Query 537021.9.peg.33_1 Match_columns 100 No_of_seqs 109 out of 961 Neff 6.6 Searched_HMMs 13730 Date Sun May 22 14:22:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_33.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ygya3 d.58.18.1 (A:452-529) 99.9 1.4E-23 1E-27 142.8 10.6 77 21-97 1-77 (78) 2 d1sc6a3 d.58.18.1 (A:327-410) 99.8 6.1E-21 4.5E-25 128.9 6.3 74 22-95 10-83 (84) 3 d2fgca2 d.58.18.6 (A:27-104) A 98.4 7.4E-07 5.4E-11 54.6 8.8 73 23-95 3-77 (78) 4 d2pc6a2 d.58.18.6 (A:1-77) Ace 98.4 3.4E-07 2.5E-11 56.4 7.1 72 24-95 3-76 (77) 5 d2f1fa1 d.58.18.6 (A:2-77) Ace 98.4 6.7E-07 4.9E-11 54.9 8.2 72 24-95 2-75 (76) 6 d1y7pa2 d.58.18.12 (A:2-78) Hy 98.4 9.7E-07 7E-11 54.0 8.9 70 25-94 3-75 (77) 7 d2f06a1 d.58.18.11 (A:71-141) 98.2 4.5E-06 3.3E-10 50.5 8.2 57 26-86 2-58 (71) 8 d1zpva1 d.58.18.7 (A:1-83) UPF 97.9 2.4E-05 1.8E-09 46.6 8.1 62 24-87 3-67 (83) 9 d2f06a2 d.58.18.11 (A:1-70) Hy 97.8 6.7E-05 4.9E-09 44.3 9.1 63 25-91 5-67 (70) 10 d1u8sa1 d.58.18.5 (A:2-87) put 97.7 1.6E-05 1.2E-09 47.5 4.3 50 23-74 5-54 (86) 11 d1u8sa2 d.58.18.5 (A:88-180) p 97.6 0.00018 1.3E-08 42.1 8.5 62 25-86 8-78 (93) 12 d2qmwa2 d.58.18.3 (A:185-264) 97.6 0.00018 1.3E-08 42.0 8.4 70 25-95 4-76 (80) 13 d1phza1 d.58.18.3 (A:19-115) P 96.5 0.0025 1.8E-07 36.1 5.8 64 23-86 16-80 (97) 14 d2cdqa2 d.58.18.10 (A:329-419) 91.6 0.059 4.3E-06 28.8 2.9 62 31-95 24-89 (91) 15 d2hmfa2 d.58.18.10 (A:404-470) 91.1 0.14 1E-05 26.7 4.5 50 31-84 12-61 (67) 16 d2hmfa3 d.58.18.10 (A:304-403) 88.9 0.16 1.2E-05 26.5 3.3 51 30-84 25-75 (100) 17 d2j0wa2 d.58.18.10 (A:295-385) 85.4 0.15 1.1E-05 26.6 1.6 58 30-90 24-87 (91) 18 d2cdqa3 d.58.18.10 (A:420-494) 80.7 0.54 3.9E-05 23.7 2.8 50 30-83 10-59 (75) 19 d1zhva2 d.58.18.8 (A:62-127) H 48.6 5.6 0.0004 18.4 2.6 49 31-86 13-61 (66) 20 d2dfaa1 c.6.2.5 (A:1-250) Hypo 48.5 8.8 0.00064 17.3 3.6 45 7-54 203-250 (250) 21 d2eyqa5 c.37.1.19 (A:779-989) 47.5 8.7 0.00063 17.4 3.4 58 21-88 100-157 (211) 22 d1zvpa2 d.58.18.9 (A:68-131) H 45.4 6.7 0.00049 17.9 2.6 49 31-86 14-62 (64) 23 d1v6ta_ c.6.2.5 (A:) Hypotheti 45.0 5.9 0.00043 18.2 2.3 45 7-54 203-250 (254) 24 d1tdja2 d.58.18.2 (A:336-423) 43.5 11 0.00079 16.8 5.1 59 25-86 5-67 (88) 25 d1i1ga2 d.58.4.2 (A:62-141) Lp 42.6 11 0.00078 16.9 3.3 58 33-94 12-72 (80) 26 d2j0wa3 d.58.18.10 (A:386-449) 36.7 5 0.00036 18.6 0.8 48 31-84 12-59 (64) 27 d1qlma_ d.147.1.1 (A:) Metheny 34.0 16 0.0011 16.0 3.3 30 60-89 130-159 (316) 28 d2cg4a2 d.58.4.2 (A:67-152) Re 32.3 17 0.0012 15.9 5.0 63 28-94 7-72 (86) 29 d2nzca1 d.58.18.14 (A:2-81) Hy 26.9 21 0.0015 15.3 5.8 62 28-90 9-73 (80) 30 d1xw8a_ c.6.2.5 (A:) Hypotheti 26.7 14 0.001 16.2 1.8 45 8-55 199-246 (247) 31 d2cyya2 d.58.4.2 (A:65-150) Pu 24.7 23 0.0017 15.1 4.5 58 33-94 12-71 (86) 32 d1b64a_ d.58.12.1 (A:) Guanine 24.2 24 0.0017 15.1 2.8 52 47-98 34-89 (91) 33 d3cjsb1 d.47.1.1 (B:1-70) Ribo 24.2 13 0.00095 16.4 1.2 16 39-54 22-37 (70) 34 d1uv7a_ d.67.4.1 (A:) General 23.7 24 0.0018 15.0 2.7 45 37-87 4-48 (80) 35 d1f60b_ d.58.12.1 (B:) Guanine 23.0 25 0.0018 14.9 5.3 30 69-98 57-88 (90) 36 d1gh8a_ d.58.12.1 (A:) aEF-1be 20.5 28 0.0021 14.6 3.9 62 36-98 22-86 (89) No 1 >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=99.90 E-value=1.4e-23 Score=142.80 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=75.3 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE Q ss_conf 79839999982878668899989973699632277421478981899999478899899999864988299999997 Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100) Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100) .+||+|++.|+|+||+||+|+++|++++|||++|+++|+++++.|+|++++|++++++++++|+++|+|.+||.+++ T Consensus 1 AeG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~~~V~~v~~i~l 77 (78) T d1ygya3 1 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDL 77 (78) T ss_dssp SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEEC T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEEC T ss_conf 98169999967969979999999986496932413300578976899999377766999999972779079999966 No 2 >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Probab=99.82 E-value=6.1e-21 Score=128.87 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=71.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE Q ss_conf 98399999828786688999899736996322774214789818999994788998999998649882999999 Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100) .