Query 537021.9.peg.298_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 16:17:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_298.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1dtc_A Acetyl-delta-toxin; NMR 32.8 22 0.00091 16.8 2.4 16 1-16 1-16 (26) 2 2wp0_C Chromosomal replication 7.6 1.4E+02 0.0057 12.9 2.4 19 11-30 53-71 (112) 3 1eci_B Ectatomin; pore-forming 4.7 1.7E+02 0.0073 12.3 0.6 10 10-19 22-31 (34) 4 1x4p_A Putative splicing facto 4.3 1.3E+02 0.0054 13.0 -0.3 15 7-23 6-20 (66) 5 1hdj_A Human HSP40, HDJ-1; mol 3.8 1.4E+02 0.006 12.8 -0.4 21 1-21 1-25 (77) 6 1oks_A RNA polymerase alpha su 3.6 2.6E+02 0.011 11.5 1.7 10 19-28 4-13 (56) 7 2knr_A Uncharacterized protein 3.1 2.9E+02 0.012 11.2 1.0 20 16-35 6-25 (121) 8 2dwf_A Pulmonary surfactant-as 3.0 3E+02 0.013 11.2 0.8 10 8-17 7-16 (34) 9 3nft_A Translocator protein BI 2.7 3.2E+02 0.013 11.0 1.7 12 21-32 285-296 (303) 10 2rkl_A Vacuolar protein sortin 2.6 3.3E+02 0.014 11.0 3.4 20 4-25 12-31 (53) No 1 >1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A* Probab=32.77 E-value=22 Score=16.79 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.4 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 9047999999999998 Q 537021.9.peg.2 1 MAHDLYETIGTIQKMI 16 (38) Q Consensus 1 mahdlyetigtiqkmi 16 (38) ||.|...|||..-|.| T Consensus 1 maqdiistigdlvkwi 16 (26) T 1dtc_A 1 MAQDIISTIGDLVKWI 16 (26) T ss_dssp CHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 9078999999999999 No 2 >2wp0_C Chromosomal replication initiator protein DNAA; DNA binding protein, nucleotide-binding, DNA replication initiation, DIAA, HOBA; 2.67A {Helicobacter pylori} Probab=7.55 E-value=1.4e+02 Score=12.86 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999877999999999775 Q 537021.9.peg.2 11 TIQKMIKTKYVVSSLIKSLN 30 (38) Q Consensus 11 tiqkmiktkyvvssliksln 30 (38) -|.+.|||||. ..|..-++ T Consensus 53 ~iA~wIktKY~-a~l~Ei~t 71 (112) T 2wp0_C 53 VLCTTITAKYG-ALLKEILS 71 (112) T ss_dssp HHHHHHHHHHH-HHHHHHHH T ss_pred HHHHHHHHHHH-HHHHHHHH T ss_conf 99999999999-99999971 No 3 >1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1 Probab=4.66 E-value=1.7e+02 Score=12.33 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=4.7 Q ss_pred HHHHHHHHHH Q ss_conf 9999998779 Q 537021.9.peg.2 10 GTIQKMIKTK 19 (38) Q Consensus 10 gtiqkmiktk 19 (38) |.|..|||.| T Consensus 22 gsiatmikkk 31 (34) T 1eci_B 22 GSIATMIKKK 31 (34) T ss_dssp TTHHHHHHHH T ss_pred CHHHHHHHHH T ss_conf 1599999885 No 4 >1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Probab=4.26 E-value=1.3e+02 Score=12.98 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999987799999 Q 537021.9.peg.2 7 ETIGTIQKMIKTKYVVS 23 (38) Q Consensus 7 etigtiqkmiktkyvvs 23 (38) +++|||.||. .