Query         537021.9.peg.33_1
Match_columns 100
No_of_seqs    109 out of 961
Neff          6.6 
Searched_HMMs 13730
Date          Sun May 22 14:22:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_33.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ygya3 d.58.18.1 (A:452-529)   99.9 1.4E-23   1E-27  142.8  10.6   77   21-97      1-77  (78)
  2 d1sc6a3 d.58.18.1 (A:327-410)   99.8 6.1E-21 4.5E-25  128.9   6.3   74   22-95     10-83  (84)
  3 d2fgca2 d.58.18.6 (A:27-104) A  98.4 7.4E-07 5.4E-11   54.6   8.8   73   23-95      3-77  (78)
  4 d2pc6a2 d.58.18.6 (A:1-77) Ace  98.4 3.4E-07 2.5E-11   56.4   7.1   72   24-95      3-76  (77)
  5 d2f1fa1 d.58.18.6 (A:2-77) Ace  98.4 6.7E-07 4.9E-11   54.9   8.2   72   24-95      2-75  (76)
  6 d1y7pa2 d.58.18.12 (A:2-78) Hy  98.4 9.7E-07   7E-11   54.0   8.9   70   25-94      3-75  (77)
  7 d2f06a1 d.58.18.11 (A:71-141)   98.2 4.5E-06 3.3E-10   50.5   8.2   57   26-86      2-58  (71)
  8 d1zpva1 d.58.18.7 (A:1-83) UPF  97.9 2.4E-05 1.8E-09   46.6   8.1   62   24-87      3-67  (83)
  9 d2f06a2 d.58.18.11 (A:1-70) Hy  97.8 6.7E-05 4.9E-09   44.3   9.1   63   25-91      5-67  (70)
 10 d1u8sa1 d.58.18.5 (A:2-87) put  97.7 1.6E-05 1.2E-09   47.5   4.3   50   23-74      5-54  (86)
 11 d1u8sa2 d.58.18.5 (A:88-180) p  97.6 0.00018 1.3E-08   42.1   8.5   62   25-86      8-78  (93)
 12 d2qmwa2 d.58.18.3 (A:185-264)   97.6 0.00018 1.3E-08   42.0   8.4   70   25-95      4-76  (80)
 13 d1phza1 d.58.18.3 (A:19-115) P  96.5  0.0025 1.8E-07   36.1   5.8   64   23-86     16-80  (97)
 14 d2cdqa2 d.58.18.10 (A:329-419)  91.6   0.059 4.3E-06   28.8   2.9   62   31-95     24-89  (91)
 15 d2hmfa2 d.58.18.10 (A:404-470)  91.1    0.14   1E-05   26.7   4.5   50   31-84     12-61  (67)
 16 d2hmfa3 d.58.18.10 (A:304-403)  88.9    0.16 1.2E-05   26.5   3.3   51   30-84     25-75  (100)
 17 d2j0wa2 d.58.18.10 (A:295-385)  85.4    0.15 1.1E-05   26.6   1.6   58   30-90     24-87  (91)
 18 d2cdqa3 d.58.18.10 (A:420-494)  80.7    0.54 3.9E-05   23.7   2.8   50   30-83     10-59  (75)
 19 d1zhva2 d.58.18.8 (A:62-127) H  48.6     5.6  0.0004   18.4   2.6   49   31-86     13-61  (66)
 20 d2dfaa1 c.6.2.5 (A:1-250) Hypo  48.5     8.8 0.00064   17.3   3.6   45    7-54    203-250 (250)
 21 d2eyqa5 c.37.1.19 (A:779-989)   47.5     8.7 0.00063   17.4   3.4   58   21-88    100-157 (211)
 22 d1zvpa2 d.58.18.9 (A:68-131) H  45.4     6.7 0.00049   17.9   2.6   49   31-86     14-62  (64)
 23 d1v6ta_ c.6.2.5 (A:) Hypotheti  45.0     5.9 0.00043   18.2   2.3   45    7-54    203-250 (254)
 24 d1tdja2 d.58.18.2 (A:336-423)   43.5      11 0.00079   16.8   5.1   59   25-86      5-67  (88)
 25 d1i1ga2 d.58.4.2 (A:62-141) Lp  42.6      11 0.00078   16.9   3.3   58   33-94     12-72  (80)
 26 d2j0wa3 d.58.18.10 (A:386-449)  36.7       5 0.00036   18.6   0.8   48   31-84     12-59  (64)
 27 d1qlma_ d.147.1.1 (A:) Metheny  34.0      16  0.0011   16.0   3.3   30   60-89    130-159 (316)
 28 d2cg4a2 d.58.4.2 (A:67-152) Re  32.3      17  0.0012   15.9   5.0   63   28-94      7-72  (86)
 29 d2nzca1 d.58.18.14 (A:2-81) Hy  26.9      21  0.0015   15.3   5.8   62   28-90      9-73  (80)
 30 d1xw8a_ c.6.2.5 (A:) Hypotheti  26.7      14   0.001   16.2   1.8   45    8-55    199-246 (247)
 31 d2cyya2 d.58.4.2 (A:65-150) Pu  24.7      23  0.0017   15.1   4.5   58   33-94     12-71  (86)
 32 d1b64a_ d.58.12.1 (A:) Guanine  24.2      24  0.0017   15.1   2.8   52   47-98     34-89  (91)
 33 d3cjsb1 d.47.1.1 (B:1-70) Ribo  24.2      13 0.00095   16.4   1.2   16   39-54     22-37  (70)
 34 d1uv7a_ d.67.4.1 (A:) General   23.7      24  0.0018   15.0   2.7   45   37-87      4-48  (80)
 35 d1f60b_ d.58.12.1 (B:) Guanine  23.0      25  0.0018   14.9   5.3   30   69-98     57-88  (90)
 36 d1gh8a_ d.58.12.1 (A:) aEF-1be  20.5      28  0.0021   14.6   3.9   62   36-98     22-86  (89)

