Query         537021.9.peg.34_1
Match_columns 208
No_of_seqs    193 out of 5626
Neff          6.0 
Searched_HMMs 39220
Date          Wed May 25 16:33:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_34.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK13581 D-3-phosphoglycerate  100.0       0       0  497.3  19.3  207    1-207   198-405 (524)
  2 KOG0068 consensus              100.0       0       0  341.7   9.7  195    1-197   206-406 (406)
  3 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.5E-44       0  299.0  14.6  206    1-206   200-411 (535)
  4 PRK11790 D-3-phosphoglycerate  100.0 1.4E-45       0  306.3   7.4  160    1-160   209-379 (409)
  5 COG0111 SerA Phosphoglycerate  100.0 8.6E-42       0  281.9   9.4  118    1-120   203-321 (324)
  6 PRK13243 glyoxylate reductase; 100.0 1.2E-41       0  281.1   8.6  119    1-119   210-328 (333)
  7 PRK08605 D-lactate dehydrogena 100.0 1.9E-40 4.2E-45  273.5   8.7  113    1-113   206-332 (332)
  8 PRK12480 D-lactate dehydrogena 100.0 1.2E-39 2.9E-44  268.6   8.3  113    1-113   204-330 (330)
  9 PRK07574 formate dehydrogenase 100.0 4.3E-39 1.1E-43  265.0   9.5  112    1-112   254-366 (385)
 10 PRK06487 glycerate dehydrogena 100.0 2.4E-38   6E-43  260.4   8.0  112    1-113   203-317 (317)
 11 PRK06932 glycerate dehydrogena 100.0 4.9E-38 1.2E-42  258.4   7.6  107    1-107   203-314 (314)
 12 COG1052 LdhA Lactate dehydroge 100.0 8.9E-37 2.3E-41  250.5   8.8  114    1-114   206-323 (324)
 13 PRK08410 2-hydroxyacid dehydro 100.0 1.5E-36 3.9E-41  249.1   8.2  106    1-107   202-311 (311)
 14 PRK06436 glycerate dehydrogena 100.0 1.4E-35 3.7E-40  243.0   8.0  111    1-114   179-290 (303)
 15 KOG0069 consensus              100.0 1.1E-33 2.8E-38  231.2   8.2  113    1-113   223-335 (336)
 16 PRK00257 erythronate-4-phospha 100.0 1.6E-31 4.1E-36  217.7   9.0  111    1-112   173-287 (379)
 17 pfam02826 2-Hacid_dh_C D-isome 100.0 8.4E-30 2.1E-34  206.9   5.4   81    1-81     95-176 (176)
 18 pfam00389 2-Hacid_dh D-isomer  100.0 1.6E-28 4.2E-33  198.8   7.7  112    2-113   201-313 (313)
 19 KOG0067 consensus               99.4 6.7E-13 1.7E-17  101.2   4.7  109    1-114   239-350 (435)
 20 PTZ00311 phosphoenolpyruvate c  93.6    0.33 8.5E-06   28.0   6.6   99    3-104   413-526 (543)
 21 TIGR00719 sda_beta L-serine de  92.9   0.068 1.7E-06   32.3   2.2   75  128-204    21-98  (208)
 22 cd00484 PEPCK_ATP Phosphoenolp  88.1     2.3 5.8E-05   22.8   7.0   39    7-48    228-275 (508)
 23 PRK09344 phosphoenolpyruvate c  87.9     2.3 5.9E-05   22.7   7.0   12   10-21    245-256 (525)
 24 pfam03315 SDH_beta Serine dehy  81.6     2.7 6.8E-05   22.4   4.3   55  134-188    15-73  (148)
 25 cd01919 PEPCK Phosphoenolpyruv  75.6     6.9 0.00018   19.8   5.8   24  163-186   430-453 (515)
 26 cd00401 AdoHcyase S-adenosyl-L  64.8     5.6 0.00014   20.4   2.5   41    5-49     45-85  (413)
 27 pfam00670 AdoHcyase_NAD S-aden  64.3     5.2 0.00013   20.6   2.2   34    9-42     88-122 (162)
 28 PRK05476 S-adenosyl-L-homocyst  63.3     5.8 0.00015   20.3   2.3   35    9-43    273-308 (427)
 29 pfam01262 AlaDh_PNT_C Alanine   62.8     5.4 0.00014   20.4   2.1   25   33-58     28-52  (150)
 30 PTZ00075 S-adenosyl-L-homocyst  62.2     6.1 0.00016   20.1   2.3   35    9-43    319-354 (476)
 31 PRK09424 pntA NAD(P) transhydr  61.4     6.6 0.00017   19.9   2.4   43   14-58     76-118 (510)
 32 pfam05221 AdoHcyase S-adenosyl  61.1     7.3 0.00019   19.6   2.5   24    9-32    275-298 (430)
 33 TIGR00936 ahcY adenosylhomocys  52.5     9.8 0.00025   18.8   2.0  128    9-151   276-416 (422)
 34 COG0686 Ald Alanine dehydrogen  49.7      11 0.00027   18.6   1.8  105   25-143    32-148 (371)
 35 cd01171 YXKO-related B.subtili  47.9     3.7 9.5E-05   21.4  -0.7   58   21-82     76-138 (254)
 36 COG0499 SAM1 S-adenosylhomocys  46.5      17 0.00043   17.4   2.5   44    8-51    273-318 (420)
 37 pfam01293 PEPCK_ATP Phosphoeno  46.1      21 0.00053   16.8   2.9  164    9-176   231-437 (451)
 38 TIGR01465 cobM_cbiF precorrin-  41.8      20 0.00051   16.9   2.2   39   12-50     34-73  (252)
 39 pfam09692 Arb1 Argonaute siRNA  41.8      28 0.00071   16.0   3.0   72   33-106    82-158 (392)
 40 COG3288 PntA NAD/NADP transhyd  35.8      24 0.00062   16.4   1.9   26   94-119   103-128 (356)
 41 TIGR01616 nitro_assoc nitrogen  33.7      16 0.00041   17.5   0.7   43   96-141    40-85  (131)
 42 COG1606 ATP-utilizing enzymes   30.6      42  0.0011   14.9   5.3   82   19-104    12-110 (269)
 43 pfam03446 NAD_binding_2 NAD bi  30.3      43  0.0011   14.8   2.8   12  111-122    91-102 (163)
 44 KOG0046 consensus               27.9      47  0.0012   14.6   2.3   35    3-42    142-179 (627)
 45 TIGR01123 ilvE_II branched-cha  27.3      36 0.00091   15.3   1.6  129   66-203    92-253 (329)
 46 PRK13937 phosphoheptose isomer  26.8      31 0.00079   15.7   1.2   30  178-207   120-149 (192)
 47 cd06309 PBP1_YtfQ_like Peripla  26.4      48  0.0012   14.5   2.1  153   26-197    32-210 (273)
 48 COG2306 Predicted RNA-binding   26.0      41  0.0011   14.9   1.7   18   91-108   144-161 (183)
 49 PRK00414 gmhA phosphoheptose i  23.8      37 0.00093   15.3   1.1   29  179-207   122-150 (192)
 50 PRK13936 phosphoheptose isomer  23.8      34 0.00085   15.5   0.9   31  177-207   120-150 (197)
 51 TIGR00289 TIGR00289 conserved   23.2      48  0.0012   14.5   1.6  100   25-136     4-115 (227)
 52 COG2875 CobM Precorrin-4 methy  23.1      58  0.0015   14.0   2.5   39   11-49     37-76  (254)
 53 TIGR01077 L13_A_E ribosomal pr  22.9      42  0.0011   14.9   1.3   22  166-189    13-34  (144)
 54 TIGR00151 ispF 2C-methyl-D-ery  22.8      58  0.0015   14.0   3.9   87   39-155    49-135 (159)
 55 cd05006 SIS_GmhA Phosphoheptos  22.1      38 0.00096   15.2   0.9   28  179-206   112-139 (177)
 56 TIGR00625 tfb2 Transcription f  21.5      61  0.0016   13.9   1.9   55   70-128   366-441 (507)
 57 TIGR01326 OAH_OAS_sulfhy O-ace  21.4      62  0.0016   13.8   3.0   70   76-158   284-361 (434)
 58 PRK10886 DnaA initiator-associ  21.4      42  0.0011   14.9   1.0   30  178-207   119-148 (196)
 59 pfam08745 UPF0278 UPF0278 fami  20.4      65  0.0017   13.7   3.3   59  116-174    46-108 (206)
 60 KOG1370 consensus               20.2      66  0.0017   13.7   1.8   26    8-33    278-303 (434)

