RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.33_1
(100 letters)
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosynthesis, structural genomics, PSI, protein
structure initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2
PDB: 3dc2_A* 3ddn_A*
Length = 529
Score = 76.0 bits (186), Expect = 2e-15
Identities = 18/95 (18%), Positives = 38/95 (40%)
Query: 4 DGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE 63
+ ++I +FD+ + + I D G + +G +LG G+NI L
Sbjct: 435 QLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGP 494
Query: 64 HAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEFN 98
A L +D + + V ++ V ++ + +
Sbjct: 495 GATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS 529
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 33.0 bits (74), Expect = 0.015
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL-S 84
+ ++ + G++ + I E G+NIA +L S + + + D + L+ + +
Sbjct: 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKA 393
Query: 85 VNVTIR 90
+ TIR
Sbjct: 394 IPGTIR 399
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 30.7 bits (69), Expect = 0.088
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 43/103 (41%)
Query: 2 FSDGKPRF------I--------------KIQEINFDVDIGRLMICIVNADILGIVVF-- 39
FS+ K +F + I + D+ + + D + I V+
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINK-----DLVKNNVSFNAKD-IQIPVYDT 462
Query: 40 -VGNILGEYGINIAHFHLGR---------SQSTE----HAISF 68
G+ L +I+ + +T+ H + F
Sbjct: 463 FDGSDLRVLSGSISE-RIVDCIIRLPVKWETTTQFKATHILDF 504
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 27.2 bits (59), Expect = 0.98
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQST---EHAI 66
V + G + FH G S + EH++
Sbjct: 80 DYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSV 114
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease
asparagine switch; 1.30A {Staphylococcus aureus subsp}
SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Length = 291
Score = 26.9 bits (59), Expect = 1.0
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQSTEHA 65
G VV G G + + +
Sbjct: 204 GTVVQAGWSNYGGGNQVTIKEANSNNYQWYM 234
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP:
d.58.18.7
Length = 91
Score = 25.9 bits (57), Expect = 2.1
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75
+ +I +V D GIV V + E G+NI ++ + D
Sbjct: 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRN 64
Query: 76 -LNSVLEKLSVNVTIR 90
+ + L+V + I+
Sbjct: 65 EFEAFGQTLNVKINIQ 80
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 25.6 bits (56), Expect = 2.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 40 VGNILGEYGINIAHFH 55
VG+ L Y I+ FH
Sbjct: 409 VGSDLRYYKISPDQFH 424
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 25.6 bits (55), Expect = 2.7
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75
G + G++ Y H H EH+I +
Sbjct: 75 GACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEM 117
>1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A
{Hypocrea jecorina} SCOP: b.29.1.10
Length = 371
Score = 25.5 bits (56), Expect = 3.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 3 SDGKPRFIKI--QEINFDVDIGRLMICIVNA 31
SDG+ +K+ QE++FDVD+ L C N
Sbjct: 114 SDGEYVMLKLNGQELSFDVDLSALP-CGENG 143
>3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 25.3 bits (55), Expect = 3.4
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 16 NFDVDIGRLMICIVNADILGIVVFVG 41
D +I + +V GI+ +G
Sbjct: 497 VSDAEIRAEGLNLVMGTTPGIIAIIG 522
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 25.2 bits (54), Expect = 3.4
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 37 VVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75
V+ G Y + HFH G + EH + + +
Sbjct: 78 VLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAEL 118
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A
{Mycobacterium tuberculosis}
Length = 147
Score = 24.9 bits (54), Expect = 4.3
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVG 41
++G + ++ + VD ++ + + GIV+FVG
Sbjct: 6 AEGAYPYCRLTDQPLSVD--EVLAAVSGPEQGGIVIFVG 42
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
acetylation, cytoplasm, disease mutation, lyase,
metal-BIND polymorphism, zinc; HET: HGB SUA; 0.90A {Homo
sapiens} PDB: 1ca3_A* 1cnw_A* 1cny_A* 1eou_A* 1g6v_A
1hca_A 1kwq_A* 1kwr_A* 1t9n_A 1tb0_X 1tbt_X 1te3_X
1teq_X 1teu_X 1cnx_A 1xev_A 1xeg_A 2ax2_A* 2eu3_A*
2ez7_A* ...
Length = 260
Score = 24.8 bits (53), Expect = 4.4
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66
G + V+ G + G Y + HFH G EH +
Sbjct: 63 GHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTV 109
>3mdz_A Carbonic anhydrase 7; structural genomics, structural consortium,
SGC, cytoplasm, lyase, metal-binding, zinc; HET: EZL;
2.32A {Homo sapiens}
Length = 281
Score = 24.7 bits (53), Expect = 4.5
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 36 IVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66
VV G + G Y + HFH G+ EH +
Sbjct: 98 TVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTV 130
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, zinc, metal binding
protein; HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A*
3da2_A*
Length = 264
Score = 24.8 bits (53), Expect = 5.2
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 37 VVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL 76
V+ G + G Y + H H G + EH + + +
Sbjct: 81 VLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELH 122
>2nyi_A Unknown protein; protein structure initiative, PSI, center for
eukaryotic structural genomics, CESG, structural
genomics; 1.80A {Galdieria sulphuraria}
Length = 195
Score = 24.3 bits (52), Expect = 5.9
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75
+ + D GIV V +L + G NI + + + +
Sbjct: 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY 152
Query: 76 ------LNSVLEKLSVNVTIRFV 92
L+ V E+ V++ + V
Sbjct: 153 QEVVTALSRVEEEFGVDIDLEEV 175
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 24.0 bits (52), Expect = 7.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 15 INFDVDIGRLMICIVNADILGIVVFVG 41
+N D + L+ +VN +I GIV+FVG
Sbjct: 424 VNADDPLKPLVDNVVNGNIQGIVLFVG 450
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.329 0.147 0.428
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 883,608
Number of extensions: 35675
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 28
Length of query: 100
Length of database: 5,693,230
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,093,126
Effective search space: 139166284
Effective search space used: 139166284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)