No 1  
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.90  E-value=1.4e-23  Score=142.80  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=75.3

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             79839999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF   97 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~   97 (100)
                      .+||+|++.|+|+||+||+|+++|++++|||++|+++|+++++.|+|++++|++++++++++|+++|+|.+||.+++
T Consensus         1 AeG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~~~V~~v~~i~l   77 (78)
T d1ygya3           1 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDL   77 (78)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEEC
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEEC
T ss_conf             98169999967969979999999986496932413300578976899999377766999999972779079999966


No 2  
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=99.82  E-value=6.1e-21  Score=128.87  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             98399999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3   22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .+|+|++.|+|+|||||+|+++|+++|+||++|+++++.++++|+|.+++|++++++++++|+++|+|.++|.+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf             88389999679699899999999973999899624457877489999978887779999999779987999973


No 3  
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,  IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=98.41  E-value=7.4e-07  Score=54.64  Aligned_cols=73  Identities=15%  Similarity=0.277  Sum_probs=62.3

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             8399999828786688999899736996322774214789818999994--788998999998649882999999
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .|+|-+.=+|+||++++++++|+..|+||.++.++.....+..-|.+.+  |+..-+.+...|.++.+|.+|.-+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dl   77 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI   77 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC
T ss_pred             EEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             699999996777699999999861785547889821379984899999984989999999998578587999958


No 4  
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,  IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=98.41  E-value=3.4e-07  Score=56.38  Aligned_cols=72  Identities=13%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             399999828786688999899736996322774214789818999994--788998999998649882999999
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      |+|.+.-+|+||++++|+++|+..|+||.++.++.....+..-|.+.+  |+..-+.+...|.++.+|.+|.-+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dl   76 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDL   76 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             79999997785499999999860685468899742589983899999977888999999998578687999979


No 5  
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,  IlvH {Escherichia coli [TaxId: 562]}
Probab=98.40  E-value=6.7e-07  Score=54.86  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             39999982878668899989973699632277421478981899999478--8998999998649882999999
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      |+|.+.=+|+||++++++.+|+..++||.++.++.....+..-|.+.+.+  ..-+.+...|.++.+|.+|+-+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             79999997777599999999872685567889704579981299999978888999999998578787999968


No 6  
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.39  E-value=9.7e-07  Score=54.01  Aligned_cols=70  Identities=16%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf             99999828786688999899736996322774214789-818999994--78899899999864988299999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST-EHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQ   94 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g-~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~   94 (100)
                      -|-+.-.|+||+++.|+++++++++||.+.+......| ....+.+++  .+.--+.++++|+++|+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf             5999995577769999999987699968888531678817999999997586449999999876999268885


No 7  
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=98.16  E-value=4.5e-06  Score=50.48  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=47.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf             9999828786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3   26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~   86 (100)
                      |-+.-.|+||.++++++.|++++|||.+|+....  ++.|++++.+|.  |+...+.|++-
T Consensus         2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~--~~~~~~vl~vdd--~~~a~~~L~~~   58 (71)
T d2f06a1           2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSN--MDKCIEVLKEK   58 (71)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE--TTEEEEEEEESC--HHHHHHHHHHT
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC--CCCEEEEEEECC--HHHHHHHHHHC
T ss_conf             8999569824899999999878987899998847--994799999799--99999999987


