Query 537021.9.peg.26_1
Match_columns 49
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 11:00:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_26.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2do3_A Transcription elongati 19.3 41 0.0012 16.4 0.9 18 2-19 3-20 (69)
2 >3kbg_A 30S ribosomal protein 17.7 55 0.0016 15.7 1.3 18 9-26 55-72 (81)
3 >1g2c_B Fusion protein (F); me 15.4 6.1 0.00018 20.4 -4.1 33 9-41 4-36 (43)
4 >2iny_A Hexon protein, late pr 14.2 43 0.0013 16.3 -0.0 15 5-19 184-198 (266)
5 >2obe_A Hexon, PII; trimer, do 10.7 50 0.0015 16.0 -0.6 14 6-19 119-132 (200)
6 >1afh_A Maize nonspecific lipi 4.8 2.1E+02 0.0062 12.9 0.3 9 3-11 76-84 (93)
7 >1jgn_B PAIP2, polyadenylate-b 4.4 2.9E+02 0.0086 12.2 0.8 8 23-30 3-10 (26)
8 >1n13_A PVLARGDC, pyruvoyl-dep 4.4 3.2E+02 0.0095 12.0 1.5 24 5-28 7-30 (52)
9 >1mm4_A CRCA protein, PAGP enz 3.3 3.4E+02 0.01 11.9 0.3 12 1-12 97-108 (149)
10 >3cfz_A UPF0100 protein MJ1186 2.9 3E+02 0.009 12.1 -0.3 13 1-13 83-95 (126)
No 1
>>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=19.27 E-value=41 Score=16.38 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCEEEE
Q ss_conf 867634442242101111
Q 537021.9.peg.2 2 TNIPIPFPISIPRKYFHI 19 (49)
Q Consensus 2 tnipipfpisiprkyfhi 19 (49)
.|-|+.||.+--||||..
T Consensus 3 ~~~~l~~p~~~LrK~F~~ 20 (69)
T 2do3_A 3 SGSSGEFPAQELRKYFKM 20 (69)
T ss_dssp SCSCCCCCCCCCCSSCCT
T ss_pred CCCEEEECHHHHEECCCC
T ss_conf 873877337990420579
No 2
>>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} (A:1-81)
Probab=17.72 E-value=55 Score=15.75 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=15.0
Q ss_pred CCCCCCCEEEEEEECCCC
Q ss_conf 422421011110113578
Q 537021.9.peg.2 9 PISIPRKYFHILISKKNK 26 (49)
Q Consensus 9 pisiprkyfhiliskknk 26 (49)
-||||.++|.++...|.+
T Consensus 55 VIsi~~e~yRvl~d~kgr 72 (81)
T 3kbg_A 55 VIEINGESYRVVYNDQGA 72 (81)
T ss_dssp EEEETTEEEEEEECTTSC
T ss_pred EEEECCCEEEEEECCCCE
T ss_conf 999799779999858973
No 3
>>1g2c_B Fusion protein (F); membrane fusion, pneumovirus, HRSV, viral protein; 2.30A {Human respiratory syncytial virusstrain rss-2} (B:)
Probab=15.40 E-value=6.1 Score=20.42 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCHHHHHCCHHH
Q ss_conf 422421011110113578886200132100011
Q 537021.9.peg.2 9 PISIPRKYFHILISKKNKNPNASLTKKKRSDSE 41 (49)
Q Consensus 9 pisiprkyfhiliskknknpnasltkkkrsdse 41 (49)
|.+.|..-|..-|+.-|..-|.|++--++||.-
T Consensus 4 pl~fp~d~fd~si~~v~~~inqs~afir~sdel 36 (43)
T 1g2c_B 4 PLVFPSDEFDASISQVNEKINQSLAFIRKSDEL 36 (43)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 744771122106999999997889999843999
No 4
>>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat protein, crystal packing, nanotechnology, viral jelly roll, viral protein; 3.90A {Fowl adenovirus 1} (A:56-130,A:274-359,A:503-607)
Probab=14.19 E-value=43 Score=16.30 Aligned_cols=15 Identities=47% Similarity=0.853 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCEEEE
Q ss_conf 634442242101111
Q 537021.9.peg.2 5 PIPFPISIPRKYFHI 19 (49)
Q Consensus 5 pipfpisiprkyfhi 19 (49)