+|+|++.|+|+|||||+|+++|+++|+||++|+++++.++++|+|.+++|++++++++++|+++|+|.++|.+ T Consensus 10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l 83 (84) T d1sc6a3 10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 83 (84) T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEE T ss_conf 88389999679699899999999973999899624457877489999978887779999999779987999973 No 3 >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Probab=98.41 E-value=7.4e-07 Score=54.64 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=62.3 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEEE Q ss_conf 8399999828786688999899736996322774214789818999994--788998999998649882999999 Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~i 95 (100) .|+|-+.=+|+||++++++++|+..|+||.++.++.....+..-|.+.+ |+..-+.+...|.++.+|.+|.-+ T Consensus 3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dl 77 (78) T d2fgca2 3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI 77 (78) T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 699999996777699999999861785547889821379984899999984989999999998578587999958 No 4 >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Probab=98.41 E-value=3.4e-07 Score=56.38 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=61.6 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEEE Q ss_conf 399999828786688999899736996322774214789818999994--788998999998649882999999 Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~i 95 (100) |+|.+.-+|+||++++|+++|+..|+||.++.++.....+..-|.+.+ |+..-+.+...|.++.+|.+|.-+ T Consensus 3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dl 76 (77) T d2pc6a2 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 76 (77) T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG T ss_pred EEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 79999997785499999999860685468899742589983899999977888999999998578687999979 No 5 >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Probab=98.40 E-value=6.7e-07 Score=54.86 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=59.6 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEE Q ss_conf 39999982878668899989973699632277421478981899999478--8998999998649882999999 Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i 95 (100) |+|.+.=+|+||++++++.+|+..++||.++.++.....+..-|.+.+.+ ..-+.+...|.++.+|.+|+-+ T Consensus 2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl 75 (76) T d2f1fa1 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 75 (76) T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 79999997777599999999872685567889704579981299999978888999999998578787999968 No 6 >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=98.39 E-value=9.7e-07 Score=54.01 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=54.1 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEE Q ss_conf 99999828786688999899736996322774214789-818999994--78899899999864988299999 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST-EHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQ 94 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g-~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~ 94 (100) -|-+.-.|+||+++.|+++++++++||.+.+......| ....+.+++ .+.--+.++++|+++|+|.+|+. T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver 75 (77) T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 75 (77) T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEE T ss_conf 5999995577769999999987699968888531678817999999997586449999999876999268885 No 7 >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=98.16 E-value=4.5e-06 Score=50.48 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=47.8 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC Q ss_conf 9999828786688999899736996322774214789818999994788998999998649 Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100) Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100) |-+.-.|+||.++++++.|++++|||.+|+.... ++.|++++.+|. |+...+.