RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.254_1
         (38 letters)



>1g91_A MPIF-1, myeloid progenitor inhibitory factor-1; chemokine,
          cytokine, CKB8, CCL23; NMR {Homo sapiens} SCOP: d.9.1.1
          PDB: 2hcc_A
          Length = 77

 Score = 25.5 bits (55), Expect = 2.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 1  VPCYFYGGYFHNENGYEKKGIKFLISKSRIRC 32
          +PC     YF   +   K G+ FL  K R  C
Sbjct: 20 IPCSLLESYFETNSECSKPGVIFLTKKGRRFC 51


>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
           ACY2_RAT, structural genomics, PSI, protein structure
           initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
           c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
          Length = 312

 Score = 24.1 bits (52), Expect = 8.1
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 10  FHNENGYEKKGIKFLISKSRIRCVQ 34
           F NE  Y +K   F  +       +
Sbjct: 281 FVNEAAYYEKKEAFAKTTKLTLNAK 305


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.150    0.496 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 357,907
Number of extensions: 8412
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 38
Length of database: 5,693,230
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,402,302
Effective search space: 140459852
Effective search space used: 140459852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.7 bits)