No 1  
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=497.33  Aligned_cols=207  Identities=49%  Similarity=0.761  Sum_probs=203.5

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113233201045420021020
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL   80 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi   80 (208)
                      +|+|||++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||||||++|||.++||+++|||++||||
T Consensus       198 lH~Plt~eT~~li~~~~~~~MK~ga~lIN~aRG~iVde~aL~~AL~~g~i~gAalDVf~~EP~~~~pL~~~~nvi~TPHi  277 (524)
T PRK13581        198 LHTPLTPETRNLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPATDSPLFGLPNVIVTPHL  277 (524)
T ss_pred             ECCCCCHHHHHHCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCEEECCCC
T ss_conf             93678615544307999960689986997488760589999999964997659972467789997566179988887878


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf             10139999999999999999986038862001000134445466536999999999999997258851489998143011
Q 537021.9.peg.3   81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAV  160 (208)
Q Consensus        81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~i~~~G~la~  160 (208)
                      ||+|.|||++++.++|+||++||+|+.++|+||+|+++++.++.++||++|+||||+|++|+.++++++|+|+|+|+++.
T Consensus       278 GasT~EAq~~va~~~a~~v~~~l~~~~~~~avN~p~~~~~~~~~~~pyl~Lae~lG~~~~ql~~~~~~~i~i~y~G~~~~  357 (524)
T PRK13581        278 GASTEEAQENVAIQVAEQVIDALLGGPVPNAVNLPSVTAEVAEKLKPYLELAEKLGSLAGQLTDGPIKKIEVTYRGELAD  357 (524)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf             76559999999999999999997589977426578788567787788999999999999987158973899999875233


Q ss_pred             CCCHHHHHHHHHHHHH-HCCCCCCEEEHHHHHHHCCEEEEEEEECCCC
Q ss_conf             1434789999999886-4067861677889999559089999603568
Q 537021.9.peg.3  161 MNTMVLNSAVLAGIVR-VWRVGANIISAPIIIKENAIILSTIKRDKSG  207 (208)
Q Consensus       161 ~~t~~l~~a~lkGlL~-~~~~~VN~VNA~~iA~erGI~v~e~~~~~sG  207 (208)
                      +++++|+.++|||+|+ ...++||||||+.+|+||||+|+|+++++++
T Consensus       358 ~~~~~lt~a~lkG~L~~~~~~~VN~VNA~~lAkerGI~v~e~k~~~~~  405 (524)
T PRK13581        358 YDTEPLTAAALKGLLSPVLGERVNYVNAPLLAKERGIEVEETKSEESG  405 (524)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEECCCCC
T ss_conf             442489999999987765225465002489999759469999757788


No 2  
>KOG0068 consensus
Probab=100.00  E-value=0  Score=341.70  Aligned_cols=195  Identities=36%  Similarity=0.557  Sum_probs=179.7