|++- T Consensus 2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~--~~~~~~vl~vdd--~~~a~~~L~~~ 58 (71) T d2f06a1 2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSN--MDKCIEVLKEK 58 (71) T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE--TTEEEEEEEESC--HHHHHHHHHHT T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC--CCCEEEEEEECC--HHHHHHHHHHC T ss_conf 8999569824899999999878987899998847--994799999799--99999999987 No 8 >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Probab=97.92 E-value=2.4e-05 Score=46.63 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=44.3 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCC-HHHHHHHHCCC Q ss_conf 399999828786688999899736996322774214789818999994--78899-89999986498 Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSIL-NSVLEKLSVNV 87 (100) Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~-~~vl~~i~~~~ 87 (100) ..|.+.-.|+||+++.|++.|+++|+||..++-... ++...+.+.+ +...+ +++.+++.++. T Consensus 3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~la 67 (83) T d1zpva1 3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAFG 67 (83) T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEE--CCEEEEEEEEEEECCCCHHHHHHHHHHHH T ss_conf 999999589887999999999978983999785983--79899999999845899999999999999 No 9 >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=97.83 E-value=6.7e-05 Score=44.29 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=49.7 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEE Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRF 91 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~ 91 (100) .|-+.-+|+||.+++++.+|+++||||.++.++... +.++.-+-+| -|++..+.|++.--... T Consensus 5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~--~~~i~Riiv~--~~e~a~~~L~~~g~~v~ 67 (70) T d2f06a2 5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIVS--DPDKAYKALKDNHFAVN 67 (70) T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEES--CHHHHHHHHHHTTCCEE T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECC--CCCEEEEEEC--CHHHHHHHHHHCCCEEE T ss_conf 999998378767999999998789778999976258--8988999987--84999999998798894 No 10 >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Probab=97.70 E-value=1.6e-05 Score=47.55 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=38.5 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC Q ss_conf 8399999828786688999899736996322774214789818999994788 Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS 74 (100) Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~ 74 (100) ...+.+.-.|+||+++.+++.|+++|+||...+..+. ++...+++.++.+ T Consensus 5 ~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~ 54 (86) T d1u8sa1 5 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGS 54 (86) T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEEC T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEE--CCEEEEEEEEECC T ss_conf 8999999389871999999999987976999674997--8915999999868 No 11 >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Probab=97.61 E-value=0.00018 Score=42.06 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=39.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCEEEEEEEE--CCCCC-HHHHHHHHCC Q ss_conf 9999982878668899989973699632277421478------9818999994--78899-8999998649 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS------TEHAISFLCI--DGSIL-NSVLEKLSVN 86 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~------g~~A~~ii~v--D~~i~-~~vl~~i~~~ 86 (100) .+.+.-.|+||+++.|+++|+++++||..++...... .....|-+.+ ....+ +++.+++.++ T Consensus 8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l 78 (93) T d1u8sa2 8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDAL 78 (93) T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHH T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 99999799899899999999986998053321232456786667658999999758643589999999999 No 12 >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Probab=97.60 E-value=0.00018 Score=42.03 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=49.7 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHHHHHHHHCCC-CEEEEEEE Q ss_conf 99999828786688999899736996322774214789--8189999947889989999986498-82999999 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNSVLEKLSVNV-TIRFVKQF 95 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~vl~~i~~~~-~v~~vr~i 95 (100) ++++...|+||.++++-+.++++|||+...+- |..++ +.-.-.+++++...+.+.+.++++. ....+|.