No 8  
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=97.92  E-value=2.4e-05  Score=46.63  Aligned_cols=62  Identities=21%  Similarity=0.195  Sum_probs=44.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCC-HHHHHHHHCCC
Q ss_conf             399999828786688999899736996322774214789818999994--78899-89999986498
Q 537021.9.peg.3   24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSIL-NSVLEKLSVNV   87 (100)
Q Consensus        24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~-~~vl~~i~~~~   87 (100)
                      ..|.+.-.|+||+++.|++.|+++|+||..++-...  ++...+.+.+  +...+ +++.+++.++.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~la   67 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAFG   67 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEE--CCEEEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             999999589887999999999978983999785983--79899999999845899999999999999


No 9  
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=97.83  E-value=6.7e-05  Score=44.29  Aligned_cols=63  Identities=14%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEE
Q ss_conf             9999982878668899989973699632277421478981899999478899899999864988299
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRF   91 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~   91 (100)
                      .|-+.-+|+||.+++++.+|+++||||.++.++...  +.++.-+-+|  -|++..+.|++.--...
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~--~~~i~Riiv~--~~e~a~~~L~~~g~~v~   67 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIVS--DPDKAYKALKDNHFAVN   67 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEES--CHHHHHHHHHHTTCCEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECC--CCCEEEEEEC--CHHHHHHHHHHCCCEEE
T ss_conf             999998378767999999998789778999976258--8988999987--84999999998798894


No 10 
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=97.70  E-value=1.6e-05  Score=47.55  Aligned_cols=50  Identities=26%  Similarity=0.287  Sum_probs=38.5

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC
Q ss_conf             8399999828786688999899736996322774214789818999994788
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS   74 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~   74 (100)
                      ...+.+.-.|+||+++.+++.|+++|+||...+..+.  ++...+++.++.+
T Consensus         5 ~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~   54 (86)
T d1u8sa1           5 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGS   54 (86)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEEC
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEE--CCEEEEEEEEECC
T ss_conf             8999999389871999999999987976999674997--8915999999868


No 11 
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=97.61  E-value=0.00018  Score=42.06  Aligned_cols=62  Identities=11%  Similarity=0.120  Sum_probs=39.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCEEEEEEEE--CCCCC-HHHHHHHHCC
Q ss_conf             9999982878668899989973699632277421478------9818999994--78899-8999998649
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS------TEHAISFLCI--DGSIL-NSVLEKLSVN   86 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~------g~~A~~ii~v--D~~i~-~~vl~~i~~~   86 (100)
                      .+.+.-.|+||+++.|+++|+++++||..++......      .....|-+.+  ....+ +++.+++.++
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l   78 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDAL   78 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             99999799899899999999986998053321232456786667658999999758643589999999999


No 12 
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=97.60  E-value=0.00018  Score=42.03  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHHHHHHHHCCC-CEEEEEEE
Q ss_conf             99999828786688999899736996322774214789--8189999947889989999986498-82999999
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNSVLEKLSVNV-TIRFVKQF   95 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~vl~~i~~~~-~v~~vr~i   95 (100)
                      ++++...|+||.++++-+.++++|||+...+- |..++  +.-.-.+++++...+.+.+.++++. ....+|.+
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeS-RP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kvL   76 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIES-RPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEMI   76 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEE-EECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             99986799887899999999987987899995-64289985699999985488689999999999835968999


No 13 
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=96.53  E-value=0.0025  Score=36.06  Aligned_cols=64  Identities=14%  Similarity=0.126  Sum_probs=45.4

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf             839999982878668899989973699632277421478-9818999994788998999998649
Q 537021.9.peg.3   23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~~~vl~~i~~~   86 (100)
                      ...|++.-.|+||.++.+-+.|++++||+....-.-... .+.-.-.+++++...+.+...|..+
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L   80 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSL   80 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             08999996997878999999999879878999813168999449999984468849999999999


No 14 
>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=91.55  E-value=0.059  Score=28.78  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC----CCHHHHHHHHCCCCEEEEEEE
Q ss_conf             28786688999899736996322774214789818999994788----998999998649882999999
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS----ILNSVLEKLSVNVTIRFVKQF   95 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~----i~~~vl~~i~~~~~v~~vr~i   95 (100)
                      .++||+.+++-+.|++++|||.....   +.....+++=+-|..    ...++-+.++.++.+-.|..+
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~---Se~~is~~v~~~~~~~a~~~~~~~~~~~~el~~ia~VsVv   89 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVAT---SEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLL   89 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEE---ETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEE---CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             88723999999999985992799980---6876999983668899999999999999998477269995


