Query         537021.9.peg.26_1
Match_columns 49
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Sun May 22 17:55:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_26.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK13683 hypothetical protein;  30.2      16 0.00041   18.7   0.2   25    6-30     11-43  (88)
  2 COG3397 Uncharacterized protei  22.1      48  0.0012   16.4   1.4   25   14-41    128-152 (308)
  3 pfam05107 DUF694 Family of unk  20.6      63  0.0016   15.8   1.8   32   13-44      3-36  (278)
  4 TIGR00972 3a0107s01c2 phosphat  16.9      45  0.0012   16.5   0.4   10    4-13     90-99  (248)
  5 TIGR01684 viral_ppase viral ph  14.9      91  0.0023   15.0   1.5   27   11-37    198-224 (323)
  6 COG1777 Predicted transcriptio  14.6      59  0.0015   15.9   0.5   13   11-23     68-80  (217)
  7 pfam03067 Chitin_bind_3 Chitin  12.0 1.2E+02   0.003   14.4   1.4   30    5-34     87-118 (180)
  8 pfam08909 DUF1854 Domain of un  10.5 1.1E+02  0.0029   14.5   0.9   16    6-21     10-25  (133)
  9 pfam01065 Adeno_hexon Hexon, a   7.7      89  0.0023   15.1  -0.6   14    6-19    466-479 (487)
 10 COG2524 Predicted transcriptio   7.7 1.4E+02  0.0034   14.2   0.3   36   10-45    167-204 (294)

No 1  
>PRK13683 hypothetical protein; Provisional
Probab=30.20  E-value=16  Score=18.70  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=16.9

Q ss_pred             CCCCCCCCCCE--------EEEEEECCCCCCCC
Q ss_conf             34442242101--------11101135788862
Q 537021.9.peg.2    6 IPFPISIPRKY--------FHILISKKNKNPNA   30 (49)
Q Consensus         6 ipfpisiprky--------fhiliskknknpna   30 (49)
                      -|||+|+-||-        -.|.-+-+.-||+-
T Consensus        11 sP~PiSVQrKe~edA~~lYq~I~~am~~g~p~l   43 (88)
T PRK13683         11 SPMPVSVQRKEAEDAEALYQQIRQAMRSGNPRL   43 (88)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             876238885258899999999999986699856


No 2  
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.09  E-value=48  Score=16.37  Aligned_cols=25  Identities=36%  Similarity=0.546  Sum_probs=20.9

Q ss_pred             CCEEEEEEECCCCCCCCCHHHHHCCHHH
Q ss_conf             1011110113578886200132100011
Q 537021.9.peg.2   14 RKYFHILISKKNKNPNASLTKKKRSDSE   41 (49)
Q Consensus        14 rkyfhiliskknknpnasltkkkrsdse   41 (49)
                      -.|+|..|+|.+-|||.-|+   |+|-|
T Consensus       128 t~~w~yYiTK~~wdpnkPLt---~~dlE  152 (308)
T COG3397         128 TAYWKYYITKPGWDPNKPLT---WDDLE  152 (308)
T ss_pred             CCCEEEEECCCCCCCCCCCC---HHHCC
T ss_conf             73047998778889788856---77635


No 3  
>pfam05107 DUF694 Family of unknown function (DUF694). Family of hypothetical bacterial proteins.
Probab=20.65  E-value=63  Score=15.77  Aligned_cols=32  Identities=38%  Similarity=0.483  Sum_probs=23.5

Q ss_pred             CCCEEEEEEECCCCCCCCCHH--HHHCCHHHCCC
Q ss_conf             210111101135788862001--32100011063
Q 537021.9.peg.2   13 PRKYFHILISKKNKNPNASLT--KKKRSDSEKGI   44 (49)
Q Consensus        13 prkyfhiliskknknpnaslt--kkkrsdsekgi   44 (49)
                      -|..|-.|+.-++-|||.--.  .+-|-|.|.|.
T Consensus         3 nr~efl~l~dv~~~NPNGDP~~~N~PR~d~etg~   36 (278)
T pfam05107         3 NRYEFLFLYDVKNGNPNGDPLNGNRPRIDPETGT   36 (278)
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             5168999999547889999778999987877792


No 4  
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670   This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=16.94  E-value=45  Score=16.48  Aligned_cols=10  Identities=60%  Similarity=1.015  Sum_probs=7.3

Q ss_pred             CCCCCCCCCC
Q ss_conf             7634442242
Q 537021.9.peg.2    4 IPIPFPISIP   13 (49)
Q Consensus         4 ipipfpisip   13 (49)
                      -|=|||.||=
T Consensus        90 ~PNPFpmSIy   99 (248)
T TIGR00972        90 KPNPFPMSIY   99 (248)
T ss_pred             CCCCCCCCHH
T ss_conf             7897884055