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC---CCHHHCCCCCHHH
Q ss_conf             9577984570755879998389980999848502214889763221356401432375311323---3201045420021
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL---QNPLFGLPNVFCA   77 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~---~~~l~~~~nvi~T   77 (208)
                      ||+||||+|++|+|+++|++||+|+++||+|||++|||.||++||+||+++|||+|||+.|||.   ++.|.+||||+.|
T Consensus       206 lH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~T  285 (406)
T KOG0068         206 LHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVT  285 (406)
T ss_pred             ECCCCCCCHHHCCCHHHHHHHHCCCEEEEECCCCEECHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHCCCCEEEC
T ss_conf             81678821431138789998607858998247752063999988852862433652156888864126787449853532


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEE
Q ss_conf             0201013999999999999999998603886200100013444546653699999999999999725885--14899981
Q 537021.9.peg.3   78 PYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESI--QEIQIIYD  155 (208)
Q Consensus        78 PHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~--~~I~i~~~  155 (208)
                      ||+|+||.|||.+++.++++++.+|+++ ....+||+|.++.+.+++.+||+-|+|+||+++.|+..+.-  ..+..+|.
T Consensus       286 pHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~  364 (406)
T KOG0068         286 PHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEVALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYK  364 (406)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH
T ss_conf             7656325989988899999999998525-764243024403434201462369999986450997517865035542012


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEHHHHHHHCCEE
Q ss_conf             430111434789999999886406-786167788999955908
Q 537021.9.peg.3  156 GSTAVMNTMVLNSAVLAGIVRVWR-VGANIISAPIIIKENAII  197 (208)
Q Consensus       156 G~la~~~t~~l~~a~lkGlL~~~~-~~VN~VNA~~iA~erGI~  197 (208)
                      - +...|+.++.+-+.+|+.+++. -.+|+|||+.++++||+.
T Consensus       365 s-~~~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~r~l~  406 (406)
T KOG0068         365 S-FSDGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQRGLY  406 (406)
T ss_pred             H-CCCCCEEEEHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCC
T ss_conf             2-03566123588775257225789988876242566652369


No 3  
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236    This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis. Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process.
Probab=100.00  E-value=1.5e-44  Score=298.97  Aligned_cols=206  Identities=42%  Similarity=0.666  Sum_probs=201.4

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----CCHHHCCCCCH
Q ss_conf             9577984570755879998389980999848502214889763221356401432375311323-----32010454200
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-----QNPLFGLPNVF   75 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-----~~~l~~~~nvi   75 (208)
                      +|+|+|++|+++++++.++++|+|.+++||+||+++||.+|+++++.|++.++++|||..||+.     ++|++.+++++
T Consensus       200 ~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~l~~~~~~g~~~~~~~d~~~~~p~~p~~~~~~~l~~~~~~~  279 (535)
T TIGR01327       200 LHTPLTPETKGLIGAEELAKLKPGVIIVNCARGGLIDEAALYEALEEGHVGGAALDVFEKEPPTPFIGEDNPLLDLDNVV  279 (535)
T ss_pred             EECCCCCHHHHHCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHEEEHHCCCCCCCCCCCCHHHHCCCCCE
T ss_conf             63366602332103256664047606985034663206889987631310010000000257754324410121022101


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             21020101399999999999999999860388620010001344454665369999999999999972588514899981
Q 537021.9.peg.3   76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYD  155 (208)
Q Consensus        76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~i~~~  155 (208)
                      .|||+|++|.|+|.+++..+++++.+++.|...++++|.|.++......++||+.|++++|.++.|+.++.+.++++.|+
T Consensus       280 ~~ph~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  359 (535)
T TIGR01327       280 LTPHLGASTEEAQENVGLDVAEEVLDALKGLPVPNAVNLPGLDPDVLEKLKPYLDLAEKLGKLAGQLLGGGVRKVEVTYR  359 (535)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             11344542146677778888999999860331000102566564556766678888887777887640453203677750


Q ss_pred             CCCCCCCCHHHHHHHHHHHHH-HCCCCCCEEEHHHHHHHCCEEEEEEEECCC
Q ss_conf             430111434789999999886-406786167788999955908999960356
Q 537021.9.peg.3  156 GSTAVMNTMVLNSAVLAGIVR-VWRVGANIISAPIIIKENAIILSTIKRDKS  206 (208)
Q Consensus       156 G~la~~~t~~l~~a~lkGlL~-~~~~~VN~VNA~~iA~erGI~v~e~~~~~s  206 (208)
                      |+++..++.+++.++++|+++ .+.+.+|++||+.++++|||.+.+.+.+++
T Consensus       360 g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  411 (535)
T TIGR01327       360 GELAELETEPLTRALLKGLLKPVLDDEVNLVNAPALAKERGITVEESKSESS  411 (535)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             4311100257889998877644311211000001233202522453011135


No 4  
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00  E-value=1.4e-45  Score=306.29  Aligned_cols=160  Identities=36%  Similarity=0.515  Sum_probs=137.4

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCC-----CHHHCCCCCH
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113233-----2010454200
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQ-----NPLFGLPNVF   75 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~-----~~l~~~~nvi   75 (208)
                      ||+|||++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||+|||+.||+..     +||+++|||+
T Consensus       209 lH~Plt~~T~~lIn~~~l~~MK~ga~LIN~ARG~iVDe~AL~~AL~~g~I~gAalDVf~~EP~~~~~~~~s~L~~~~NVi  288 (409)
T PRK11790        209 LHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVI  288 (409)
T ss_pred             ECCCCCHHHHCCCCHHHHHHCCCCCEEEECCCCHHCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCEE
T ss_conf             82679846631043999972699989998688510399999999973993089974789998987874324344499765


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHH-HHH---HHHHHHHHHHHHHHHHHCC--CCCE
Q ss_conf             210201013999999999999999998603886200100013444546-653---6999999999999997258--8514
Q 537021.9.peg.3   76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAP-LVK---PFMTLADHLGCFIGQLISE--SIQE  149 (208)
Q Consensus        76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~-~~~---pyl~LaekLG~l~~ql~~~--~~~~  149 (208)
                      +||||||||.|||+++|.++|+|+++||++|.+.|+||+|.++..... ..|   -+-....-||++...+.+.  .+..
T Consensus       289 lTPHiGasT~EAq~~~a~~~a~~l~~~l~~G~i~nsVN~P~~~~~~~~~~~Ri~~~h~N~Pg~l~~i~~~l~~~~~NI~~  368 (409)
T PRK11790        289 LTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNFPEVSLPEHPGGHRLLHIHENRPGVLTAINQIFAEQGINIAA  368 (409)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHH
T ss_conf             63877756699999999999999999996698114402477567778887069998079875899999999876999889