No 15 
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=91.11  E-value=0.14  Score=26.74  Aligned_cols=50  Identities=32%  Similarity=0.331  Sum_probs=33.4

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      +++||+.+++-+.|++++|||.-..-+   ..+..++++- ++.--+..++.|.
T Consensus        12 ~~~~gi~arif~~L~~~~InV~mIsq~---~Se~~Is~~V-~~~d~~~Av~~Lh   61 (67)
T d2hmfa2          12 RGAKGIAGKIFTAVSESGANIKMIAQG---SSEVNISFVI-DEKDLLNCVRKLH   61 (67)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCCCEEEES---SCSSEEEEEE-EGGGHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCHHHEEEC---CCCCEEEEEE-EHHHHHHHHHHHH
T ss_conf             888239999999999869986774534---8602499998-0899999999999


No 16 
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=88.90  E-value=0.16  Score=26.51  Aligned_cols=51  Identities=25%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             8287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      ..++||+.+++-+.|++++|||.-..-+   ..+..+. +.++..--+.+++.|.
T Consensus        25 m~~~~Gi~arif~~La~~~InV~mIsQ~---~Se~~Is-f~V~~~d~~~a~~~L~   75 (100)
T d2hmfa3          25 MVGVSGTAARIFKALGEEEVNVILISQG---SSETNIS-LVVSEEDVDKALKALK   75 (100)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCCEEEEEEC---CTTCCEE-EEECSTTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCHHHEECC---CCCCEEE-EEEEHHHHHHHHHHHH
T ss_conf             7898546899999998859998893326---7764599-9984899999999999


No 17 
>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=85.43  E-value=0.15  Score=26.60  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC------CHHHHHHHHCCCCEE
Q ss_conf             8287866889998997369963227742147898189999947889------989999986498829
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------LNSVLEKLSVNVTIR   90 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i------~~~vl~~i~~~~~v~   90 (100)
                      -..+||+.+++-+.|++++|||.-+..   +.....+.+=+-|...      .+.++++|+++-.|.
T Consensus        24 m~~~~G~~~~if~~L~~~~Inv~mis~---Se~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~V~   87 (91)
T d2j0wa2          24 MLHSRGFLAEVFGILARHNISVDLITT---SEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVE   87 (91)
T ss_dssp             CSCHHHHHHHHTTTTTTTTCCCSEEEE---ETTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEE
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEEC---CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             777767999999999985992899971---6748999984468799999998999999985459389


No 18 
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=80.66  E-value=0.54  Score=23.71  Aligned_cols=50  Identities=18%  Similarity=0.241  Sum_probs=32.5

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3   30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL   83 (100)
Q Consensus        30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i   83 (100)
                      ..++||+.+++-+.|++++|||....-+   ..+..++++ +++.-.++++..|
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg---~se~~Is~v-V~~~d~~~Av~~L   59 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQG---ASKVNISFI-VNEAEAEGCVQAL   59 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEEC---TTCSEEEEE-EEHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECC---CCCEEEEEE-EEHHHHHHHHHHH
T ss_conf             9987139999999999869946988727---641679999-9089999999999


No 19 
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=48.59  E-value=5.6  Score=18.37  Aligned_cols=49  Identities=22%  Similarity=0.114  Sum_probs=30.0

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf             28786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~   86 (100)
                      -|.+|+++.+++.|++++|-+-......   .+  +..+..  .--+++++.+++.
T Consensus        13 l~~vGi~a~i~~~La~a~Is~~~vSty~---~D--~ilVp~--~~~~~A~~~L~~~   61 (66)
T d1zhva2          13 FDETGIVLSVISPLSTNGIGIFVVSTFD---GD--HLLVRS--NDLEKTADLLANA   61 (66)
T ss_dssp             CSSCCHHHHHHHHHHTTTCCCEEEECSS---CE--EEEEEG--GGHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEEEE---CC--EEEEEH--HHHHHHHHHHHHC
T ss_conf             1467289999999987799869987441---63--799878--7899999999986


No 20 
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]}
Probab=48.51  E-value=8.8  Score=17.32  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=33.2

