Query         537021.9.peg.298_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Wed May 25 16:10:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_298.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam05372 Delta_lysin Delta ly  26.6      53  0.0013   16.0   2.3   17    1-17      1-17  (26)
  2 pfam03248 Rer1 Rer1 family. RE  17.5      38 0.00096   16.7   0.1   16    9-24    151-166 (175)
  3 KOG3379 consensus               13.8      98  0.0025   14.6   1.4   24    3-26     60-83  (150)
  4 pfam10251 PEN-2 Presenilin enh  13.6 1.3E+02  0.0033   14.0   2.3   16   13-29     45-60  (94)
  5 pfam07867 DUF1654 Protein of u  11.4 1.5E+02  0.0039   13.7   1.8   15    5-19      4-19  (73)
  6 PRK09343 prefoldin subunit bet   9.0 1.9E+02  0.0049   13.2   2.0   26    4-33     55-80  (122)
  7 TIGR00692 tdh L-threonine 3-de   7.9 2.1E+02  0.0053   13.0   1.4   16   13-28    288-303 (341)
  8 KOG0871 consensus                7.7 1.9E+02  0.0048   13.2   1.1   11    9-19     15-25  (156)
  9 pfam04912 Dynamitin Dynamitin.   7.3 2.3E+02  0.0059   12.8   3.9   30    3-32    297-326 (387)
 10 KOG1688 consensus                7.1 1.6E+02   0.004   13.6   0.4   15   10-24    162-176 (188)

No 1  
>pfam05372 Delta_lysin Delta lysin family. Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers. The precise mode of action of delta-lysis is unclear.
Probab=26.57  E-value=53  Score=15.96  Aligned_cols=17  Identities=47%  Similarity=0.655  Sum_probs=13.6

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             90479999999999987
Q 537021.9.peg.2    1 MAHDLYETIGTIQKMIK   17 (38)
Q Consensus         1 mahdlyetigtiqkmik   17 (38)
                      ||.|.-.|||..-|.|-
T Consensus         1 Ma~DIisTI~dfvKlI~   17 (26)
T pfam05372         1 MAADIISTIGDFVKLII   17 (26)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             90789999999999999


No 2  
>pfam03248 Rer1 Rer1 family. RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.
Probab=17.53  E-value=38  Score=16.68  Aligned_cols=16  Identities=44%  Similarity=0.472  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999877999999
Q 537021.9.peg.2    9 IGTIQKMIKTKYVVSS   24 (38)
Q Consensus         9 igtiqkmiktkyvvss   24 (38)
                      ...||.|||-||+--+
T Consensus       151 krqI~HMiKYrYvPf~  166 (175)
T pfam03248       151 RRQIKHMIKYKYVPFD  166 (175)
T ss_pred             HHHHHHHHHHCCCCCC
T ss_conf             9999999854876642


No 3  
>KOG3379 consensus
Probab=13.83  E-value=98  Score=14.63  Aligned_cols=24  Identities=29%  Similarity=0.628  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             479999999999987799999999
Q 537021.9.peg.2    3 HDLYETIGTIQKMIKTKYVVSSLI   26 (38)
Q Consensus         3 hdlyetigtiqkmiktkyvvssli   26 (38)
                      .||+.|.--+|++++.-|-.+|+-
T Consensus        60 aDlF~t~~~v~~~lek~~~~ts~t   83 (150)
T KOG3379          60 ADLFTTVQKVQRVLEKHYNATSLT   83 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             999999999999999982666158


No 4  
>pfam10251 PEN-2 Presenilin enhancer-2 subunit of gamma secretase. This entry is a short 101 peptide protein which is the smallest subunit of the gamma-secretase aspartyl protease complex that catalyses the intramembrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. PEN-2 adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space, and the C-terminal domain maintains PS stability within the complex.
Probab=13.64  E-value=1.3e+02  Score=14.02  Aligned_cols=16  Identities=56%  Similarity=0.708  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99987799999999977
Q 537021.9.peg.2   13 QKMIKTKYVVSSLIKSL   29 (38)
Q Consensus        13 qkmiktkyvvssliksl   29 (38)
                      |+-|| +||+-|.|-.+
T Consensus        45 q~~Ir-~YVi~SaIG~~   60 (94)
T pfam10251        45 QKQIR-KYVIRSAIGFL   60 (94)
T ss_pred             CHHHH-HHHHHHHHHHH
T ss_conf             07999-99999999899