No 5  
>TIGR01684 viral_ppase viral phosphatase; InterPro: IPR007827 This family contains uncharacterised baculoviral proteins..
Probab=14.86  E-value=91  Score=15.01  Aligned_cols=27  Identities=30%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             CCCCCEEEEEEECCCCCCCCCHHHHHC
Q ss_conf             242101111011357888620013210
Q 537021.9.peg.2   11 SIPRKYFHILISKKNKNPNASLTKKKR   37 (49)
Q Consensus        11 siprkyfhiliskknknpnasltkkkr   37 (49)
                      .|-+.||||.||.-+|.-.++.....|
T Consensus       198 kl~~RYFd~i~~gG~~~~~~~~~~t~~  224 (323)
T TIGR01684       198 KLDRRYFDIILSGGHKAEEYSTASTER  224 (323)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCE
T ss_conf             777512458981782025578864220


No 6  
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=14.61  E-value=59  Score=15.94  Aligned_cols=13  Identities=38%  Similarity=0.600  Sum_probs=8.5

Q ss_pred             CCCCCEEEEEEEC
Q ss_conf             2421011110113
Q 537021.9.peg.2   11 SIPRKYFHILISK   23 (49)
Q Consensus        11 siprkyfhilisk   23 (49)
                      .-|||||+|-...
T Consensus        68 g~~rKYY~Is~~~   80 (217)
T COG1777          68 GRPRKYYMISRNL   80 (217)
T ss_pred             CCCCCEEECCCCE
T ss_conf             8876226506770


No 7  
>pfam03067 Chitin_bind_3 Chitin binding domain. This domain is found associated with a wide variety of cellulose binding domain. This domain however is a chitin binding domain. This domain is found in isolation in baculoviral spheroidins and spindolins, protein of unknown function.
Probab=11.98  E-value=1.2e+02  Score=14.43  Aligned_cols=30  Identities=30%  Similarity=0.550  Sum_probs=22.4

Q ss_pred             CCCCCCCCCC--CEEEEEEECCCCCCCCCHHH
Q ss_conf             6344422421--01111011357888620013
Q 537021.9.peg.2    5 PIPFPISIPR--KYFHILISKKNKNPNASLTK   34 (49)
Q Consensus         5 pipfpisipr--kyfhiliskknknpnasltk   34 (49)
                      .+-|-++.|.  .||...|+|.+-+|+..||.
T Consensus        87 ~f~~~~TA~H~t~~~~~yITk~g~dp~~~Ltw  118 (180)
T pfam03067        87 TFTWTATAPHKTSYFEYYITKPGWDPNQPLTW  118 (180)
T ss_pred             EEEEEEEEECCCCEEEEEECCCCCCCCCCCCH
T ss_conf             89997553037875899976689898997677


No 8  
>pfam08909 DUF1854 Domain of unknown function (DUF1854). This potential domain is functionally uncharacterized. It is found at the C-terminus of a number of ATP transporter proteins suggesting this domain may be involved in ligand binding.
Probab=10.48  E-value=1.1e+02  Score=14.53  Aligned_cols=16  Identities=25%  Similarity=0.486  Sum_probs=12.7

Q ss_pred             CCCCCCCCCCEEEEEE
Q ss_conf             3444224210111101
Q 537021.9.peg.2    6 IPFPISIPRKYFHILI   21 (49)
Q Consensus         6 ipfpisiprkyfhili   21 (49)
                      -.|||+-|..|+-+.-
T Consensus        10 raFPisaP~~~isl~~   25 (133)
T pfam08909        10 RAFPITAPDEGISLVD   25 (133)
T ss_pred             EECCCCCCCCCEEEEC
T ss_conf             7556537877569986


No 9  
>pfam01065 Adeno_hexon Hexon, adenovirus major coat protein, N-terminal domain. Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organized so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices. The N and C-terminal domains adopt the same PNGase F-like fold although they are significantly different in length.
Probab=7.66  E-value=89  Score=15.07  Aligned_cols=14  Identities=43%  Similarity=0.930  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCEEEE
Q ss_conf             34442242101111
Q 537021.9.peg.2    6 IPFPISIPRKYFHI   19 (49)
Q Consensus         6 ipfpisiprkyfhi   19 (49)
                      .+|-|.+|.|+|-|
T Consensus       466 ~~FhIQVPQKFFAI  479 (487)
T pfam01065       466 CKFHIQVPQKFFAI  479 (487)
T ss_pred             EEEEEECCHHHHHH
T ss_conf             00477034488777


No 10 
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=7.65  E-value=1.4e+02  Score=14.17  Aligned_cols=36  Identities=36%  Similarity=0.540  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEECC--CCCCCCCHHHHHCCHHHCCCC
Q ss_conf             224210111101135--788862001321000110631
Q 537021.9.peg.2   10 ISIPRKYFHILISKK--NKNPNASLTKKKRSDSEKGIH   45 (49)
Q Consensus        10 isiprkyfhiliskk--nknpnasltkkkrsdsekgih   45 (49)
                      +|||++-.+-++|++  --+|+.|+..--+--.|+||+
T Consensus       167 ~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~  204 (294)
T COG2524         167 VSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIR  204 (294)
T ss_pred             EECCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCC
T ss_conf             64573026662667846766886399999999972866


Done!