RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.330_1
         (43 letters)



>gnl|CDD|182003 PRK09628, oorB, 2-oxoglutarate-acceptor oxidoreductase subunit
          OorB; Reviewed.
          Length = 277

 Score = 25.8 bits (57), Expect = 2.5
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 17 DKSIPSFFSFGCSDEFILKSLIIQI 41
          DK +P+ + +GC D  ILKS+I  I
Sbjct: 12 DK-MPTLWCWGCGDGVILKSIIRAI 35


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.146    0.416 

Gapped
Lambda     K      H
   0.267   0.0808    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 662,346
Number of extensions: 23058
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 43
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,627,137
Effective search space: 146305562
Effective search space used: 146305562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (22.9 bits)