RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.33_1
         (100 letters)



>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
          regulatory (C-terminal) domain {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 78

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 15/70 (21%), Positives = 27/70 (38%)

Query: 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84
           + I   D  G +  +G +LG  G+NI    L        A   L +D  + + V   ++
Sbjct: 5  NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIA 64

Query: 85 VNVTIRFVKQ 94
            V    ++ 
Sbjct: 65 AAVDAYKLEV 74


>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
          regulatory (C-terminal) domain {Escherichia coli
          [TaxId: 562]}
          Length = 84

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81
          G   +  ++ +  G++  +  I  E G+NIA  +L  S    + +  +  D  +    L+
Sbjct: 10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQ 69

Query: 82 KL 83
           +
Sbjct: 70 AM 71


>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor
          VC2159 {Vibrio cholerae [TaxId: 666]}
          Length = 86

 Score = 27.1 bits (60), Expect = 0.46
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI------- 75
           L+I  V  D  GI   V  ++ + G NI    +         +  +    S        
Sbjct: 5  HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETT 64

Query: 76 LNSVLEKLSVNVTIR 90
          L  + ++  +   ++
Sbjct: 65 LPLLGQQHDLITMMK 79


>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor
          VC2159 {Vibrio cholerae [TaxId: 666]}
          Length = 93

 Score = 25.7 bits (56), Expect = 1.0
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 16/84 (19%)

Query: 26 ICIVNADILGIVVFVGNILGEYGINIAHF--HLGRSQSTEHAISFLCIDGSI-------- 75
          + + + D LG+         +  I +A                +   I  S         
Sbjct: 9  VYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNL 68

Query: 76 ------LNSVLEKLSVNVTIRFVK 93
                 +++   L V  ++ F+K
Sbjct: 69 MQLQEEFDALCTALDVQGSLNFIK 92


>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
           isozyme IV [TaxId: 10090]}
          Length = 258

 Score = 25.2 bits (54), Expect = 1.5
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)

Query: 35  GIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSI 75
           G  +  G++   Y     H H         EH+I        +
Sbjct: 75  GACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEM 117


>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 270

 Score = 25.0 bits (54), Expect = 1.6
 Identities = 5/30 (16%), Positives = 8/30 (26%)

Query: 35  GIVVFVGNILGEYGINIAHFHLGRSQSTEH 64
           G VV  G      G  +       +    +
Sbjct: 185 GTVVQAGWSNYGGGNQVTIKEANSNNYQWY 214


>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei,
           Endoglucanase I [TaxId: 51453]}
          Length = 371

 Score = 24.8 bits (54), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 3   SDGKPRFIKI--QEINFDVDIGRLMICIVNA 31
           SDG+   +K+  QE++FDVD+  L  C  N 
Sbjct: 114 SDGEYVMLKLNGQELSFDVDLSALP-CGENG 143


>d1gpia_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Phanerochaete chrysosporium,
           Cel7d [TaxId: 5306]}
          Length = 431

 Score = 24.8 bits (54), Expect = 2.1
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)

Query: 13  QEINFDVDIGRLMICIVNA 31
           QE  FDVD+  L  C +N 
Sbjct: 122 QEFTFDVDMSNLP-CGLNG 139


>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           erythrocytes, isozyme I [TaxId: 9606]}
          Length = 258

 Score = 24.4 bits (52), Expect = 2.3
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 37  VVFVGNILGEYGINIAHFHLGRSQST--EHAI 66
           V+  G     Y +   HFH G +     EH +
Sbjct: 76  VLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTV 107


>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           erythrocytes, isozyme II [TaxId: 9606]}
          Length = 259

 Score = 24.4 bits (52), Expect = 2.6
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 37  VVFVGNILGEYGINIAHFHLGRSQST--EHAI 66
           V+  G + G Y +   HFH G       EH +
Sbjct: 77  VLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTV 108


>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           isozyme IV [TaxId: 9606]}
          Length = 262

 Score = 23.7 bits (50), Expect = 4.4
 Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 2/34 (5%)

Query: 35  GIVVFVGNILGEYGINIAHFHLGRSQST--EHAI 66
              +  G +   Y     H H         EH++
Sbjct: 75  KASISGGGLPAPYQAKQLHLHWSDLPYKGSEHSL 108


>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
           {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 23.7 bits (51), Expect = 4.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 40  VGNILGEYGINIAHFHLGRSQ 60
           VG+ L  Y I+   FH+   +
Sbjct: 409 VGSDLRYYKISPDQFHVFNQK 429


>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 190

 Score = 23.1 bits (49), Expect = 7.1
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 36  IVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS 74
            V++ G +  E+     HFH    ++ E    ++ + G 
Sbjct: 72  TVLYPGKVGKEFFFTKGHFHAKLDRA-EV---YVALKGK 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.147    0.428 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,846
Number of extensions: 16027
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 18
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)