Q ss_pred             EEEEEECCEEEEEECCCCEEEEEECCCCCHHH---HHHHHHHHCCCCEEEE
Q ss_conf             78999799899765798399999828786688---9998997369963227
Q 537021.9.peg.3    7 PRFIKIQEINFDVDIGRLMICIVNADILGIVV---FVGNILGEYGINIAHF   54 (100)
Q Consensus         7 ~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~---~v~~~L~~~~INIa~m   54 (100)
                      -++..++|-.+.+..+  +|++ |-|.|+.+.   .+-..|-++||.|..+
T Consensus       203 ~~V~t~~G~~i~i~ad--TICV-HgDtp~Av~~ak~ir~~L~~~gi~I~~f  250 (250)
T d2dfaa1         203 GKVEALDGGEVAVRAD--TLCI-HGDNPNAPEVARAVREALEQAGVEVRAF  250 (250)
T ss_dssp             SEEEBTTSSEEECCCS--EEEE-C---CCHHHHHHHHHHHHHTTTCEECCC
T ss_pred             CCEEECCCCEEECCCC--EEEE-CCCCHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf             9879068988525689--8997-8999779999999999999886968169


No 21 
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=47.49  E-value=8.7  Score=17.36  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=43.6

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf             79839999982878668899989973699632277421478981899999478899899999864988
Q 537021.9.peg.3   21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT   88 (100)
Q Consensus        21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~   88 (100)
                      |.-+++++.|.|+-| ++++-++-|.         ++|....++++.+..-.+.+++...+.|+.+..
T Consensus       100 pnA~~iiI~~a~rfG-LaQLhQLRGR---------VGR~~~~s~c~l~~~~~~~~~~~a~~RL~~l~~  157 (211)
T d2eyqa5         100 PTANTIIIERADHFG-LAQLHQLRGR---------VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS  157 (211)
T ss_dssp             TTEEEEEETTTTSSC-HHHHHHHHTT---------CCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCHHCC-CCCCCCCCCE---------EEECCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             987699871300033-1122230233---------553676654899856876777328899899985


No 22 
>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=45.36  E-value=6.7  Score=17.94  Aligned_cols=49  Identities=18%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf             28786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN   86 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~   86 (100)
                      -|..|+++.|++.|+++||-+--..-..     .-+.++.  ..--++.++.|+++
T Consensus        14 Le~VGl~A~is~~La~~~Is~nvis~~~-----hDhifVp--~~~~~~Al~~L~~l   62 (64)
T d1zvpa2          14 LEAVGLTAAFATKLAEHGISANVIAGYY-----HDHIFVQ--KEKAQQALQALGEF   62 (64)
T ss_dssp             -CCSCHHHHHHHHHHHTTCCCEEEECSS-----CEEEEEE--GGGHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEC-----CCEEEEC--HHHHHHHHHHHHHH
T ss_conf             6887689999999997799737877211-----5369873--55699999999996


No 23 
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=45.05  E-value=5.9  Score=18.22  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=34.7

Q ss_pred             EEEEEECCEEEEEECCCCEEEEEECCCCCHHHH---HHHHHHHCCCCEEEE
Q ss_conf             789997998997657983999998287866889---998997369963227
Q 537021.9.peg.3    7 PRFIKIQEINFDVDIGRLMICIVNADILGIVVF---VGNILGEYGINIAHF   54 (100)
Q Consensus         7 ~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~---v~~~L~~~~INIa~m   54 (100)
                      -++..++|-.+.+..+  +|++ |-|.|+.+..   +-+.|-++||-|..+
T Consensus       203 g~V~ti~G~~I~i~ad--TICV-HGDtp~Av~~a~~ir~~L~~~gi~I~pl  250 (254)
T d1v6ta_         203 GGIRAINGEWVDLKVD--TICV-HGDNPKAVEITSYIRKVLEEEGVKIVPM  250 (254)
T ss_dssp             SEEECTTSCEEECCCS--EEEC-CCSSHHHHHHHHHHHHHHHHTTCEECCG
T ss_pred             CCEEECCCCEEECCCC--EEEE-CCCCHHHHHHHHHHHHHHHHCCCEEEEH
T ss_conf             9889158988743679--8997-9999789999999999999889999656


No 24 
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.46  E-value=11  Score=16.84  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=42.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf             9999982878668899989973699632277421478981899999478899----8999998649
Q 537021.9.peg.3   25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL----NSVLEKLSVN   86 (100)
Q Consensus        25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~----~~vl~~i~~~   86 (100)
                      ++-+.-..+||.+.+....|+.  .||..++- |...+..|-..+.+.-+-.    +++++.+++.
T Consensus         5 l~~v~iPErpGaf~~F~~~lg~--~nITeF~Y-R~~~~~~a~VlvGi~~~~~~~e~~~l~~~L~~~   67 (88)
T d1tdja2           5 LLAVTIPEEKGSFLKFCQLLGG--RSVTEFNY-RFADAKNACIFVGVRLSRGLEERKEILQMLNDG   67 (88)
T ss_dssp             EEEEECCBSSSCSHHHHHTTSS--SEEEEEEE-ECCCSSBCEEEEEEECSSTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHCCC--CCEEEEEE-ECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf             9999768896599999985275--72679998-704898718999998668611599999999877


