Query 537021.9.peg.254_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 16:15:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_254.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2gu2a1 c.56.5.7 (A:4-310) Asp 35.3 7.2 0.00053 18.7 1.5 27 8-34 276-302 (307) 2 d2jnea1 g.41.18.1 (A:1-71) Hyp 28.0 8.6 0.00062 18.3 0.8 10 24-33 60-69 (71) 3 d1laja_ b.121.4.5 (A:) Cucumov 9.6 50 0.0037 14.6 1.1 12 27-38 58-69 (174) 4 d2vxfa1 b.38.1.5 (A:6-85) LSM1 8.3 65 0.0047 14.1 1.3 11 23-33 8-18 (80) 5 d1mg4a_ d.15.11.1 (A:) Doublec 2.7 2E+02 0.015 11.7 0.7 21 10-31 9-29 (101) 6 d1f15a_ b.121.4.5 (A:) Cucumov 2.5 2.3E+02 0.017 11.5 1.1 12 27-38 40-51 (157) 7 d2fhta1 d.9.1.1 (A:4-71) Macro 2.4 2.4E+02 0.017 11.4 3.5 34 1-34 17-50 (68) 8 d1m1ha1 b.114.1.1 (A:51-131) N 2.2 2.5E+02 0.018 11.2 2.5 18 17-34 29-47 (81) 9 d3bgea1 a.80.1.2 (A:251-434) U 2.2 1.8E+02 0.013 11.9 -0.1 11 9-19 165-175 (184) 10 d1mmca_ g.3.1.2 (A:) Antimicro 2.1 1.7E+02 0.012 12.1 -0.4 9 28-36 11-19 (30) No 1 >d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=35.28 E-value=7.2 Score=18.67 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=20.3 Q ss_pred EEEECCCCCCCCCEEEEEECCEEEEEE Q ss_conf 076348873123346677335278986 Q 537021.9.peg.2 8 GYFHNENGYEKKGIKFLISKSRIRCVQ 34 (38) Q Consensus 8 gyfhnengyekkgikflisksrircvq 34 (38) --|-||-.|-.|+|-|..++...-+++ T Consensus 276 PvFiNEaAY~ek~iA~~~t~k~~~~~~ 302 (307) T d2gu2a1 276 PVFVNEAAYYEKKEAFAKTTKLTLNAK 302 (307) T ss_dssp EESTTCGGGTTTTCSEEEEEEEEEEEC T ss_pred EEECCHHHHHHHHHHHHHHEEEEEECH T ss_conf 771337997763156533203788521 No 2 >d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Probab=27.96 E-value=8.6 Score=18.32 Aligned_cols=10 Identities=60% Similarity=0.810 Sum_probs=8.0 Q ss_pred EEECCEEEEE Q ss_conf 7733527898 Q 537021.9.peg.2 24 LISKSRIRCV 33 (38) Q Consensus 24 lisksrircv 33 (38) ||||||++-+ T Consensus 60 LiSKkrv~f~ 69 (71) T d2jnea1 60 LISKKRVEFV 69 (71) T ss_dssp EECTTTSEEE T ss_pred EEEEEEEEEE T ss_conf 1072058998 No 3 >d1laja_ b.121.4.5 (A:) Cucumovirus coat protein {TAV (Tomato aspermy virus) [TaxId: 12315]} Probab=9.61 E-value=50 Score=14.63 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=9.6 Q ss_pred CCEEEEEEECCC Q ss_conf 352789863269 Q 537021.9.peg.2 27 KSRIRCVQFGIN 38 (38) Q Consensus 27 ksrircvqfgin 38 (38) |.+.+|+|+++| T Consensus 58 kk~vs~iq~rlN 69 (174) T d1laja_ 58 KKKVSCVQVRLN 69 (174) T ss_dssp TSEEEEEEEEEE T ss_pred HHHEEEEEEECC T ss_conf 322037896336 No 4 >d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]} Probab=8.33 E-value=65 Score=14.10 Aligned_cols=11 Identities=55% Similarity=0.558 Sum_probs=7.6 Q ss_pred EEEECCEEEEE Q ss_conf 67733527898 Q 537021.9.peg.2 23 FLISKSRIRCV 33 (38) Q Consensus 23 flisksrircv 33 (38) -||||+.||-+ T Consensus 8 sLISk~dIRYe 18 (80) T d2vxfa1 8 SLISKAEIRYE 18 (80) T ss_dssp EEEETTSCEEE T ss_pred EEEECCCCEEE T ss_conf 99876883789 No 5 >d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo sapiens) [TaxId: 9606]} Probab=2.70 E-value=2e+02 Score=11.72 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=13.1 Q ss_pred EECCCCCCCCCEEEEEECCEEE Q ss_conf 6348873123346677335278 Q 537021.9.peg.2 10 FHNENGYEKKGIKFLISKSRIR 31 (38) Q Consensus 10 fhnengyekkgikflisksrir 31 (38) |-|..