+ T Consensus 4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeS-RP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kvL 76 (80) T d2qmwa2 4 FLITPMHDKPGLLASVLNTFALFNINLSWIES-RPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEMI 76 (80) T ss_dssp EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEE-EECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEEE T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99986799887899999999987987899995-64289985699999985488689999999999835968999 No 13 >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=96.53 E-value=0.0025 Score=36.06 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=45.4 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCCHHHHHHHHCC Q ss_conf 839999982878668899989973699632277421478-9818999994788998999998649 Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSILNSVLEKLSVN 86 (100) Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100) ...|++.-.|+||.++.+-+.|++++||+....-.-... .+.-.-.+++++...+.+...|..+ T Consensus 16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L 80 (97) T d1phza1 16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSL 80 (97) T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHH T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHH T ss_conf 08999996997878999999999879878999813168999449999984468849999999999 No 14 >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=91.55 E-value=0.059 Score=28.78 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=36.9 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC----CCHHHHHHHHCCCCEEEEEEE Q ss_conf 28786688999899736996322774214789818999994788----998999998649882999999 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS----ILNSVLEKLSVNVTIRFVKQF 95 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~----i~~~vl~~i~~~~~v~~vr~i 95 (100) .++||+.+++-+.|++++|||..... +.....+++=+-|.. ...++-+.++.++.+-.|..+ T Consensus 24 ~~~~G~~a~if~~La~~~Inv~~Is~---Se~~is~~v~~~~~~~a~~~~~~~~~~~~el~~ia~VsVv 89 (91) T d2cdqa2 24 LGQVGFLAKVFSIFEELGISVDVVAT---SEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLL 89 (91) T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEE---ETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEE T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEE---CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 88723999999999985992799980---6876999983668899999999999999998477269995 No 15 >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Probab=91.11 E-value=0.14 Score=26.74 Aligned_cols=50 Identities=32% Similarity=0.331 Sum_probs=33.4 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH Q ss_conf 287866889998997369963227742147898189999947889989999986 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100) +++||+.+++-+.|++++|||.-..-+ ..+..++++- ++.--+..++.|. T Consensus 12 ~~~~gi~arif~~L~~~~InV~mIsq~---~Se~~Is~~V-~~~d~~~Av~~Lh 61 (67) T d2hmfa2 12 RGAKGIAGKIFTAVSESGANIKMIAQG---SSEVNISFVI-DEKDLLNCVRKLH 61 (67) T ss_dssp TTCTTHHHHHHHHHHHTTCCCCEEEES---SCSSEEEEEE-EGGGHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHCCCCHHHEEEC---CCCCEEEEEE-EHHHHHHHHHHHH T ss_conf 888239999999999869986774534---8602499998-0899999999999 No 16 >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Probab=88.90 E-value=0.16 Score=26.51 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=34.5 Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH Q ss_conf 8287866889998997369963227742147898189999947889989999986 Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100) Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100) ..++||+.+++-+.|++++|||.-..-+ ..+..+. +.++..--+.+++.|. T Consensus 25 m~~~~Gi~arif~~La~~~InV~mIsQ~---~Se~~Is-f~V~~~d~~~a~~~L~ 75 (100) T d2hmfa3 25 MVGVSGTAARIFKALGEEEVNVILISQG---SSETNIS-LVVSEEDVDKALKALK 75 (100) T ss_dssp SSCHHHHHHHHHHHHHHTTCCEEEEEEC---CTTCCEE-EEECSTTHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHEECC---CCCCEEE-EEEEHHHHHHHHHHHH T ss_conf 7898546899999998859998893326---7764599-9984899999999999 No 17 >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Probab=85.43 E-value=0.15 Score=26.60 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=38.5 Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC------CHHHHHHHHCCCCEE Q ss_conf 8287866889998997369963227742147898189999947889------989999986498829 Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------LNSVLEKLSVNVTIR 90 (100) Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i------~~~vl~~i~~~~~v~ 90 (100) -..