No 25 
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=42.62  E-value=11  Score=16.86  Aligned_cols=58  Identities=16%  Similarity=0.045  Sum_probs=35.0

Q ss_pred             CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC--HHHH-HHHHCCCCEEEEEE
Q ss_conf             78668899989973699632277421478981899999478899--8999-99864988299999
Q 537021.9.peg.3   33 ILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL--NSVL-EKLSVNVTIRFVKQ   94 (100)
Q Consensus        33 ~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~--~~vl-~~i~~~~~v~~vr~   94 (100)
                      .|+-...+...|++. =++...+   ...|..-+++.-.-....  .+++ ++|.++|||.+++.
T Consensus        12 ~~~~~~~v~~~l~~~-peV~~~~---~vtG~~D~~~~v~~~d~~~l~~~l~~~i~~~~gV~~~~t   72 (80)
T d1i1ga2          12 KPEKLFEVAEKLKEY-DFVKELY---LSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCP   72 (80)
T ss_dssp             CGGGHHHHHHHHHHS-TTEEEEC---CCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEE
T ss_pred             CCCCHHHHHHHHHCC-CCEEEEE---EECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             717599999998769-9986899---897999899999979999999999866415999779999


No 26 
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=36.66  E-value=5  Score=18.62  Aligned_cols=48  Identities=23%  Similarity=0.418  Sum_probs=28.5

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf             287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3   31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS   84 (100)
Q Consensus        31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~   84 (100)
                      ...||+.+++-+.|++.+|++-.+.     ..+..+.++ +++.-.+..+..|.
T Consensus        12 ~~~~gi~arif~~L~~~nI~~i~~~-----~Se~~is~v-V~~~d~~~Av~aLh   59 (64)
T d2j0wa3          12 SKACGVGKEVFGVLEPFNIRMICYG-----ASSHNLCFL-VPGEDAEQVVQKLH   59 (64)
T ss_dssp             TTSSSHHHHHHSSCTTSCCCEEEES-----SCTTEEEEE-EEGGGHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEEEE-----CCCCEEEEE-ECHHHHHHHHHHHH
T ss_conf             5483499999999865797699997-----570279999-83899999999999


No 27 
>d1qlma_ d.147.1.1 (A:) Methenyltetrahydromethanopterin cyclohydrolase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=34.02  E-value=16  Score=16.01  Aligned_cols=30  Identities=17%  Similarity=0.081  Sum_probs=24.8

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHCCCCE
Q ss_conf             789818999994788998999998649882
Q 537021.9.peg.3   60 QSTEHAISFLCIDGSILNSVLEKLSVNVTI   89 (100)
Q Consensus        60 ~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v   89 (100)
                      .+...|+.++|.|+.+|+++.++|.+--+|
T Consensus       130 D~~~~avlvlE~~~lP~~~v~~~iA~~cgv  159 (316)
T d1qlma_         130 DDADVAILCLESSELPDEDVAEHVADECGV  159 (316)
T ss_dssp             CCCSCEEEEEECSSCCCHHHHHHHHHHHTS
T ss_pred             ECCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             156716999964889899999999998099


No 28 
>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=32.33  E-value=17  Score=15.86  Aligned_cols=63  Identities=11%  Similarity=-0.025  Sum_probs=29.0

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE-EEE-CCCCCHHHH-HHHHCCCCEEEEEE
Q ss_conf             99828786688999899736996322774214789818999-994-788998999-99864988299999
Q 537021.9.peg.3   28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF-LCI-DGSILNSVL-EKLSVNVTIRFVKQ   94 (100)
Q Consensus        28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i-i~v-D~~i~~~vl-~~i~~~~~v~~vr~   94 (100)
                      ..+-+.|.-...+...|.+.- ++...+.  - .|+.-+++ +.. |.+-=.+++ ++|.++|||.+.+.
T Consensus         7 ~I~~~~~~~~~~~~~~l~~~p-eV~~~~~--v-tG~~D~i~~v~~~d~~~l~~~i~~~i~~~~gV~~t~T   72 (86)
T d2cg4a2           7 GIILKSAKDYPSALAKLESLD-EVTEAYY--T-TGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTET   72 (86)
T ss_dssp             EEEESSGGGHHHHHHHHHTCT-TEEEEEE--E-SSSCSEEEEEEESCHHHHHHHHHHTTTTSTTEEEEEE
T ss_pred             EEEECCCCCHHHHHHHHHCCC-CEEEEEE--E-CCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             999889878999999997699-9779999--6-4986599999989999999999998535999807999