-+ -+|++++|++.+++ T Consensus 9 ~rNGD~~-~~g~~~~i~~r~~~ 29 (101) T d1mg4a_ 9 YRNGDRY-FKGIVYAISPDRFR 29 (101) T ss_dssp EETTCSS-CCCEEEEECTTTCS T ss_pred EECCCCC-CCCEEEEECCCCCC T ss_conf 9699989-99899998953138 No 6 >d1f15a_ b.121.4.5 (A:) Cucumovirus coat protein {CMV (Cucumber mosaic virus), strain fny [TaxId: 12305]} Probab=2.51 E-value=2.3e+02 Score=11.46 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=8.8 Q ss_pred CCEEEEEEECCC Q ss_conf 352789863269 Q 537021.9.peg.2 27 KSRIRCVQFGIN 38 (38) Q Consensus 27 ksrircvqfgin 38 (38) |..+.|||..+| T Consensus 40 Kkkvs~vQ~rlN 51 (157) T d1f15a_ 40 KKLVSRLQIRVN 51 (157) T ss_dssp TSEEEEEEEEEE T ss_pred HHHEEEEEEECC T ss_conf 101257898507 No 7 >d2fhta1 d.9.1.1 (A:4-71) Macrophage inflammatory protein, MIP {Kaposi's sarcoma-associated herpesvirus, VMIP-II [TaxId: 37296]} Probab=2.36 E-value=2.4e+02 Score=11.36 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=26.4 Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEECCEEEEEE Q ss_conf 9605770076348873123346677335278986 Q 537021.9.peg.2 1 VPCYFYGGYFHNENGYEKKGIKFLISKSRIRCVQ 34 (38) Q Consensus 1 vpcyfyggyfhnengyekkgikflisksrircvq 34 (38) +|.-+.-+|.....+-..++|-|...+.+--|+. T Consensus 17 Ip~~~I~~y~~t~~~C~~~aVIf~tk~g~~vC~d 50 (68) T d2fhta1 17 LPQVLLSSWYPTSQLCSKPGVIFLTKRGRQVCAD 50 (68) T ss_dssp CCGGGEEEEEECCTTSSSCEEEEEETTSCEEEEE T ss_pred CCHHHEEEEEECCCCCCCCEEEEEECCCCEEECC T ss_conf 8923845999789999977699997789978279 No 8 >d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein NusG, insert domain {Aquifex aeolicus [TaxId: 63363]} Probab=2.21 E-value=2.5e+02 Score=11.25 Aligned_cols=18 Identities=33% Similarity=0.684 Sum_probs=12.0 Q ss_pred CCCCE-EEEEECCEEEEEE Q ss_conf 12334-6677335278986 Q 537021.9.peg.2 17 EKKGI-KFLISKSRIRCVQ 34 (38) Q Consensus 17 ekkgi-kflisksrircvq 34 (38) -|||| +|+|.....|.+. T Consensus 29 gkkgit~f~iedg~vrvle 47 (81) T d1m1ha1 29 GKKGVTTFRIENGEVKVVE 47 (81) T ss_dssp CSSSEEEEEECSSCEEEEE T ss_pred CCCCEEEEEECCCEEEEEE T ss_conf 3451689998288299871 No 9 >d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]} Probab=2.18 E-value=1.8e+02 Score=11.91 Aligned_cols=11 Identities=36% Similarity=0.751 Sum_probs=0.0 Q ss_pred EEECCCCCCCC Q ss_conf 76348873123 Q 537021.9.peg.2 9 YFHNENGYEKK 19 (38) Q Consensus 9 yfhnengyekk 19 (38) |...++|+|++ T Consensus 165 Y~P~~~G~E~~ 175 (184) T d3bgea1 165 YFPTNRGMEIQ 175 (184) T ss_dssp CCCCSSTTHHH T ss_pred ECCCCCCHHHH T ss_conf 47899837999 No 10 >d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Probab=2.12 E-value=1.7e+02 Score=12.13 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=0.0 Q ss_pred CEEEEEEEC Q ss_conf 527898632 Q 537021.9.peg.2 28 SRIRCVQFG 36 (38) Q Consensus 28 srircvqfg 36 (38) |-.-|.||| T Consensus 11 sgmccsqfg 19 (30) T d1mmca_ 11 SGMCCSQFG 19 (30) T ss_dssp TTCEECTTS T ss_pred CCCHHHHCC T ss_conf 865255427 Done!