Q ss_pred             EEEEEECCCCC
Q ss_conf             89998143011
Q 537021.9.peg.3  150 IQIIYDGSTAV  160 (208)
Q Consensus       150 I~i~~~G~la~  160 (208)
                      ..-.-+|+++.
T Consensus       369 ~~n~s~~~~aY  379 (409)
T PRK11790        369 QYLQTDAEIGY  379 (409)
T ss_pred             HHHCCCCCEEE
T ss_conf             86206776549


No 5  
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00  E-value=8.6e-42  Score=281.91  Aligned_cols=118  Identities=48%  Similarity=0.758  Sum_probs=113.0

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-CCHHHCCCCCHHHCC
Q ss_conf             9577984570755879998389980999848502214889763221356401432375311323-320104542002102
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-QNPLFGLPNVFCAPY   79 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-~~~l~~~~nvi~TPH   79 (208)
                      +|+|+|++|+||||++.|++||+|++|||||||++|||+||++||++|+|+||+||||++||++ ++||+++|||++|||
T Consensus       203 lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPH  282 (324)
T COG0111         203 LHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPH  282 (324)
T ss_pred             ECCCCCCHHHCCCCHHHHHCCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHCCCCEEECCC
T ss_conf             83899812221379999944899819998887520358999999970983159970799999999974353998778774


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHH
Q ss_conf             01013999999999999999998603886200100013444
Q 537021.9.peg.3   80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE  120 (208)
Q Consensus        80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~  120 (208)
                      |||+|.|+|.+++.++++|+.+|++|+.+.|  |.|.++..
T Consensus       283 iag~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~v~~~  321 (324)
T COG0111         283 IGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPEVDLE  321 (324)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCC
T ss_conf             4666679999999999999999984898667--86646523


No 6  
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00  E-value=1.2e-41  Score=281.12  Aligned_cols=119  Identities=37%  Similarity=0.566  Sum_probs=115.3

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113233201045420021020
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL   80 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi   80 (208)
                      +|+|+|++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||||||++||.+++||+++|||++|||+
T Consensus       210 lh~Plt~eT~~li~~~~~~~MK~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~lDVf~~EP~~~~~L~~~~nvi~TPHi  289 (333)
T PRK13243        210 LAVPLTKETYHMINEERLKLMKKTAILVNIARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLAPHI  289 (333)
T ss_pred             ECCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCEEECCCC
T ss_conf             42558601346136999971799819998588400399999999980991389984799999999357659999998844


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCH
Q ss_conf             101399999999999999999860388620010001344
Q 537021.9.peg.3   81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISF  119 (208)
Q Consensus        81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~  119 (208)
                      |++|.|++.+++..+++|+.+||+|+.+.|+||.+.+..
T Consensus       290 a~~T~ea~~~~~~~~~~ni~~~l~G~~p~~~VN~e~~~~  328 (333)
T PRK13243        290 GSATFEAREGMAELVAENLIAFKRGEVPPTLVNREVVKV  328 (333)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCC
T ss_conf             415499999999999999999986999998619889555


No 7  
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00  E-value=1.9e-40  Score=273.49  Aligned_cols=113  Identities=27%  Similarity=0.446  Sum_probs=108.3

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC--C-C-----------C
Q ss_conf             957798457075587999838998099984850221488976322135640143237531132--3-3-----------2
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA--L-Q-----------N   66 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~--~-~-----------~   66 (208)
                      ||+|||++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||||||+.|||  + +           .
T Consensus       206 lh~Plt~~T~~lI~~~~l~~MK~~a~lINtaRG~iVde~aL~~AL~~g~I~gAalDVfe~Epp~~p~~~~~~~~~~~~~~  285 (332)
T PRK08605        206 LHMPATKYNTYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGKTINDPLLE  285 (332)
T ss_pred             EECCCCHHHHHHCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             93368835501218999972247968999068653389999999981981289985377788878654333456777789


Q ss_pred             HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             01045420021020101399999999999999999860388620010
Q 537021.9.peg.3   67 PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN  113 (208)
Q Consensus        67 ~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN  113 (208)
                      +|+++|||++|||+|++|.||+.+++.++++|+.+||+||.++|.||
T Consensus       286 ~L~~~~NvilTPHig~~T~ea~~~m~~~a~~ni~~~l~~g~~~~~VN  332 (332)
T PRK08605        286 SLINREDVILTPHIAFYTDAAVKNLIVDALDATVEVLQTGTTRLRVN  332 (332)
T ss_pred             HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             87069999988921004899999999999999999982799646719


No 8  
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00  E-value=1.2e-39  Score=268.61  Aligned_cols=113  Identities=21%  Similarity=0.365  Sum_probs=108.6

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----------C---C
Q ss_conf             9577984570755879998389980999848502214889763221356401432375311323-----------3---2
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-----------Q---N   66 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-----------~---~   66 (208)
                      ||+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||+.           +   .
T Consensus       204 lh~Plt~~T~~lIn~~~l~~MK~~ailINtaRG~iVde~aL~~AL~~g~I~gAgLDV~e~EP~~~~~d~~~~~~~d~~~~  283 (330)
T PRK12480        204 LHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLL  283 (330)
T ss_pred             ECCCCCHHHHCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             73768533120048999975799976997278633199999999975984589985588899864444444455774568