No 29 
>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}
Probab=26.85  E-value=21  Score=15.33  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEE-EEEEECCCCCCEEEEEEEECCCCC--HHHHHHHHCCCCEE
Q ss_conf             9982878668899989973699632-277421478981899999478899--89999986498829
Q 537021.9.peg.3   28 IVNADILGIVVFVGNILGEYGINIA-HFHLGRSQSTEHAISFLCIDGSIL--NSVLEKLSVNVTIR   90 (100)
Q Consensus        28 i~~~D~PG~I~~v~~~L~~~~INIa-~m~l~r~~~g~~A~~ii~vD~~i~--~~vl~~i~~~~~v~   90 (100)
                      +.-+|+--...+|..+|.+++..|- .|-+.-.. .+.++..+.+|++-+  .++-.+|.++|||.
T Consensus         9 Iive~r~~~a~kVn~iL~~yg~~I~gRmGip~~~-~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~   73 (80)
T d2nzca1           9 IVVEDREKAYRQVNELLHNFSEDILLRVGYPVRE-ENMAIIFLVLKTDNDTIGALSGKLGQISGVR   73 (80)
T ss_dssp             EEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGG-GTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             EEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCC-CCCEEEEEEEECCHHHHHHHHHHHCCCCCEE
T ss_conf             9996827768999999987788789854687054-6925999999888879999887636999889


No 30 
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]}
Probab=26.66  E-value=14  Score=16.21  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             EEEEECCEEEEEECCCCEEEEEECCCCCHHH---HHHHHHHHCCCCEEEEE
Q ss_conf             8999799899765798399999828786688---99989973699632277
Q 537021.9.peg.3    8 RFIKIQEINFDVDIGRLMICIVNADILGIVV---FVGNILGEYGINIAHFH   55 (100)
Q Consensus         8 riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~---~v~~~L~~~~INIa~m~   55 (100)
                      ++..++|-.+.+..  .+|++ |-|.|+.+.   .+-+.|.++||-|..+.
T Consensus       199 ~V~ti~G~~I~l~a--dTICV-HGDtp~Av~~ak~Ir~~L~~~gI~I~~~~  246 (247)
T d1xw8a_         199 RVKSITGEWATVAA--QTVCL-HGDGEHALAFARRLRSAFAEKGIVVAALE  246 (247)
T ss_dssp             EEECTTSCEEECCC--CEEEC-CCCC-CCHHHHHHHHHHC----CCBCCCC
T ss_pred             CEECCCCCEECCCC--CEEEE-CCCCHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf             87867899810788--97987-99997899999999999998899895188


No 31 
>d2cyya2 d.58.4.2 (A:65-150) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.66  E-value=23  Score=15.11  Aligned_cols=58  Identities=14%  Similarity=0.106  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf             786688999899736996322774214789818999994--78899899999864988299999
Q 537021.9.peg.3   33 ILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQ   94 (100)
Q Consensus        33 ~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~   94 (100)
                      .|+-...+...|.+.. ++...+   .-.|..-+++.-.  |.+-=++++++|.++|||.+++.
T Consensus        12 ~~~~~~~v~~~l~~~p-eV~~~~---~~tG~~D~~~~v~~~~~~~l~~~~~~l~~~~gV~~~~T   71 (86)
T d2cyya2          12 KAGKYSEVASNLAKYP-EIVEVY---ETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHT   71 (86)
T ss_dssp             CTTCHHHHHHHHHTCT-TEEEEE---ECSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEE
T ss_pred             CCCCHHHHHHHHHCCC-CEEEEE---EECCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             7899999999997797-867999---97489989999998999999999999847999717999


No 32 
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.24  E-value=24  Score=15.06  Aligned_cols=52  Identities=12%  Similarity=0.047  Sum_probs=33.8

