RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.26_1
         (49 letters)



>d2bema_ b.1.18.2 (A:) Chitin-binding protein CBP21 {Serratia
           marcescens [TaxId: 615]}
          Length = 170

 Score = 24.0 bits (52), Expect = 3.1
 Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 15  KYFHILISKKNKNPNASLTKKKRSDSE 41
             +   I+K N + +  LT   R+  +
Sbjct: 90  TSWRYFITKPNWDASQPLT---RASFD 113


>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 159

 Score = 23.6 bits (51), Expect = 4.5
 Identities = 2/13 (15%), Positives = 4/13 (30%)

Query: 5  PIPFPISIPRKYF 17
          P+     +P    
Sbjct: 1  PLHAYFKLPNTVS 13


>d1y6xa1 a.204.1.4 (A:7-93) Phosphoribosyl-ATP pyrophosphatase
          HisE {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 87

 Score = 22.8 bits (49), Expect = 9.2
 Identities = 6/31 (19%), Positives = 8/31 (25%)

Query: 17 FHILISKKNKNPNASLTKKKRSDSEKGIHTK 47
          F  L  +    P  S T          +  K
Sbjct: 8  FAELGDRARTRPADSTTVAALDGGVHALGKK 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 169,118
Number of extensions: 4717
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 6
Length of query: 49
Length of database: 2,407,596
Length adjustment: 21
Effective length of query: 28
Effective length of database: 2,119,266
Effective search space: 59339448
Effective search space used: 59339448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)