RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.26_1 (49 letters) >d2bema_ b.1.18.2 (A:) Chitin-binding protein CBP21 {Serratia marcescens [TaxId: 615]} Length = 170 Score = 24.0 bits (52), Expect = 3.1 Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%) Query: 15 KYFHILISKKNKNPNASLTKKKRSDSE 41 + I+K N + + LT R+ + Sbjct: 90 TSWRYFITKPNWDASQPLT---RASFD 113 >g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 159 Score = 23.6 bits (51), Expect = 4.5 Identities = 2/13 (15%), Positives = 4/13 (30%) Query: 5 PIPFPISIPRKYF 17 P+ +P Sbjct: 1 PLHAYFKLPNTVS 13 >d1y6xa1 a.204.1.4 (A:7-93) Phosphoribosyl-ATP pyrophosphatase HisE {Mycobacterium tuberculosis [TaxId: 1773]} Length = 87 Score = 22.8 bits (49), Expect = 9.2 Identities = 6/31 (19%), Positives = 8/31 (25%) Query: 17 FHILISKKNKNPNASLTKKKRSDSEKGIHTK 47 F L + P S T + K Sbjct: 8 FAELGDRARTRPADSTTVAALDGGVHALGKK 38 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.313 0.131 0.376 Gapped Lambda K H 0.267 0.0654 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 169,118 Number of extensions: 4717 Number of successful extensions: 23 Number of sequences better than 10.0: 1 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 6 Length of query: 49 Length of database: 2,407,596 Length adjustment: 21 Effective length of query: 28 Effective length of database: 2,119,266 Effective search space: 59339448 Effective search space used: 59339448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 47 (22.0 bits)