Q ss_pred             CCCCEEEEEEECCCCCCEEEEEE--EECCC-CCHHHHHHHHCCCC-EEEEEEEEEE
Q ss_conf             69963227742147898189999--94788-99899999864988-2999999974
Q 537021.9.peg.3   47 YGINIAHFHLGRSQSTEHAISFL--CIDGS-ILNSVLEKLSVNVT-IRFVKQFEFN   98 (100)
Q Consensus        47 ~~INIa~m~l~r~~~g~~A~~ii--~vD~~-i~~~vl~~i~~~~~-v~~vr~i~~~   98 (100)
                      .|..+.....---.-|=.++-+.  --|.. -++++.++|.++++ |.++-...||
T Consensus        34 ~gl~wg~~k~~PIaFGlkkL~i~~vveDd~~~~D~lee~i~~~Ed~VqsvdI~s~n   89 (91)
T d1b64a_          34 DGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFN   89 (91)
T ss_dssp             TTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHHHTTCTTTEEEEEESCCB
T ss_pred             CCCCEEEEEEEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf             65737127899887444639999999948758699999988622930689999764


No 33 
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.22  E-value=13  Score=16.42  Aligned_cols=16  Identities=50%  Similarity=0.727  Sum_probs=14.0

Q ss_pred             HHHHHHHHCCCCEEEE
Q ss_conf             9998997369963227
Q 537021.9.peg.3   39 FVGNILGEYGINIAHF   54 (100)
Q Consensus        39 ~v~~~L~~~~INIa~m   54 (100)
                      .+|..||.+||||..+
T Consensus        22 PvGpaLG~~GiNi~~F   37 (70)
T d3cjsb1          22 PVGPALGQHGANIMEF   37 (70)
T ss_dssp             THHHHHHTTTCCHHHH
T ss_pred             CCCCHHHHCCCCHHHH
T ss_conf             9764254528679999


No 34 
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=23.71  E-value=24  Score=15.00  Aligned_cols=45  Identities=9%  Similarity=0.080  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf             889998997369963227742147898189999947889989999986498
Q 537021.9.peg.3   37 VVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV   87 (100)
Q Consensus        37 I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~   87 (100)
                      -+.|++...++++.|..|+-    .|+ . +-+-+|...-++++..|..+.
T Consensus         4 ~~~v~~Sa~~~gl~i~R~QP----~gd-~-vqV~ld~v~F~~ll~WL~~L~   48 (80)
T d1uv7a_           4 NQVITNSTRQFNIELIRVQP----RGE-M-MQVWIQPLPFSQLVSWIAYLQ   48 (80)
T ss_dssp             HHHHHHHHHHHTCCEEEEEE----CSS-E-EEEEECCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECC----CCC-E-EEEEECCCCHHHHHHHHHHHH
T ss_conf             89999999877983898557----998-7-999986879899999999997


No 35 
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.03  E-value=25  Score=14.93  Aligned_cols=30  Identities=3%  Similarity=0.130  Sum_probs=23.8

Q ss_pred             EEECCCCC-HHHHHHHHCCCC-EEEEEEEEEE
Q ss_conf             99478899-899999864988-2999999974
Q 537021.9.peg.3   69 LCIDGSIL-NSVLEKLSVNVT-IRFVKQFEFN   98 (100)
Q Consensus        69 i~vD~~i~-~~vl~~i~~~~~-v~~vr~i~~~   98 (100)
                      +--|...+ +++.++|.++++ |++|-...||
T Consensus        57 vveDd~~~~D~lee~i~~~Ed~VqSvdI~~~~   88 (90)
T d1f60b_          57 VVEDDKVSLDDLQQSIEEDEDHVQSTDIAAMQ   88 (90)
T ss_dssp             EEETTTCCHHHHHHHHHTCTTTEEEEEEEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf             99928748799999877422931689999876


No 36 
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.51  E-value=28  Score=14.64  Aligned_cols=62  Identities=10%  Similarity=0.033  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--C-CCCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             688999899736996322774214789818999994--7-88998999998649882999999974
Q 537021.9.peg.3   36 IVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--D-GSILNSVLEKLSVNVTIRFVKQFEFN   98 (100)
Q Consensus        36 ~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D-~~i~~~vl~~i~~~~~v~~vr~i~~~   98 (100)
                      +-..+-+++ ..|..+.....---.-|=.++-+..+  | .--.+++-+.|+++++|.++-..+++
T Consensus        22 l~~~ik~~~-~~g~~~~~~~~~PiaFGLk~L~v~~vv~D~~g~~D~lee~i~~ie~Vqsvev~~~~   86 (89)
T d1gh8a_          22 LKKEIQERI-PEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGIEGVSNIEVTDVR   86 (89)
T ss_dssp             HHHHHHHHS-CTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHHHTTSCSSEEEEEEEEE
T ss_pred             HHHHHHHHC-CCCCEEEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf             999998646-58767988898878726174999999981883768999998455897589868756


Done!