+||+.+++-+.|++++|||.-+.. +.....+.+=+-|... .+.++++|+++-.|. T Consensus 24 m~~~~G~~~~if~~L~~~~Inv~mis~---Se~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~V~ 87 (91) T d2j0wa2 24 MLHSRGFLAEVFGILARHNISVDLITT---SEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVE 87 (91) T ss_dssp CSCHHHHHHHHTTTTTTTTCCCSEEEE---ETTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEE T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC---CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 777767999999999985992899971---6748999984468799999998999999985459389 No 18 >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=80.66 E-value=0.54 Score=23.71 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=32.5 Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH Q ss_conf 828786688999899736996322774214789818999994788998999998 Q 537021.9.peg.3 30 NADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100) Q Consensus 30 ~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100) ..++||+.+++-+.|++++|||....-+ ..+..++++ +++.-.++++..| T Consensus 10 ~~~~~Giaarif~aL~~~~InV~mIsqg---~se~~Is~v-V~~~d~~~Av~~L 59 (75) T d2cdqa3 10 VQHSSLILERAFHVLYTKGVNVQMISQG---ASKVNISFI-VNEAEAEGCVQAL 59 (75) T ss_dssp GGGHHHHHHHHHHHHHHHTCCCSEEEEC---TTCSEEEEE-EEHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECC---CCCEEEEEE-EEHHHHHHHHHHH T ss_conf 9987139999999999869946988727---641679999-9089999999999 No 19 >d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} Probab=48.59 E-value=5.6 Score=18.37 Aligned_cols=49 Identities=22% Similarity=0.114 Sum_probs=30.0 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC Q ss_conf 28786688999899736996322774214789818999994788998999998649 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100) -|.+|+++.+++.|++++|-+-...... .+ +..+.. .--+++++.+++. T Consensus 13 l~~vGi~a~i~~~La~a~Is~~~vSty~---~D--~ilVp~--~~~~~A~~~L~~~ 61 (66) T d1zhva2 13 FDETGIVLSVISPLSTNGIGIFVVSTFD---GD--HLLVRS--NDLEKTADLLANA 61 (66) T ss_dssp CSSCCHHHHHHHHHHTTTCCCEEEECSS---CE--EEEEEG--GGHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEEEE---CC--EEEEEH--HHHHHHHHHHHHC T ss_conf 1467289999999987799869987441---63--799878--7899999999986 No 20 >d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]} Probab=48.51 E-value=8.8 Score=17.32 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=33.2 Q ss_pred EEEEEECCEEEEEECCCCEEEEEECCCCCHHH---HHHHHHHHCCCCEEEE Q ss_conf 78999799899765798399999828786688---9998997369963227 Q 537021.9.peg.3 7 PRFIKIQEINFDVDIGRLMICIVNADILGIVV---FVGNILGEYGINIAHF 54 (100) Q Consensus 7 ~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~---~v~~~L~~~~INIa~m 54 (100) -++..++|-.+.+..+ +|++ |-|.|+.+. .+-..|-++||.|..+ T Consensus 203 ~~V~t~~G~~i~i~ad--TICV-HgDtp~Av~~ak~ir~~L~~~gi~I~~f 250 (250) T d2dfaa1 203 GKVEALDGGEVAVRAD--TLCI-HGDNPNAPEVARAVREALEQAGVEVRAF 250 (250) T ss_dssp SEEEBTTSSEEECCCS--EEEE-C---CCHHHHHHHHHHHHHTTTCEECCC T ss_pred CCEEECCCCEEECCCC--EEEE-CCCCHHHHHHHHHHHHHHHHCCCEEECC T ss_conf 9879068988525689--8997-8999779999999999999886968169 No 21 >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Probab=47.49 E-value=8.7 Score=17.36 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=43.6 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCC Q ss_conf 79839999982878668899989973699632277421478981899999478899899999864988 Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVT 88 (100) Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~ 88 (100) |.-+++++.|.|+-| ++++-++-|. ++|....++++.+..-.+.+++...+.|+.+.. T Consensus 100 pnA~~iiI~~a~rfG-LaQLhQLRGR---------VGR~~~~s~c~l~~~~~~~~~~~a~~RL~~l~~ 157 (211) T d2eyqa5 100 PTANTIIIERADHFG-LAQLHQLRGR---------VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 157 (211) T ss_dssp TTEEEEEETTTTSSC-HHHHHHHHTT---------CCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTT T ss_pred CCCCEEEEECCHHCC-CCCCCCCCCE---------EEECCCCCEEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 987699871300033-1122230233---------553676654899856876777328899899985 No 22 >d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]} Probab=45.36 E-value=6.7 Score=17.94 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=29.8 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC Q ss_conf 28786688999899736996322774214789818999994788998999998649 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100) -|..