Q ss_pred             HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             01045420021020101399999999999999999860388620010
Q 537021.9.peg.3   67 PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN  113 (208)
Q Consensus        67 ~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN  113 (208)
                      +|+++|||++|||+|++|.||+.+++..+++|+.+||++|.+.|.||
T Consensus       284 ~L~~~~NVilTPHia~~T~ea~~~m~~~a~~ni~~~l~~g~~~~~vN  330 (330)
T PRK12480        284 ELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             87359999998846557899999999999999999983799888879


No 9  
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00  E-value=4.3e-39  Score=265.00  Aligned_cols=112  Identities=28%  Similarity=0.479  Sum_probs=108.3

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113-23320104542002102
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY   79 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH   79 (208)
                      ||+|||++|+||||++.|++||+|++|||||||+||||+||++||++|+|+|||+|||+.|| |.||||+.+||+++|||
T Consensus       254 lh~PLt~eT~~Lin~~~l~~MK~ga~LVNtARG~iVDe~AL~~AL~sG~i~gaglDV~~~EP~p~dhPl~~lpNv~lTPH  333 (385)
T PRK07574        254 IHCPLHPETEHLFDKDVLSRMKRGSYLVNTARGKIVDRDAVVEALESGHLAGYAGDVWFPQPAPADHPWRTMPRNAMTPH  333 (385)
T ss_pred             ECCCCCHHHHHHCCHHHHHCCCCCCEEEECCCCHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHCCCCCEECCC
T ss_conf             86679857740102999943899818998886110199999999972980499967899889989980222996168885


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             010139999999999999999986038862001
Q 537021.9.peg.3   80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL  112 (208)
Q Consensus        80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v  112 (208)
                      ++|+|.|||.|++..+.+++.+||+|++.+...
T Consensus       334 iaG~t~~Aq~R~a~g~~~~l~~~~~g~p~r~~~  366 (385)
T PRK07574        334 ISGTTLSAQARYAAGTREILECFFEGRPIRDEY  366 (385)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             454869999999998999999996599999741


No 10 
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00  E-value=2.4e-38  Score=260.39  Aligned_cols=112  Identities=37%  Similarity=0.618  Sum_probs=107.0

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHH--CCCCCHHH
Q ss_conf             957798457075587999838998099984850221488976322135640143237531132-332010--45420021
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLF--GLPNVFCA   77 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~--~~~nvi~T   77 (208)
                      +|+|||++|+||||++.|++||++++|||+|||++|||+||++||++|+|+|||||||+.||+ .++||+  ++|||++|
T Consensus       203 lh~Plt~~T~~li~~~~l~~Mk~~a~lIN~aRG~lVde~aL~~AL~~g~i~gAalDV~~~EP~~~~~pl~~~~~pNvilT  282 (317)
T PRK06487        203 LHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVT  282 (317)
T ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEEC
T ss_conf             73357611211579999985389978997068654699999999984994189995899989999993453799989986


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             020101399999999999999999860388620010
Q 537021.9.peg.3   78 PYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN  113 (208)
Q Consensus        78 PHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN  113 (208)
                      ||+|+.|.|++.+++..+++|+.+||+|+ |.|.||
T Consensus       283 PHia~~t~ea~~~~~~~~~~ni~~fl~G~-P~n~VN  317 (317)
T PRK06487        283 PHSAWGSREARQRIVGQLAENARAFFAGQ-PRRVVS  317 (317)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCCCC
T ss_conf             85350609999999999999999998799-988889


No 11 
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00  E-value=4.9e-38  Score=258.42  Aligned_cols=107  Identities=36%  Similarity=0.619  Sum_probs=103.1

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHH----CCCCCH
Q ss_conf             957798457075587999838998099984850221488976322135640143237531132-332010----454200
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLF----GLPNVF   75 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~----~~~nvi   75 (208)
                      +|||||++|+||||++.|++||++++|||+|||++|||+||++||++|+|+|||||||++||+ .++||+    ++|||+
T Consensus       203 lh~Plt~eT~~li~~~~l~~MK~~a~lIN~aRG~iVde~aL~~AL~~g~I~gA~lDV~~~EP~~~~~pl~~~~~~~~Nvi  282 (314)
T PRK06932        203 LHCPLTESTQNLINAETLALMKPTAFLINTGRGPLVDEQALVDALETGHIAGAALDVLVKEPPEKDNPLIQAAKTLPNLI  282 (314)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEE
T ss_conf             95113010233666999735788719998267554499999999982990289972799999988984567636799899


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             21020101399999999999999999860388
Q 537021.9.peg.3   76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGV  107 (208)
Q Consensus        76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~  107 (208)
                      +|||+|++|.||+++++..+++|+.+||++|.
T Consensus       283 lTPHia~~T~ea~~~~~~~~~~Ni~~fl~~gK  314 (314)
T PRK06932        283 ITPHIAWASDSAVTTLVNKVMQNIEEFVQQGK  314 (314)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             87832225799999999999999999997097


No 12 
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00  E-value=8.9e-37  Score=250.53  Aligned_cols=114  Identities=43%  Similarity=0.702  Sum_probs=110.5

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHHCCCC---CHH
Q ss_conf             957798457075587999838998099984850221488976322135640143237531132-3320104542---002
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLFGLPN---VFC   76 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~~~~n---vi~   76 (208)
                      ||||||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||+|||+.||. .++||+.++|   |++
T Consensus       206 l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvl  285 (324)
T COG1052         206 LHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVL  285 (324)
T ss_pred             EECCCCHHHHHHCCHHHHHHCCCCEEEEECCCCCEECHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf             97799837665329999975689769996487421659999999980974226701167888778806763668998797


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf             10201013999999999999999998603886200100
Q 537021.9.peg.3   77 APYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM  114 (208)
Q Consensus        77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~  114 (208)
                      |||+|+.|.|++.+++..+++|+.+|++|+.+++.||.
T Consensus       286 tPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~v~~  323 (324)
T COG1052         286 TPHIASATEEARKAMAELALENLEAFFDGGVPPNEVNP  323 (324)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             04413020999999999999999999808999877788