No 5  
>pfam07867 DUF1654 Protein of unknown function (DUF1654). This family consists of proteins from the Pseudomonadaceae.
Probab=11.39  E-value=1.5e+02  Score=13.68  Aligned_cols=15  Identities=47%  Similarity=0.804  Sum_probs=10.4

Q ss_pred             HHHHHHH-HHHHHHHH
Q ss_conf             9999999-99998779
Q 537021.9.peg.2    5 LYETIGT-IQKMIKTK   19 (38)
Q Consensus         5 lyetigt-iqkmiktk   19 (38)
                      -||.+|. ||+||...
T Consensus         4 ~~e~Lg~Rvq~~InsP   19 (73)
T pfam07867         4 SYERLGLRVQKMINSP   19 (73)
T ss_pred             HHHHHHHHHHHHHCCH
T ss_conf             8999999999997695


No 6  
>PRK09343 prefoldin subunit beta; Provisional
Probab=8.98  E-value=1.9e+02  Score=13.19  Aligned_cols=26  Identities=35%  Similarity=0.685  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             799999999999877999999999775333
Q 537021.9.peg.2    4 DLYETIGTIQKMIKTKYVVSSLIKSLNEVK   33 (38)
Q Consensus         4 dlyetigtiqkmiktkyvvsslikslnevk   33 (38)
                      .+|..+|++  |||+.+  ..+++.|+|-+
T Consensus        55 ~vYK~VG~v--Lik~~k--~~~~~eL~ekk   80 (122)
T PRK09343         55 PVYKTVGNL--LVKVDK--NKVIKELKEQK   80 (122)
T ss_pred             HHHHHHCHH--HEECCH--HHHHHHHHHHH
T ss_conf             799983566--402349--99999999999


No 7  
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627   L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=7.88  E-value=2.1e+02  Score=13.04  Aligned_cols=16  Identities=56%  Similarity=0.696  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9998779999999997
Q 537021.9.peg.2   13 QKMIKTKYVVSSLIKS   28 (38)
Q Consensus        13 qkmiktkyvvssliks   28 (38)
                      .+|..|=|-||.||.|
T Consensus       288 R~mfeTWy~vs~LiqS  303 (341)
T TIGR00692       288 RKMFETWYKVSRLIQS  303 (341)
T ss_pred             CCHHHHHHHHHHHHCC
T ss_conf             5046789999998426


No 8  
>KOG0871 consensus
Probab=7.73  E-value=1.9e+02  Score=13.23  Aligned_cols=11  Identities=45%  Similarity=0.543  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999998779
Q 537021.9.peg.2    9 IGTIQKMIKTK   19 (38)
Q Consensus         9 igtiqkmiktk   19 (38)
                      -.||+||||.-
T Consensus        15 kAtv~KmIke~   25 (156)
T KOG0871          15 KATVNKMIKEM   25 (156)
T ss_pred             HHHHHHHHHHH
T ss_conf             88899999986


No 9  
>pfam04912 Dynamitin Dynamitin. Dynamitin is a subunit of the microtubule-dependent motor complex and in implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS).
Probab=7.28  E-value=2.3e+02  Score=12.79  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             479999999999987799999999977533
Q 537021.9.peg.2    3 HDLYETIGTIQKMIKTKYVVSSLIKSLNEV   32 (38)
Q Consensus         3 hdlyetigtiqkmiktkyvvsslikslnev   32 (38)
                      +.||+++.+|+.|-..---|-.-.++|+.+
T Consensus       297 ~eLY~~l~~~~~~~~~LP~vl~RL~sL~~l  326 (387)
T pfam04912       297 SELYELMQKWDPVVSSLPDVVNRLLTLKSL  326 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999875777763515899999999999


No 10 
>KOG1688 consensus
Probab=7.10  E-value=1.6e+02  Score=13.65  Aligned_cols=15  Identities=33%  Similarity=0.501  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999877999999
Q 537021.9.peg.2   10 GTIQKMIKTKYVVSS   24 (38)
Q Consensus        10 gtiqkmiktkyvvss   24 (38)
                      -.||.|||-+|+--+
T Consensus       162 RqI~HMiKyrY~Pf~  176 (188)
T KOG1688         162 RQIAHMIKYRYIPFD  176 (188)
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             999998861335401


Done!