|+++.|++.|+++||-+--..-.. .-+.++. ..--++.++.|+++ T Consensus 14 Le~VGl~A~is~~La~~~Is~nvis~~~-----hDhifVp--~~~~~~Al~~L~~l 62 (64) T d1zvpa2 14 LEAVGLTAAFATKLAEHGISANVIAGYY-----HDHIFVQ--KEKAQQALQALGEF 62 (64) T ss_dssp -CCSCHHHHHHHHHHHTTCCCEEEECSS-----CEEEEEE--GGGHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEC-----CCEEEEC--HHHHHHHHHHHHHH T ss_conf 6887689999999997799737877211-----5369873--55699999999996 No 23 >d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]} Probab=45.05 E-value=5.9 Score=18.22 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=34.7 Q ss_pred EEEEEECCEEEEEECCCCEEEEEECCCCCHHHH---HHHHHHHCCCCEEEE Q ss_conf 789997998997657983999998287866889---998997369963227 Q 537021.9.peg.3 7 PRFIKIQEINFDVDIGRLMICIVNADILGIVVF---VGNILGEYGINIAHF 54 (100) Q Consensus 7 ~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~---v~~~L~~~~INIa~m 54 (100) -++..++|-.+.+..+ +|++ |-|.|+.+.. +-+.|-++||-|..+ T Consensus 203 g~V~ti~G~~I~i~ad--TICV-HGDtp~Av~~a~~ir~~L~~~gi~I~pl 250 (254) T d1v6ta_ 203 GGIRAINGEWVDLKVD--TICV-HGDNPKAVEITSYIRKVLEEEGVKIVPM 250 (254) T ss_dssp SEEECTTSCEEECCCS--EEEC-CCSSHHHHHHHHHHHHHHHHTTCEECCG T ss_pred CCEEECCCCEEECCCC--EEEE-CCCCHHHHHHHHHHHHHHHHCCCEEEEH T ss_conf 9889158988743679--8997-9999789999999999999889999656 No 24 >d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]} Probab=43.46 E-value=11 Score=16.84 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=42.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC----HHHHHHHHCC Q ss_conf 9999982878668899989973699632277421478981899999478899----8999998649 Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL----NSVLEKLSVN 86 (100) Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~----~~vl~~i~~~ 86 (100) ++-+.-..+||.+.+....|+. .||..++- |...+..|-..+.+.-+-. +++++.+++. T Consensus 5 l~~v~iPErpGaf~~F~~~lg~--~nITeF~Y-R~~~~~~a~VlvGi~~~~~~~e~~~l~~~L~~~ 67 (88) T d1tdja2 5 LLAVTIPEEKGSFLKFCQLLGG--RSVTEFNY-RFADAKNACIFVGVRLSRGLEERKEILQMLNDG 67 (88) T ss_dssp EEEEECCBSSSCSHHHHHTTSS--SEEEEEEE-ECCCSSBCEEEEEEECSSTHHHHHHHHHHHTSS T ss_pred EEEEECCCCCCHHHHHHHHCCC--CCEEEEEE-ECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHC T ss_conf 9999768896599999985275--72679998-704898718999998668611599999999877 No 25 >d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=42.62 E-value=11 Score=16.86 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=35.0 Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC--HHHH-HHHHCCCCEEEEEE Q ss_conf 78668899989973699632277421478981899999478899--8999-99864988299999 Q 537021.9.peg.3 33 ILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL--NSVL-EKLSVNVTIRFVKQ 94 (100) Q Consensus 33 ~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~--~~vl-~~i~~~~~v~~vr~ 94 (100) .|+-...+...|++. =++...+ ...|..-+++.-.-.... .+++ ++|.++|||.+++. T Consensus 12 ~~~~~~~v~~~l~~~-peV~~~~---~vtG~~D~~~~v~~~d~~~l~~~l~~~i~~~~gV~~~~t 72 (80) T d1i1ga2 12 KPEKLFEVAEKLKEY-DFVKELY---LSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCP 72 (80) T ss_dssp CGGGHHHHHHHHHHS-TTEEEEC---CCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEE T ss_pred CCCCHHHHHHHHHCC-CCEEEEE---EECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 717599999998769-9986899---897999899999979999999999866415999779999 No 26 >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Probab=36.66 E-value=5 Score=18.62 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=28.5 Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH Q ss_conf 287866889998997369963227742147898189999947889989999986 Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100) Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100) ...||+.+++-+.|++.+|++-.+. ..+..+.++ +++.-.+..+..|. T Consensus 12 ~~~~gi~arif~~L~~~nI~~i~~~-----~Se~~is~v-V~~~d~~~Av~aLh 59 (64) T d2j0wa3 12 SKACGVGKEVFGVLEPFNIRMICYG-----ASSHNLCFL-VPGEDAEQVVQKLH 59 (64) T ss_dssp TTSSSHHHHHHSSCTTSCCCEEEES-----SCTTEEEEE-EEGGGHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHCCCEEEEEE-----CCCCEEEEE-ECHHHHHHHHHHHH T ss_conf 5483499999999865797699997-----570279999-83899999999999 No 27 >d1qlma_ d.147.1.1 (A:) Methenyltetrahydromethanopterin cyclohydrolase {Archaeon Methanopyrus kandleri [TaxId: 2320]} Probab=34.02 E-value=16 Score=16.01 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=24.8 Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHCCCCE Q ss_conf 789818999994788998999998649882 Q 537021.9.peg.3 60 QSTEHAISFLCIDGSILNSVLEKLSVNVTI 89 (100) Q Consensus 60 ~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v 89 (100) .