-.||-|.+|.|||.|
T Consensus 184 y~~fhiqvpqkffai 198 (266)
T 2iny_A 184 YCRFHIQVPQKYFAI 198 (266)
T ss_dssp CCCCCEEECCCCTTT
T ss_pred CCCEEEECCHHHHHH
T ss_conf 300277034488777
No 5
>>2obe_A Hexon, PII; trimer, double-barrel subunit, viral jellyroll, base, hypervariable tower, viral protein; 2.10A {Simian adenovirus 25} PDB: 1p2z_A* 1p30_A 2bvi_F (A:49-118,A:305-339,A:523-617)
Probab=10.70 E-value=50 Score=15.98 Aligned_cols=14 Identities=50% Similarity=1.224 Sum_probs=12.2
Q ss_pred CCCCCCCCCCEEEE
Q ss_conf 34442242101111
Q 537021.9.peg.2 6 IPFPISIPRKYFHI 19 (49)
Q Consensus 6 ipfpisiprkyfhi 19 (49)
.+|.|.+|.|+|.|
T Consensus 119 ~~fhiqvpqkffai 132 (200)
T 2obe_A 119 VPFHIQVPQKFFAI 132 (200)
T ss_dssp EEEEEEEECCCTTT
T ss_pred EEEEEECCHHHHHH
T ss_conf 01477034488777
No 6
>>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} (A:)
Probab=4.82 E-value=2.1e+02 Score=12.91 Aligned_cols=9 Identities=44% Similarity=0.995 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q ss_conf 676344422
Q 537021.9.peg.2 3 NIPIPFPIS 11 (49)
Q Consensus 3 nipipfpis 11 (49)
++.+|||||
T Consensus 76 ~v~l~~pis 84 (93)
T 1afh_A 76 GVSIPYTIS 84 (93)
T ss_dssp HCCCSSCCS
T ss_pred CCCCCCCCC
T ss_conf 789999988
No 7
>>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} (B:)
Probab=4.42 E-value=2.9e+02 Score=12.23 Aligned_cols=8 Identities=75% Similarity=0.941 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q ss_conf 35788862
Q 537021.9.peg.2 23 KKNKNPNA 30 (49)
Q Consensus 23 kknknpna 30 (49)
|.|-||||
T Consensus 3 ksnlnpna 10 (26)
T 1jgn_B 3 KSNLNPNA 10 (26)
T ss_dssp CCSSCTTC
T ss_pred CCCCCCCH
T ss_conf 36689885
No 8
>>1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} (A:)
Probab=4.37 E-value=3.2e+02 Score=12.02 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 634442242101111011357888
Q 537021.9.peg.2 5 PIPFPISIPRKYFHILISKKNKNP 28 (49)
Q Consensus 5 pipfpisiprkyfhiliskknknp 28 (49)
||-+|...|.|||-.--+-..+++
T Consensus 7 ~ih~~~~~Pkk~~lvag~~Eg~t~ 30 (52)
T 1n13_A 7 PLHAYFKLPNTVSLVAGSSEGETP 30 (52)
T ss_dssp CCSCCCCCCCEEEEEEEEEECSSH
T ss_pred CCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 322653489679998603568870
No 9
>>1mm4_A CRCA protein, PAGP enzyme; beta barrel, palmitoyltransferase; NMR {Escherichia coli} (A:22-170)
Probab=3.26 E-value=3.4e+02 Score=11.90 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q ss_conf 986763444224
Q 537021.9.peg.2 1 MTNIPIPFPISI 12 (49)
Q Consensus 1 mtnipipfpisi 12 (49)
+.+||||.+..+
T Consensus 97 ~~yiP~P~~LPl 108 (149)
T 1mm4_A 97 WNYIPLPVLLPL 108 (149)
T ss_dssp SSSCCEEEEEEE
T ss_pred CCCCCCCCCCEE
T ss_conf 102777510000
No 10
>>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} (A:1-86,A:253-292)
Probab=2.87 E-value=3e+02 Score=12.13 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 9867634442242
Q 537021.9.peg.2 1 MTNIPIPFPISIP 13 (49)
Q Consensus 1 mtnipipfpisip 13 (49)
++|.||-||+.++
T Consensus 83 a~n~~~~~~~~v~ 95 (126)
T 3cfz_A 83 ARNEPIVYGMTVP 95 (126)
T ss_dssp EECCCCEEEEECC
T ss_pred HHCCEEEEEEEEE
T ss_conf 1045555789998
Done!