||+. T Consensus 6 ~~~~~Idk~A--~yVak 20 (66) T 1x4p_A 6 SGVGTIDQLV--KRVIE 20 (66) T ss_dssp CSSHHHHHHH--HHHHH T ss_pred HHHHHHHHHH--HHHHH T ss_conf 0999999999--99995 No 5 >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Probab=3.79 E-value=1.4e+02 Score=12.75 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=12.8 Q ss_pred CCHHHHHHHHH----HHHHHHHHHH Q ss_conf 90479999999----9999877999 Q 537021.9.peg.2 1 MAHDLYETIGT----IQKMIKTKYV 21 (38) Q Consensus 1 mahdlyetigt----iqkmiktkyv 21 (38) |+-|.|+.+|. -+.-|+..|- T Consensus 1 m~kd~Y~vLgv~~~as~~eIk~ay~ 25 (77) T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYR 25 (77) T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHH T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHH T ss_conf 9997598859999959999999999 No 6 >1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A Probab=3.60 E-value=2.6e+02 Score=11.50 Aligned_cols=10 Identities=50% Similarity=0.717 Sum_probs=4.9 Q ss_pred HHHHHHHHHH Q ss_conf 9999999997 Q 537021.9.peg.2 19 KYVVSSLIKS 28 (38) Q Consensus 19 kyvvssliks 28 (38) +-|..|+||| T Consensus 4 rsVirSiIkS 13 (56) T 1oks_A 4 RSVIRSIIKS 13 (56) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8999999998 No 7 >2knr_A Uncharacterized protein ATC0905; methods development, structural genomics, protein northeast structural genomics consortium (NESG); NMR {Agrobacterium tumefaciens str} Probab=3.11 E-value=2.9e+02 Score=11.25 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 87799999999977533311 Q 537021.9.peg.2 16 IKTKYVVSSLIKSLNEVKTF 35 (38) Q Consensus 16 iktkyvvsslikslnevktf 35 (38) +||...||++|+-.+-.-.| T Consensus 6 Lks~lwV~AliRr~~~~g~~ 25 (121) T 2knr_A 6 LKSEMFVSALIRRVFAAGGF 25 (121) T ss_dssp CCHHHHHHHHHHHHHHTTCE T ss_pred EHHHHHHHHHHHHHHHCCCC T ss_conf 25899999999999768995 No 8 >2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A Probab=2.96 E-value=3e+02 Score=11.16 Aligned_cols=10 Identities=50% Similarity=0.514 Sum_probs=7.1 Q ss_pred HHHHHHHHHH Q ss_conf 9999999987 Q 537021.9.peg.2 8 TIGTIQKMIK 17 (38) Q Consensus 8 tigtiqkmik 17 (38) -|..||.||. T Consensus 7 likriqamip 16 (34) T 2dwf_A 7 LIKRIQAMIP 16 (34) T ss_dssp HHHHHHHHCT T ss_pred HHHHHHHHCC T ss_conf 9999998777 No 9 >3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A Probab=2.74 E-value=3.2e+02 Score=11.03 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999977533 Q 537021.9.peg.2 21 VVSSLIKSLNEV 32 (38) Q Consensus 21 vvsslikslnev 32 (38) |.||.|++|.|- T Consensus 285 VLSstIssL~ds 296 (303) T 3nft_A 285 VLSGAISTLTDT 296 (303) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHHH T ss_conf 999999999998 No 10 >2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} Probab=2.64 E-value=3.3e+02 Score=10.96 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7999999999998779999999 Q 537021.9.peg.2 4 DLYETIGTIQKMIKTKYVVSSL 25 (38) Q Consensus 4 dlyetigtiqkmiktkyvvssl 25 (38) |-.|.|...||. .||.+|.| T Consensus 12 ~~~e~i~~aqK~--aK~AiSAL 31 (53) T 2rkl_A 12 DRASKIEQIQKL--AKYAISAL 31 (53) T ss_dssp HHHHHHHHHHHH--HHHHHHHH T ss_pred CCHHHHHHHHHH--HHHHHHHC T ss_conf 859999999999--99999870 Done!