RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.26_1
         (49 letters)



>gnl|CDD|181573 PRK08878, PRK08878, adenosylcobinamide-phosphate synthase;
          Provisional.
          Length = 317

 Score = 24.7 bits (54), Expect = 5.6
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 4  IPIP---FPISIPRKYFHILISKKNKNPNAS 31
          +PIP    P+++  K+  +L SK N   +  
Sbjct: 27 LPIPHAAHPVTLWHKFAELLASKVNTPHSYQ 57


>gnl|CDD|183898 PRK13211, PRK13211, N-acetylglucosamine-binding protein A;
           Reviewed.
          Length = 478

 Score = 24.6 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 3/20 (15%)

Query: 15  KYFHILISKKNKNPNASLTK 34
           +Y+   I+K++ NPN  LT+
Sbjct: 119 RYY---ITKQDWNPNQPLTR 135


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 736,877
Number of extensions: 27128
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 6
Length of query: 49
Length of database: 5,994,473
Length adjustment: 22
Effective length of query: 27
Effective length of database: 5,519,097
Effective search space: 149015619
Effective search space used: 149015619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)