No 13 
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00  E-value=1.5e-36  Score=249.07  Aligned_cols=106  Identities=33%  Similarity=0.622  Sum_probs=101.6

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCC---CCCHH
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113-233201045---42002
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGL---PNVFC   76 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~---~nvi~   76 (208)
                      +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+| |||||||+.|| +.++||+++   +||++
T Consensus       202 lh~Plt~~T~~li~~~~l~~Mk~~a~lIN~aRG~iVde~aL~~aL~~~~i-gaalDV~~~EP~~~~~pl~~l~~~~nvi~  280 (311)
T PRK08410        202 IHAPLNEKTKNLINYEELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YAALDVLEIEPMEKNHPLLNIKNKEKLLI  280 (311)
T ss_pred             EECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCC-EEEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf             53357622234012899963045755999257422599999999975995-89998999999999984554678996899


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             1020101399999999999999999860388
Q 537021.9.peg.3   77 APYLGASTVESQEKVAIQLAHQMSDYLIDGV  107 (208)
Q Consensus        77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~  107 (208)
                      |||+|++|.|++.+++..+++||.+|++||.
T Consensus       281 TPHia~~T~ea~~~~~~~~~~ni~~fl~Ggk  311 (311)
T PRK08410        281 TPHIAWASKEARKTLVEKVKENIKDFLEGGK  311 (311)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             0843217799999999999999999982799


No 14 
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00  E-value=1.4e-35  Score=242.97  Aligned_cols=111  Identities=23%  Similarity=0.349  Sum_probs=102.3

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113233201045420021020
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL   80 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi   80 (208)
                      +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+++||++|||+.||++...  .+|||++|||+
T Consensus       179 lh~Plt~~T~~lI~~~~l~~MK~~a~lIN~aRG~iVde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~--~l~NVilTPHi  256 (303)
T PRK06436        179 ISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHV  256 (303)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEECHHHHHHHHHHCCCEEEEECCCCCCCCCCCC--CCCCEEECCCC
T ss_conf             9257865567776899998569997899927865468999999998199659996799999899878--99988999946


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf             1-013999999999999999998603886200100
Q 537021.9.peg.3   81 G-ASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM  114 (208)
Q Consensus        81 g-a~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~  114 (208)
                      + ++|.|+++++...+++|+.+|++|+ |+|.||-
T Consensus       257 Ag~~t~e~~~~~~~~a~~Ni~~fl~Gk-P~n~Vn~  290 (303)
T PRK06436        257 AGGMSGEIMQPAVALAFENIKNFFEGK-PKNIVRK  290 (303)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEECH
T ss_conf             645799999999999999999998799-9802877


No 15 
>KOG0069 consensus
Probab=100.00  E-value=1.1e-33  Score=231.19  Aligned_cols=113  Identities=37%  Similarity=0.655  Sum_probs=110.6

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113233201045420021020
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL   80 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi   80 (208)
                      +|||||++|+|+||++.|.+||+|++|||+|||+++||+++++||+||+|++||||||++||+.++||+.++||++|||+
T Consensus       223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi  302 (336)
T KOG0069         223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI  302 (336)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCC
T ss_conf             92689778887760999986479769996464240259999978753985322465467789988201023660672312


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             101399999999999999999860388620010
Q 537021.9.peg.3   81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALN  113 (208)
Q Consensus        81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN  113 (208)
                      |+.|.++|.+++..++.++.+++.|++..+.++
T Consensus       303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069         303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             557499999999999999998872688778677


No 16 
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.97  E-value=1.6e-31  Score=217.68  Aligned_cols=111  Identities=28%  Similarity=0.437  Sum_probs=104.1

Q ss_pred             CCCCCCHH----HHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHH
Q ss_conf             95779845----70755879998389980999848502214889763221356401432375311323320104542002
Q 537021.9.peg.3    1 LHVPLTNK----TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFC   76 (208)
Q Consensus         1 lH~Plt~~----T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~   76 (208)
                      +|+|||++    |+||||++.|++||+|++|||+|||+||||+||+++|++|++.+|+||||++||..+.+|+++ +.+.
T Consensus       173 lHvPLt~~g~~~T~~Li~~~~L~~mk~~aiLINtsRG~VVDe~ALl~aL~~g~~~~a~LDVwe~EP~i~~~Ll~~-~~ia  251 (379)
T PRK00257        173 LHTPLTKEGEHPTWHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIA  251 (379)
T ss_pred             EECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHC-CCEE
T ss_conf             925777788753204719999960799809998897300199999999981996368864356799989889845-8786


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             102010139999999999999999986038862001
Q 537021.9.peg.3   77 APYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL  112 (208)
Q Consensus        77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v  112 (208)
                      ||||||+|.|++.|...++.+.+.+||.-.......
T Consensus       252 TPHIAGyS~egK~rgT~m~~~a~c~~~~~~~~~~~~  287 (379)
T PRK00257        252 TPHIAGYSLDGKARGTAQIYQALCRFFGIEARVSLT  287 (379)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             781345678899879999999999984898543212


No 17 
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=99.96  E-value=8.4e-30  Score=206.91  Aligned_cols=81  Identities=51%  Similarity=0.835  Sum_probs=78.8

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113-23320104542002102
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY   79 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH   79 (208)
                      +|+|+|++|++|||++.|++||++++|||+|||++|||+||+++|++|+++|||||||+.|| +.++||+++|||++|||
T Consensus        95 ~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~l~~~~nvi~TPH  174 (176)
T pfam02826        95 LHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPH  174 (176)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC
T ss_conf             54767420246346999985189988998067551289999999980991589984699999999983770999897384


Q ss_pred             CC
Q ss_conf             01
Q 537021.9.peg.3   80 LG   81 (208)
Q Consensus        80 ig   81 (208)
                      ++
T Consensus       175 iA  176 (176)
T pfam02826       175 IA  176 (176)
T ss_pred             CC
T ss_conf             79


