31  Score=17.55  Aligned_cols=18  Identities=50%  Similarity=0.866  Sum_probs=12.0

Q ss_pred             EEEECC-CCCCCCCEEEEEECCEEEEE
Q ss_conf             076348-87312334667733527898
Q 537021.9.peg.2    8 GYFHNE-NGYEKKGIKFLISKSRIRCV   33 (38)
Q Consensus         8 gyfhne-ngyekkgikflisksrircv   33 (38)
                      .||-|. ||        ||||||++-+
T Consensus        81 dYFCq~chg--------LiSKkRV~F~   99 (101)
T 2jne_A           81 DYFCQHGHG--------LISKKRVEFV   99 (101)
T ss_dssp             EEEETTTTE--------EECTTTSEEE
T ss_pred             HHHHCCCCC--------EEEEEEEEEE
T ss_conf             354457985--------2470159998


No 2  
>>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:31-81)
Probab=22.02  E-value=25  Score=17.99  Aligned_cols=10  Identities=60%  Similarity=0.806  Sum_probs=7.8

Q ss_pred             EEECCEEEEE
Q ss_conf             7733527898
Q 537021.9.peg.2   24 LISKSRIRCV   33 (38)
Q Consensus        24 lisksrircv   33 (38)
                      ||||||++-.
T Consensus        30 LiSK~rV~f~   39 (51)
T 2jrp_A           30 LISKKRVNFV   39 (51)
T ss_dssp             CCCTTSSEEE
T ss_pred             EEEEEEEEEE
T ss_conf             2571069999


No 3  
>>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} (A:)
Probab=8.01  E-value=1.9e+02  Score=13.78  Aligned_cols=16  Identities=50%  Similarity=0.486  Sum_probs=10.6

Q ss_pred             CCEE-EEEECCEEEEEE
Q ss_conf             3346-677335278986
Q 537021.9.peg.2   19 KGIK-FLISKSRIRCVQ   34 (38)
Q Consensus        19 kgik-flisksrircvq   34 (38)
                      -|.+ -||||+.||-+-
T Consensus        18 IG~~ISLISk~dIRYeG   34 (95)
T 2fb7_A           18 IGSKISLISKAEIRYEG   34 (95)
T ss_dssp             SSEEEEEEETTTEEEEE
T ss_pred             CCCEEEEEECCCCEEEE
T ss_conf             58869998768846899


No 4  
>>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster} (A:)
Probab=7.61  E-value=2e+02  Score=13.64  Aligned_cols=11  Identities=55%  Similarity=0.537  Sum_probs=8.4

Q ss_pred             EEEECCEEEEE
Q ss_conf             67733527898
Q 537021.9.peg.2   23 FLISKSRIRCV   33 (38)
Q Consensus        23 flisksrircv   33 (38)
                      -||||+.||-+
T Consensus        17 sLISk~dIRYe   27 (88)
T 2vxe_A           17 SLISKADIRYE   27 (88)
T ss_dssp             EEEETTTEEEE
T ss_pred             EEEECCCCEEE
T ss_conf             99876883789


No 5  
>>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A (A:1-180)
Probab=5.54  E-value=2.1e+02  Score=13.49  Aligned_cols=11  Identities=45%  Similarity=0.942  Sum_probs=7.7

Q ss_pred             CCEEEEEEEEE
Q ss_conf             96057700763
Q 537021.9.peg.2    1 VPCYFYGGYFH   11 (38)
Q Consensus         1 vpcyfyggyfh   11 (38)
                      ||.|+||---.
T Consensus       121 vPVyLYg~Aa~  131 (180)
T 1tt9_A          121 VPVYLYGEAAQ  131 (180)
T ss_pred             CCEEEEHHHCC
T ss_conf             86686233038


