Query 537021.9.peg.254_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 16:00:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_254.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jne_A Hypothetical protein Y 22.6 31 0.0009 17.5 0.8 18 8-33 81-99 (101) 2 >2jrp_A Putative cytoplasmic p 22.0 25 0.00073 18.0 0.3 10 24-33 30-39 (51) 3 >2fb7_A SM-like protein, LSM-1 8.0 1.9E+02 0.0055 13.8 1.5 16 19-34 18-34 (95) 4 >2vxe_A CG10686-PA; EDC3, CAR- 7.6 2E+02 0.0059 13.6 1.5 11 23-33 17-27 (88) 5 >1tt9_A Formimidoyltransferase 5.5 2.1E+02 0.0063 13.5 0.8 11 1-11 121-131 (180) 6 >1f2l_A Fractalkine; chemoattr 5.4 2.9E+02 0.0087 12.8 3.1 34 1-34 19-52 (76) 7 >3ke8_A 4-hydroxy-3-methylbut- 4.6 1.5E+02 0.0044 14.3 -0.6 23 2-24 22-47 (86) 8 >1nyp_A Pinch protein; LIM dom 4.2 3.4E+02 0.01 12.5 1.0 14 10-23 4-17 (29) 9 >1a0i_A DNA ligase; DNA replic 3.6 4E+02 0.012 12.2 1.0 28 10-37 85-116 (158) 10 >2kie_A Inositol polyphosphate 3.4 4.1E+02 0.012 12.1 0.8 7 28-34 65-71 (124) No 1 >>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:) Probab=22.61 E-value=31 Score=17.55 Aligned_cols=18 Identities=50% Similarity=0.866 Sum_probs=12.0 Q ss_pred EEEECC-CCCCCCCEEEEEECCEEEEE Q ss_conf 076348-87312334667733527898 Q 537021.9.peg.2 8 GYFHNE-NGYEKKGIKFLISKSRIRCV 33 (38) Q Consensus 8 gyfhne-ngyekkgikflisksrircv 33 (38) .||-|. || ||||||++-+ T Consensus 81 dYFCq~chg--------LiSKkRV~F~ 99 (101) T 2jne_A 81 DYFCQHGHG--------LISKKRVEFV 99 (101) T ss_dssp EEEETTTTE--------EECTTTSEEE T ss_pred HHHHCCCCC--------EEEEEEEEEE T ss_conf 354457985--------2470159998 No 2 >>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:31-81) Probab=22.02 E-value=25 Score=17.99 Aligned_cols=10 Identities=60% Similarity=0.806 Sum_probs=7.8 Q ss_pred EEECCEEEEE Q ss_conf 7733527898 Q 537021.9.peg.2 24 LISKSRIRCV 33 (38) Q Consensus 24 lisksrircv 33 (38) ||||||++-. T Consensus 30 LiSK~rV~f~ 39 (51) T 2jrp_A 30 LISKKRVNFV 39 (51) T ss_dssp CCCTTSSEEE T ss_pred EEEEEEEEEE T ss_conf 2571069999 No 3 >>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} (A:) Probab=8.01 E-value=1.9e+02 Score=13.78 Aligned_cols=16 Identities=50% Similarity=0.486 Sum_probs=10.6 Q ss_pred CCEE-EEEECCEEEEEE Q ss_conf 3346-677335278986 Q 537021.9.peg.2 19 KGIK-FLISKSRIRCVQ 34 (38) Q Consensus 19 kgik-flisksrircvq 34 (38) -|.+ -||||+.||-+- T Consensus 18 IG~~ISLISk~dIRYeG 34 (95) T 2fb7_A 18 IGSKISLISKAEIRYEG 34 (95) T ss_dssp SSEEEEEEETTTEEEEE T ss_pred CCCEEEEEECCCCEEEE T ss_conf 58869998768846899 No 4 >>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster} (A:) Probab=7.61 E-value=2e+02 Score=13.64 Aligned_cols=11 Identities=55% Similarity=0.537 Sum_probs=8.4 Q ss_pred EEEECCEEEEE Q ss_conf 67733527898 Q 537021.9.peg.2 23 FLISKSRIRCV 33 (38) Q Consensus 23 flisksrircv 33 (38) -||||+.||-+ T Consensus 17 sLISk~dIRYe 27 (88) T 2vxe_A 17 SLISKADIRYE 27 (88) T ss_dssp EEEETTTEEEE T ss_pred EEEECCCCEEE T ss_conf 99876883789 No 5 >>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A (A:1-180) Probab=5.54 E-value=2.1e+02 Score=13.49 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=7.7 Q ss_pred CCEEEEEEEEE Q ss_conf 96057700763 Q 537021.9.peg.2 1 VPCYFYGGYFH 11 (38) Q Consensus 1 vpcyfyggyfh 11 (38) ||.