No 18 
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=99.95  E-value=1.6e-28  Score=198.85  Aligned_cols=112  Identities=33%  Similarity=0.435  Sum_probs=103.6

Q ss_pred             CCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHHCCCCCHHHCCC
Q ss_conf             57798457075587999838998099984850221488976322135640143237531132-33201045420021020
Q 537021.9.peg.3    2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLFGLPNVFCAPYL   80 (208)
Q Consensus         2 H~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~~~~nvi~TPHi   80 (208)
                      |+|++++|+++++.+.|.+||+++++||.+||+++++++++.++.++++.+|++|||+.||+ .++||+++|||++|||+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~~v~~~~ll~~l~~~~~~~a~~dv~~~ep~~~~~~L~~~~nvi~TPHi  280 (313)
T pfam00389       201 LAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHI  280 (313)
T ss_pred             ECCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCEEECCCH
T ss_conf             47999865577116889845699628983378741639999998528765089997987799998747749899988946


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             101399999999999999999860388620010
Q 537021.9.peg.3   81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALN  113 (208)
Q Consensus        81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN  113 (208)
                      |++|.|++.+++..+++|+.+||+|+.+.|+||
T Consensus       281 a~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~VN  313 (313)
T pfam00389       281 AGATEEAQENMAEEAAENLLAFLKGGTPPNAVN  313 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             564899999999999999999986999988829


No 19 
>KOG0067 consensus
Probab=99.36  E-value=6.7e-13  Score=101.20  Aligned_cols=109  Identities=28%  Similarity=0.448  Sum_probs=96.6

Q ss_pred             CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC
Q ss_conf             95779845707558799983899809998485022148897632213564014323753113233201045420021020
Q 537021.9.peg.3    1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL   80 (208)
Q Consensus         1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi   80 (208)
                      +|+-+++.++++||.-.+++|++|++++|+|||+++||.+|.++|+.|++.+++=.-     ....||.+-||.+++||-
T Consensus       239 ~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa~~~-----~~~~~l~d~pn~ic~~~t  313 (435)
T KOG0067         239 LHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAAPRS-----FKQGPLKDAPNLICTPHT  313 (435)
T ss_pred             EECCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHCCCCEECCCCCC-----CCCCCCCCCCCCCCCCCC
T ss_conf             212567001343034540032146557640345567858897430368440146765-----223444578887788653


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHC
Q ss_conf             1013999999999999999998603886---200100
Q 537021.9.peg.3   81 GASTVESQEKVAIQLAHQMSDYLIDGVV---SNALNM  114 (208)
Q Consensus        81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~---~~~vN~  114 (208)
                      ++.+.-+....-..++..++....|..+   +|.||-
T Consensus       314 a~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk  350 (435)
T KOG0067         314 AWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNK  350 (435)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             0134788899988876655512577770267777755


No 20 
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=93.60  E-value=0.33  Score=28.03  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=68.8

Q ss_pred             CCCCHHHHCCCCHHHHHHCCCCEEEEECC-----------CCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCC----CH
Q ss_conf             77984570755879998389980999848-----------5022148897632213564014323753113233----20
Q 537021.9.peg.3    3 VPLTNKTKNILNKENLSKTKSGVCIINCA-----------RGGLVDENALAELLQSGHVAEAGFDVFEVEPALQ----NP   67 (208)
Q Consensus         3 ~Plt~~T~~li~~~~l~~mk~g~~lIN~a-----------RG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~----~~   67 (208)
                      +|+.|..+.-+=.+.+++-+-.++|||++           |=.|-...+++.|.-+|.+..+.   |...|...    ..
T Consensus       413 lp~~p~~Ya~lL~~ki~~~~~~~~LvNTGW~gG~yg~~G~R~~l~~TRaii~a~l~g~l~~~~---~~~~p~F~l~iP~~  489 (543)
T PTZ00311        413 LALHPTVYANMLAEKMKKHNTRVWLLNTGWIGGSYGSGGKRMPLKYTRAIIDAIHDGELDKAE---YEKFPIFNLQIPKR  489 (543)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCC---EEECCCCCCCCCCC
T ss_conf             667989999999999997399889995786678889884173059999999998569645785---16777557026676


Q ss_pred             HHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1045420021020101399999999999999999860
Q 537021.9.peg.3   68 LFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLI  104 (208)
Q Consensus        68 l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~  104 (208)
                      +-+.|.-++.|...+...++.+..+...|+...+=|+
T Consensus       490 ~~gVp~~iL~Pr~tW~d~~~yd~~a~~La~~F~~NF~  526 (543)
T PTZ00311        490 CEGVPSELLDPRNTWKDKEEFDKQLKELAAKFQKNFK  526 (543)
T ss_pred             CCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999847669856069989999999999999999999


No 21 
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643   L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine. The enzyme forms a heterooctamer of four alpha chains and four beta chains.   This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis.
Probab=92.90  E-value=0.068  Score=32.34  Aligned_cols=75  Identities=15%  Similarity=0.058  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH-HHHHHHHHH--HCCCCCCEEEHHHHHHHCCEEEEEEEEC
Q ss_conf             9999999999999972588514899981430111434789-999999886--4067861677889999559089999603
Q 537021.9.peg.3  128 FMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLN-SAVLAGIVR--VWRVGANIISAPIIIKENAIILSTIKRD  204 (208)
Q Consensus       128 yl~LaekLG~l~~ql~~~~~~~I~i~~~G~la~~~t~~l~-~a~lkGlL~--~~~~~VN~VNA~~iA~erGI~v~e~~~~  204 (208)
                      +-.=|-|+|+++..+....+++|.+.++|.+|+.....=| .|++-|+|.  +.+|++  =-|-.+|++.||.+.-...+
T Consensus        21 HTAGA~~I~~VA~S~~~~~~~~~~~~l~GSFA~TyKGHGTD~A~~GG~L~F~~~D~RI--KT~~~~A~~~G~~~~F~~~~   98 (208)
T TIGR00719        21 HTAGAAKIARVARSLVSREYERVIVSLYGSFAETYKGHGTDVALVGGLLDFDTDDDRI--KTAIELAKAKGLDIIFRVED   98 (208)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCEEEECCCCCCCCCCHHH--HHHHHHHHHCCCCEEEEEEC
T ss_conf             2467766866543321488567999986052321367674535772303779863157--88899998539827998502