+...|+.++|.|+.+|+++.++|.+--+| T Consensus 130 D~~~~avlvlE~~~lP~~~v~~~iA~~cgv 159 (316) T d1qlma_ 130 DDADVAILCLESSELPDEDVAEHVADECGV 159 (316) T ss_dssp CCCSCEEEEEECSSCCCHHHHHHHHHHHTS T ss_pred ECCCCEEEEEECCCCCCHHHHHHHHHHCCC T ss_conf 156716999964889899999999998099 No 28 >d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Probab=32.33 E-value=17 Score=15.86 Aligned_cols=63 Identities=11% Similarity=-0.025 Sum_probs=29.0 Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE-EEE-CCCCCHHHH-HHHHCCCCEEEEEE Q ss_conf 99828786688999899736996322774214789818999-994-788998999-99864988299999 Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF-LCI-DGSILNSVL-EKLSVNVTIRFVKQ 94 (100) Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i-i~v-D~~i~~~vl-~~i~~~~~v~~vr~ 94 (100) ..+-+.|.-...+...|.+.- ++...+. - .|+.-+++ +.. |.+-=.+++ ++|.++|||.+.+. T Consensus 7 ~I~~~~~~~~~~~~~~l~~~p-eV~~~~~--v-tG~~D~i~~v~~~d~~~l~~~i~~~i~~~~gV~~t~T 72 (86) T d2cg4a2 7 GIILKSAKDYPSALAKLESLD-EVTEAYY--T-TGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTET 72 (86) T ss_dssp EEEESSGGGHHHHHHHHHTCT-TEEEEEE--E-SSSCSEEEEEEESCHHHHHHHHHHTTTTSTTEEEEEE T ss_pred EEEECCCCCHHHHHHHHHCCC-CEEEEEE--E-CCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 999889878999999997699-9779999--6-4986599999989999999999998535999807999 No 29 >d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]} Probab=26.85 E-value=21 Score=15.33 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=43.7 Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEE-EEEEECCCCCCEEEEEEEECCCCC--HHHHHHHHCCCCEE Q ss_conf 9982878668899989973699632-277421478981899999478899--89999986498829 Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIA-HFHLGRSQSTEHAISFLCIDGSIL--NSVLEKLSVNVTIR 90 (100) Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa-~m~l~r~~~g~~A~~ii~vD~~i~--~~vl~~i~~~~~v~ 90 (100) +.-+|+--...+|..+|.+++..|- .|-+.-.. .+.++..+.+|++-+ .++-.+|.++|||. T Consensus 9 Iive~r~~~a~kVn~iL~~yg~~I~gRmGip~~~-~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~ 73 (80) T d2nzca1 9 IVVEDREKAYRQVNELLHNFSEDILLRVGYPVRE-ENMAIIFLVLKTDNDTIGALSGKLGQISGVR 73 (80) T ss_dssp EEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGG-GTEEEEEEEEEECHHHHHHHHHHHHTSTTEE T ss_pred EEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCC-CCCEEEEEEEECCHHHHHHHHHHHCCCCCEE T ss_conf 9996827768999999987788789854687054-6925999999888879999887636999889 No 30 >d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]} Probab=26.66 E-value=14 Score=16.21 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=32.7 Q ss_pred EEEEECCEEEEEECCCCEEEEEECCCCCHHH---HHHHHHHHCCCCEEEEE Q ss_conf 8999799899765798399999828786688---99989973699632277 Q 537021.9.peg.3 8 RFIKIQEINFDVDIGRLMICIVNADILGIVV---FVGNILGEYGINIAHFH 55 (100) Q Consensus 8 riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~---~v~~~L~~~~INIa~m~ 55 (100) ++..++|-.+.+.. .+|++ |-|.|+.+. .+-+.|.++||-|..+. T Consensus 199 ~V~ti~G~~I~l~a--dTICV-HGDtp~Av~~ak~Ir~~L~~~gI~I~~~~ 246 (247) T d1xw8a_ 199 RVKSITGEWATVAA--QTVCL-HGDGEHALAFARRLRSAFAEKGIVVAALE 246 (247) T ss_dssp EEECTTSCEEECCC--CEEEC-CCCC-CCHHHHHHHHHHC----CCBCCCC T ss_pred CEECCCCCEECCCC--CEEEE-CCCCHHHHHHHHHHHHHHHHCCCEEECCC T ss_conf 87867899810788--97987-99997899999999999998899895188 No 31 >d2cyya2 d.58.4.2 (A:65-150) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=24.66 E-value=23 Score=15.11 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=34.7 Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEE Q ss_conf 786688999899736996322774214789818999994--78899899999864988299999 Q 537021.9.peg.3 33 ILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQ 94 (100) Q Consensus 33 ~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~ 94 (100) .|+-...+...|.+.. ++...+ .-.|..-+++.-. |.+-=++++++|.++|||.