RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.33_1 (100 letters) >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78 Score = 46.4 bits (110), Expect = 7e-07 Identities = 15/70 (21%), Positives = 27/70 (38%) Query: 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 + I D G + +G +LG G+NI L A L +D + + V ++ Sbjct: 5 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIA 64 Query: 85 VNVTIRFVKQ 94 V ++ Sbjct: 65 AAVDAYKLEV 74 >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84 Score = 42.4 bits (100), Expect = 9e-06 Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81 G + ++ + G++ + I E G+NIA +L S + + + D + L+ Sbjct: 10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQ 69 Query: 82 KL 83 + Sbjct: 70 AM 71 >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86 Score = 27.1 bits (60), Expect = 0.46 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 7/75 (9%) Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75 L+I V D GI V ++ + G NI + + + S Sbjct: 5 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETT 64 Query: 76 LNSVLEKLSVNVTIR 90 L + ++ + ++ Sbjct: 65 LPLLGQQHDLITMMK 79 >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93 Score = 25.7 bits (56), Expect = 1.0 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 16/84 (19%) Query: 26 ICIVNADILGIVVFVGNILGEYGINIAHF--HLGRSQSTEHAISFLCIDGSI-------- 75 + + + D LG+ + I +A + I S Sbjct: 9 VYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNL 68 Query: 76 ------LNSVLEKLSVNVTIRFVK 93 +++ L V ++ F+K Sbjct: 69 MQLQEEFDALCTALDVQGSLNFIK 92 >d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus), isozyme IV [TaxId: 10090]} Length = 258 Score = 25.2 bits (54), Expect = 1.5 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%) Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75 G + G++ Y H H EH+I + Sbjct: 75 GACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEM 117 >d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]} Length = 270 Score = 25.0 bits (54), Expect = 1.6 Identities = 5/30 (16%), Positives = 8/30 (26%) Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQSTEH 64 G VV G G + + + Sbjct: 185 GTVVQAGWSNYGGGNQVTIKEANSNNYQWY 214 >d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]} Length = 371 Score = 24.8 bits (54), Expect = 2.1 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Query: 3 SDGKPRFIKI--QEINFDVDIGRLMICIVNA 31 SDG+ +K+ QE++FDVD+ L C N Sbjct: 114 SDGEYVMLKLNGQELSFDVDLSALP-CGENG 143 >d1gpia_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Phanerochaete chrysosporium, Cel7d [TaxId: 5306]} Length = 431 Score = 24.8 bits (54), Expect = 2.1 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%) Query: 13 QEINFDVDIGRLMICIVNA 31 QE FDVD+ L C +N Sbjct: 122 QEFTFDVDMSNLP-CGLNG 139 >d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), erythrocytes, isozyme I [TaxId: 9606]} Length = 258 Score = 24.4 bits (52), Expect = 2.3 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%) Query: 37 VVFVGNILGEYGINIAHFHLGRSQST--EHAI 66 V+ G Y + HFH G + EH + Sbjct: 76 VLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTV 107 >d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), erythrocytes, isozyme II [TaxId: 9606]} Length = 259 Score = 24.4 bits (52), Expect = 2.6 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 37 VVFVGNILGEYGINIAHFHLGRSQST--EHAI 66 V+ G + G Y + HFH G EH + Sbjct: 77 VLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTV 108 >d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), isozyme IV [TaxId: 9606]} Length = 262 Score = 23.7 bits (50), Expect = 4.4 Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 2/34 (5%) Query: 35 GIVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66 + G + Y H H EH++ Sbjct: 75 KASISGGGLPAPYQAKQLHLHWSDLPYKGSEHSL 108 >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 Score = 23.7 bits (51), Expect = 4.8 Identities = 7/21 (33%), Positives = 11/21 (52%) Query: 40 VGNILGEYGINIAHFHLGRSQ 60 VG+ L Y I+ FH+ + Sbjct: 409 VGSDLRYYKISPDQFHVFNQK 429 >d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190 Score = 23.1 bits (49), Expect = 7.1 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 36 IVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS 74 V++ G + E+ HFH ++ E ++ + G Sbjct: 72 TVLYPGKVGKEFFFTKGHFHAKLDRA-EV---YVALKGK 106 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.329 0.147 0.428 Gapped Lambda K H 0.267 0.0687 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 387,846 Number of extensions: 16027 Number of successful extensions: 60 Number of sequences better than 10.0: 1 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 18 Length of query: 100 Length of database: 2,407,596 Length adjustment: 62 Effective length of query: 38 Effective length of database: 1,556,336 Effective search space: 59140768 Effective search space used: 59140768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 47 (22.0 bits)