Query 537021.9.peg.298_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 16:17:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_298.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dtc_A Acetyl-delta-toxin; NMR 32.8 22 0.00091 16.8 2.4 16 1-16 1-16 (26)
2 2wp0_C Chromosomal replication 7.6 1.4E+02 0.0057 12.9 2.4 19 11-30 53-71 (112)
3 1eci_B Ectatomin; pore-forming 4.7 1.7E+02 0.0073 12.3 0.6 10 10-19 22-31 (34)
4 1x4p_A Putative splicing facto 4.3 1.3E+02 0.0054 13.0 -0.3 15 7-23 6-20 (66)
5 1hdj_A Human HSP40, HDJ-1; mol 3.8 1.4E+02 0.006 12.8 -0.4 21 1-21 1-25 (77)
6 1oks_A RNA polymerase alpha su 3.6 2.6E+02 0.011 11.5 1.7 10 19-28 4-13 (56)
7 2knr_A Uncharacterized protein 3.1 2.9E+02 0.012 11.2 1.0 20 16-35 6-25 (121)
8 2dwf_A Pulmonary surfactant-as 3.0 3E+02 0.013 11.2 0.8 10 8-17 7-16 (34)
9 3nft_A Translocator protein BI 2.7 3.2E+02 0.013 11.0 1.7 12 21-32 285-296 (303)
10 2rkl_A Vacuolar protein sortin 2.6 3.3E+02 0.014 11.0 3.4 20 4-25 12-31 (53)
No 1
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=32.77 E-value=22 Score=16.79 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 9047999999999998
Q 537021.9.peg.2 1 MAHDLYETIGTIQKMI 16 (38)
Q Consensus 1 mahdlyetigtiqkmi 16 (38)
||.|...|||..-|.|
T Consensus 1 maqdiistigdlvkwi 16 (26)
T 1dtc_A 1 MAQDIISTIGDLVKWI 16 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9078999999999999
No 2
>2wp0_C Chromosomal replication initiator protein DNAA; DNA binding protein, nucleotide-binding, DNA replication initiation, DIAA, HOBA; 2.67A {Helicobacter pylori}
Probab=7.55 E-value=1.4e+02 Score=12.86 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999877999999999775
Q 537021.9.peg.2 11 TIQKMIKTKYVVSSLIKSLN 30 (38)
Q Consensus 11 tiqkmiktkyvvssliksln 30 (38)
-|.+.|||||. ..|..-++
T Consensus 53 ~iA~wIktKY~-a~l~Ei~t 71 (112)
T 2wp0_C 53 VLCTTITAKYG-ALLKEILS 71 (112)
T ss_dssp HHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHH
T ss_conf 99999999999-99999971
No 3
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=4.66 E-value=1.7e+02 Score=12.33 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998779
Q 537021.9.peg.2 10 GTIQKMIKTK 19 (38)
Q Consensus 10 gtiqkmiktk 19 (38)
|.|..|||.|
T Consensus 22 gsiatmikkk 31 (34)
T 1eci_B 22 GSIATMIKKK 31 (34)
T ss_dssp TTHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 1599999885
No 4
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=4.26 E-value=1.3e+02 Score=12.98 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999987799999
Q 537021.9.peg.2 7 ETIGTIQKMIKTKYVVS 23 (38)
Q Consensus 7 etigtiqkmiktkyvvs 23 (38)
+++|||.||. .||+.
T Consensus 6 ~~~~~Idk~A--~yVak 20 (66)
T 1x4p_A 6 SGVGTIDQLV--KRVIE 20 (66)
T ss_dssp CSSHHHHHHH--HHHHH
T ss_pred HHHHHHHHHH--HHHHH
T ss_conf 0999999999--99995
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=3.79 E-value=1.4e+02 Score=12.75 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=12.8
Q ss_pred CCHHHHHHHHH----HHHHHHHHHH
Q ss_conf 90479999999----9999877999
Q 537021.9.peg.2 1 MAHDLYETIGT----IQKMIKTKYV 21 (38)
Q Consensus 1 mahdlyetigt----iqkmiktkyv 21 (38)
|+-|.|+.+|. -+.-|+..|-
T Consensus 1 m~kd~Y~vLgv~~~as~~eIk~ay~ 25 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYR 25 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHH
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9997598859999959999999999
No 6
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=3.60 E-value=2.6e+02 Score=11.50 Aligned_cols=10 Identities=50% Similarity=0.717 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q 537021.9.peg.2 19 KYVVSSLIKS 28 (38)
Q Consensus 19 kyvvssliks 28 (38)
+-|..|+|||
T Consensus 4 rsVirSiIkS 13 (56)
T 1oks_A 4 RSVIRSIIKS 13 (56)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8999999998
No 7
>2knr_A Uncharacterized protein ATC0905; methods development, structural genomics, protein northeast structural genomics consortium (NESG); NMR {Agrobacterium tumefaciens str}
Probab=3.11 E-value=2.9e+02 Score=11.25 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 87799999999977533311
Q 537021.9.peg.2 16 IKTKYVVSSLIKSLNEVKTF 35 (38)
Q Consensus 16 iktkyvvsslikslnevktf 35 (38)
+||...||++|+-.+-.-.|
T Consensus 6 Lks~lwV~AliRr~~~~g~~ 25 (121)
T 2knr_A 6 LKSEMFVSALIRRVFAAGGF 25 (121)
T ss_dssp CCHHHHHHHHHHHHHHTTCE
T ss_pred EHHHHHHHHHHHHHHHCCCC
T ss_conf 25899999999999768995
No 8
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=2.96 E-value=3e+02 Score=11.16 Aligned_cols=10 Identities=50% Similarity=0.514 Sum_probs=7.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999987
Q 537021.9.peg.2 8 TIGTIQKMIK 17 (38)
Q Consensus 8 tigtiqkmik 17 (38)
-|..||.||.
T Consensus 7 likriqamip 16 (34)
T 2dwf_A 7 LIKRIQAMIP 16 (34)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHCC
T ss_conf 9999998777
No 9
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=2.74 E-value=3.2e+02 Score=11.03 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999977533
Q 537021.9.peg.2 21 VVSSLIKSLNEV 32 (38)
Q Consensus 21 vvsslikslnev 32 (38)
|.||.|++|.|-
T Consensus 285 VLSstIssL~ds 296 (303)
T 3nft_A 285 VLSGAISTLTDT 296 (303)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 10
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae}
Probab=2.64 E-value=3.3e+02 Score=10.96 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999998779999999
Q 537021.9.peg.2 4 DLYETIGTIQKMIKTKYVVSSL 25 (38)
Q Consensus 4 dlyetigtiqkmiktkyvvssl 25 (38)
|-.|.|...||. .||.+|.|
T Consensus 12 ~~~e~i~~aqK~--aK~AiSAL 31 (53)
T 2rkl_A 12 DRASKIEQIQKL--AKYAISAL 31 (53)
T ss_dssp HHHHHHHHHHHH--HHHHHHHH
T ss_pred CCHHHHHHHHHH--HHHHHHHC
T ss_conf 859999999999--99999870
Done!