+++. T Consensus 12 ~~~~~~~v~~~l~~~p-eV~~~~---~~tG~~D~~~~v~~~~~~~l~~~~~~l~~~~gV~~~~T 71 (86) T d2cyya2 12 KAGKYSEVASNLAKYP-EIVEVY---ETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHT 71 (86) T ss_dssp CTTCHHHHHHHHHTCT-TEEEEE---ECSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEE T ss_pred CCCCHHHHHHHHHCCC-CEEEEE---EECCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 7899999999997797-867999---97489989999998999999999999847999717999 No 32 >d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Probab=24.24 E-value=24 Score=15.06 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=33.8 Q ss_pred CCCCEEEEEEECCCCCCEEEEEE--EECCC-CCHHHHHHHHCCCC-EEEEEEEEEE Q ss_conf 69963227742147898189999--94788-99899999864988-2999999974 Q 537021.9.peg.3 47 YGINIAHFHLGRSQSTEHAISFL--CIDGS-ILNSVLEKLSVNVT-IRFVKQFEFN 98 (100) Q Consensus 47 ~~INIa~m~l~r~~~g~~A~~ii--~vD~~-i~~~vl~~i~~~~~-v~~vr~i~~~ 98 (100) .|..+.....---.-|=.++-+. --|.. -++++.++|.++++ |.++-...|| T Consensus 34 ~gl~wg~~k~~PIaFGlkkL~i~~vveDd~~~~D~lee~i~~~Ed~VqsvdI~s~n 89 (91) T d1b64a_ 34 DGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFN 89 (91) T ss_dssp TTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHHHTTCTTTEEEEEESCCB T ss_pred CCCCEEEEEEEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 65737127899887444639999999948758699999988622930689999764 No 33 >d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=24.22 E-value=13 Score=16.42 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=14.0 Q ss_pred HHHHHHHHCCCCEEEE Q ss_conf 9998997369963227 Q 537021.9.peg.3 39 FVGNILGEYGINIAHF 54 (100) Q Consensus 39 ~v~~~L~~~~INIa~m 54 (100) .+|..||.+||||..+ T Consensus 22 PvGpaLG~~GiNi~~F 37 (70) T d3cjsb1 22 PVGPALGQHGANIMEF 37 (70) T ss_dssp THHHHHHTTTCCHHHH T ss_pred CCCCHHHHCCCCHHHH T ss_conf 9764254528679999 No 34 >d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]} Probab=23.71 E-value=24 Score=15.00 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=31.5 Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC Q ss_conf 889998997369963227742147898189999947889989999986498 Q 537021.9.peg.3 37 VVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV 87 (100) Q Consensus 37 I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~ 87 (100) -+.|++...++++.|..|+- .|+ . +-+-+|...-++++..|..+. T Consensus 4 ~~~v~~Sa~~~gl~i~R~QP----~gd-~-vqV~ld~v~F~~ll~WL~~L~ 48 (80) T d1uv7a_ 4 NQVITNSTRQFNIELIRVQP----RGE-M-MQVWIQPLPFSQLVSWIAYLQ 48 (80) T ss_dssp HHHHHHHHHHHTCCEEEEEE----CSS-E-EEEEECCBCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEECC----CCC-E-EEEEECCCCHHHHHHHHHHHH T ss_conf 89999999877983898557----998-7-999986879899999999997 No 35 >d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=23.03 E-value=25 Score=14.93 Aligned_cols=30 Identities=3% Similarity=0.130 Sum_probs=23.8 Q ss_pred EEECCCCC-HHHHHHHHCCCC-EEEEEEEEEE Q ss_conf 99478899-899999864988-2999999974 Q 537021.9.peg.3 69 LCIDGSIL-NSVLEKLSVNVT-IRFVKQFEFN 98 (100) Q Consensus 69 i~vD~~i~-~~vl~~i~~~~~-v~~vr~i~~~ 98 (100) +--|...+ +++.++|.++++ |++|-...|| T Consensus 57 vveDd~~~~D~lee~i~~~Ed~VqSvdI~~~~ 88 (90) T d1f60b_ 57 VVEDDKVSLDDLQQSIEEDEDHVQSTDIAAMQ 88 (90) T ss_dssp EEETTTCCHHHHHHHHHTCTTTEEEEEEEEEE T ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 99928748799999877422931689999876 No 36 >d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=20.51 E-value=28 Score=14.64 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=38.7 Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--C-CCCCHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 688999899736996322774214789818999994--7-88998999998649882999999974 Q 537021.9.peg.3 36 IVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--D-GSILNSVLEKLSVNVTIRFVKQFEFN 98 (100) Q Consensus 36 ~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D-~~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100) +-..+-+++ ..|..+.....---.-|=.++-+..+ | .--.+++-+.|+++++|.++-..+++ T Consensus 22 l~~~ik~~~-~~g~~~~~~~~~PiaFGLk~L~v~~vv~D~~g~~D~lee~i~~ie~Vqsvev~~~~ 86 (89) T d1gh8a_ 22 LKKEIQERI-PEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGIEGVSNIEVTDVR 86 (89) T ss_dssp HHHHHHHHS-CTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHHHTTSCSSEEEEEEEEE T ss_pred HHHHHHHHC-CCCCEEEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 999998646-58767988898878726174999999981883768999998455897589868756 Done!