|+||---. T Consensus 121 vPVyLYg~Aa~ 131 (180) T 1tt9_A 121 VPVYLYGEAAQ 131 (180) T ss_pred CCEEEEHHHCC T ss_conf 86686233038 No 6 >>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo sapiens} (A:) Probab=5.42 E-value=2.9e+02 Score=12.81 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=28.5 Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEECCEEEEEE Q ss_conf 9605770076348873123346677335278986 Q 537021.9.peg.2 1 VPCYFYGGYFHNENGYEKKGIKFLISKSRIRCVQ 34 (38) Q Consensus 1 vpcyfyggyfhnengyekkgikflisksrircvq 34 (38) +|.-+.-+|.....+-.+.+|-|..-+.+.-|+. T Consensus 19 Ip~~~I~~y~~~~~~C~~~aVIf~tk~g~~iC~d 52 (76) T 1f2l_A 19 IPVALLIHYQQNQASCGKRAIILETRQHRLFCAD 52 (76) T ss_dssp CCGGGEEEEEECCGGGSSCCEEEEETTCCEEEEC T ss_pred CCHHHCEEEEECCCCCCCCEEEEEECCCCEEECC T ss_conf 9936822889889999987699997689978279 No 7 >>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A (A:21-106) Probab=4.61 E-value=1.5e+02 Score=14.26 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=0.0 Q ss_pred CEEEEEEEEECC---CCCCCCCEEEE Q ss_conf 605770076348---87312334667 Q 537021.9.peg.2 2 PCYFYGGYFHNE---NGYEKKGIKFL 24 (38) Q Consensus 2 pcyfyggyfhne---ngyekkgikfl 24 (38) |.|-+|---||. +-.+++|++++ T Consensus 22 ~i~tlG~lIHN~~vv~~L~~~Gv~~v 47 (86) T 3ke8_A 22 PIYVRHEVVHNRYVVDSLRERGAIFI 47 (86) T ss_dssp CEEEESCSSSCHHHHHHHHHHTEEEE T ss_pred CEEECCCCCCCHHHHHHHHHCCCEEE T ss_conf 78767746649899999998889993 No 8 >>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} (A:38-66) Probab=4.16 E-value=3.4e+02 Score=12.52 Aligned_cols=14 Identities=36% Similarity=0.861 Sum_probs=0.0 Q ss_pred EECCCCCCCCCEEE Q ss_conf 63488731233466 Q 537021.9.peg.2 10 FHNENGYEKKGIKF 23 (38) Q Consensus 10 fhnengyekkgikf 23 (38) |....-|||||..+ T Consensus 4 FlGhrhyEk~glay 17 (29) T 1nyp_A 4 FLGHRHYERKGLAY 17 (29) T ss_dssp CSSSCCEEETTEEE T ss_pred CCCCEEEEECCEEC T ss_conf 79991586999985 No 9 >>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Bacteriophage T7} (A:35-192) Probab=3.59 E-value=4e+02 Score=12.16 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=0.0 Q ss_pred EECCCCC----CCCCEEEEEECCEEEEEEECC Q ss_conf 6348873----123346677335278986326 Q 537021.9.peg.2 10 FHNENGY----EKKGIKFLISKSRIRCVQFGI 37 (38) Q Consensus 10 fhnengy----ekkgikflisksrircvqfgi 37 (38) ||+..++ .++-+.|-+..+|++.|-+|| T Consensus 85 f~~~~~~~~~~k~~kvpf~l~~~~LkVvvY~v 116 (158) T 1a0i_A 85 FHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI 116 (158) T ss_dssp CC--------CCCSCCCCCBCTTTEEEEEEEE T ss_pred CCHHHHHHHHHCCCCCHHHHHCCCCEEEEEEE T ss_conf 76788888761166745567207859999899 No 10 >>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens} (A:) Probab=3.39 E-value=4.1e+02 Score=12.14 Aligned_cols=7 Identities=71% Similarity=1.241 Sum_probs=0.0 Q ss_pred CEEEEEE Q ss_conf 5278986 Q 537021.9.peg.2 28 SRIRCVQ 34 (38) Q Consensus 28 srircvq 34 (38) |+.|||| T Consensus 65 s~Frcvq 71 (124) T 2kie_A 65 SHFRCVQ 71 (124) T ss_dssp SSCEEEE T ss_pred CCHHHHH T ss_conf 5213257 Done!