No 6  
>>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo sapiens} (A:)
Probab=5.42  E-value=2.9e+02  Score=12.81  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             CCEEEEEEEEECCCCCCCCCEEEEEECCEEEEEE
Q ss_conf             9605770076348873123346677335278986
Q 537021.9.peg.2    1 VPCYFYGGYFHNENGYEKKGIKFLISKSRIRCVQ   34 (38)
Q Consensus         1 vpcyfyggyfhnengyekkgikflisksrircvq   34 (38)
                      +|.-+.-+|.....+-.+.+|-|..-+.+.-|+.
T Consensus        19 Ip~~~I~~y~~~~~~C~~~aVIf~tk~g~~iC~d   52 (76)
T 1f2l_A           19 IPVALLIHYQQNQASCGKRAIILETRQHRLFCAD   52 (76)
T ss_dssp             CCGGGEEEEEECCGGGSSCCEEEEETTCCEEEEC
T ss_pred             CCHHHCEEEEECCCCCCCCEEEEEECCCCEEECC
T ss_conf             9936822889889999987699997689978279


No 7  
>>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A (A:21-106)
Probab=4.61  E-value=1.5e+02  Score=14.26  Aligned_cols=23  Identities=26%  Similarity=0.580  Sum_probs=0.0

Q ss_pred             CEEEEEEEEECC---CCCCCCCEEEE
Q ss_conf             605770076348---87312334667
Q 537021.9.peg.2    2 PCYFYGGYFHNE---NGYEKKGIKFL   24 (38)
Q Consensus         2 pcyfyggyfhne---ngyekkgikfl   24 (38)
                      |.|-+|---||.   +-.+++|++++
T Consensus        22 ~i~tlG~lIHN~~vv~~L~~~Gv~~v   47 (86)
T 3ke8_A           22 PIYVRHEVVHNRYVVDSLRERGAIFI   47 (86)
T ss_dssp             CEEEESCSSSCHHHHHHHHHHTEEEE
T ss_pred             CEEECCCCCCCHHHHHHHHHCCCEEE
T ss_conf             78767746649899999998889993


No 8  
>>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} (A:38-66)
Probab=4.16  E-value=3.4e+02  Score=12.52  Aligned_cols=14  Identities=36%  Similarity=0.861  Sum_probs=0.0

Q ss_pred             EECCCCCCCCCEEE
Q ss_conf             63488731233466
Q 537021.9.peg.2   10 FHNENGYEKKGIKF   23 (38)
Q Consensus        10 fhnengyekkgikf   23 (38)
                      |....-|||||..+
T Consensus         4 FlGhrhyEk~glay   17 (29)
T 1nyp_A            4 FLGHRHYERKGLAY   17 (29)
T ss_dssp             CSSSCCEEETTEEE
T ss_pred             CCCCEEEEECCEEC
T ss_conf             79991586999985


No 9  
>>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Bacteriophage T7} (A:35-192)
Probab=3.59  E-value=4e+02  Score=12.16  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=0.0

Q ss_pred             EECCCCC----CCCCEEEEEECCEEEEEEECC
Q ss_conf             6348873----123346677335278986326
Q 537021.9.peg.2   10 FHNENGY----EKKGIKFLISKSRIRCVQFGI   37 (38)
Q Consensus        10 fhnengy----ekkgikflisksrircvqfgi   37 (38)
                      ||+..++    .++-+.|-+..+|++.|-+||
T Consensus        85 f~~~~~~~~~~k~~kvpf~l~~~~LkVvvY~v  116 (158)
T 1a0i_A           85 FHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI  116 (158)
T ss_dssp             CC--------CCCSCCCCCBCTTTEEEEEEEE
T ss_pred             CCHHHHHHHHHCCCCCHHHHHCCCCEEEEEEE
T ss_conf             76788888761166745567207859999899


No 10 
>>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens} (A:)
Probab=3.39  E-value=4.1e+02  Score=12.14  Aligned_cols=7  Identities=71%  Similarity=1.241  Sum_probs=0.0

Q ss_pred             CEEEEEE
Q ss_conf             5278986
Q 537021.9.peg.2   28 SRIRCVQ   34 (38)
Q Consensus        28 srircvq   34 (38)
                      |+.||||
T Consensus        65 s~Frcvq   71 (124)
T 2kie_A           65 SHFRCVQ   71 (124)
T ss_dssp             SSCEEEE
T ss_pred             CCHHHHH
T ss_conf             5213257


Done!