No 22 
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=88.11  E-value=2.3  Score=22.81  Aligned_cols=39  Identities=18%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             HHHHCCCCHHHHHHCCCCEEEEECCCCHHC---------CHHHHHHHHCCC
Q ss_conf             457075587999838998099984850221---------488976322135
Q 537021.9.peg.3    7 NKTKNILNKENLSKTKSGVCIINCARGGLV---------DENALAELLQSG   48 (208)
Q Consensus         7 ~~T~~li~~~~l~~mk~g~~lIN~aRG~iv---------de~aL~~aL~~g   48 (208)
                      +-.|.||+.++-....+|+.  |.- ||..         .|..+++|++-|
T Consensus       228 Dp~r~LIGDDEhgW~d~Gvf--N~E-gGCYAK~i~Ls~e~EP~I~~Ai~fg  275 (508)
T cd00484         228 DPNRKLIGDDEHGWSDRGVF--NIE-GGCYAKCINLSEEKEPEIYNAIKFG  275 (508)
T ss_pred             CCCCCCCCCCEEEECCCCEE--CCC-CCEEEEECCCCCCCCHHHHHHHCCC
T ss_conf             89874026742443588773--255-6504320468845255799875226


No 23 
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=87.93  E-value=2.3  Score=22.74  Aligned_cols=12  Identities=0%  Similarity=0.241  Sum_probs=4.9

Q ss_pred             HCCCCHHHHHHC
Q ss_conf             075587999838
Q 537021.9.peg.3   10 KNILNKENLSKT   21 (208)
Q Consensus        10 ~~li~~~~l~~m   21 (208)
                      |.||+.++...-
T Consensus       245 r~LIGDDehgWs  256 (525)
T PRK09344        245 RKLIGDDEHGWD  256 (525)
T ss_pred             CCEECCCCCCCC
T ss_conf             852247644316


No 24 
>pfam03315 SDH_beta Serine dehydratase beta chain. L-serine dehydratase (EC:4.2.1.13) is a found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate. This enzyme is part of the gluconeogenesis pathway.
Probab=81.64  E-value=2.7  Score=22.37  Aligned_cols=55  Identities=16%  Similarity=0.129  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHCC---CCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCCCEEEHH
Q ss_conf             999999997258---8514899981430111434789-999999886406786167788
Q 537021.9.peg.3  134 HLGCFIGQLISE---SIQEIQIIYDGSTAVMNTMVLN-SAVLAGIVRVWRVGANIISAP  188 (208)
Q Consensus       134 kLG~l~~ql~~~---~~~~I~i~~~G~la~~~t~~l~-~a~lkGlL~~~~~~VN~VNA~  188 (208)
                      |.|....+...+   .+.+|+++.+|.++.....--| .|++.||+....+.++.-.++
T Consensus        15 rAa~~f~~~l~~~l~~~~~v~v~LyGSLa~TGkGHgTD~Av~~GL~G~~p~~~~~~~~~   73 (148)
T pfam03315        15 RAARRFRDLLRGQLPRVARVEVELYGSLALTGKGHGTDRAVILGLLGFDPDDVDIDSIE   73 (148)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEECCHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHH
T ss_conf             99999999850304785399999864036528875643999841048884546833468


No 25 
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP  or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity.  PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=75.58  E-value=6.9  Score=19.80  Aligned_cols=24  Identities=13%  Similarity=-0.069  Sum_probs=12.2

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             347899999998864067861677
Q 537021.9.peg.3  163 TMVLNSAVLAGIVRVWRVGANIIS  186 (208)
Q Consensus       163 t~~l~~a~lkGlL~~~~~~VN~VN  186 (208)
                      .-..+++++.-+|+...+.+.++.
T Consensus       430 ~~~~tr~ii~ail~g~l~~~~~~~  453 (515)
T cd01919         430 GFGETRAIIDAIFNGILDKAETKL  453 (515)
T ss_pred             CHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             857999999999659636778288


No 26 
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases,  AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.79  E-value=5.6  Score=20.37  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=18.5

Q ss_pred             CCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCC
Q ss_conf             984570755879998389980999848502214889763221356
Q 537021.9.peg.3    5 LTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGH   49 (208)
Q Consensus         5 lt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~   49 (208)
                      +|++|-.++  ++|+..  |+-+.=|+-...--+++...+|.+.-
T Consensus        45 le~kTA~L~--~tL~~~--GA~V~~~~~NplSTQDdvaAaL~~~g   85 (413)
T cd00401          45 MTVQTAVLI--ETLVAL--GAEVRWSSCNIFSTQDHAAAAIAAAG   85 (413)
T ss_pred             CHHHHHHHH--HHHHHC--CCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf             058899999--999985--99899963797653289999999679


No 27 
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=64.27  E-value=5.2  Score=20.57  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=24.7

Q ss_pred             HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHH
Q ss_conf             707558799983899809998485022-1488976
Q 537021.9.peg.3    9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALA   42 (208)
Q Consensus         9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~   42 (208)
                      .++.|+.+.|..||+|+++-|+.--.. ||-++|.
T Consensus        88 ~~~vi~~eh~~~mKdgaIlaN~GHfd~EIdv~~L~  122 (162)
T pfam00670        88 NKDIITGEHMAKMKNDAIVCNIGHFDNEIDVAWLN  122 (162)
T ss_pred             CCCCCCHHHHHHHCCCEEEECCCCCCCEEEHHHHH
T ss_conf             97747399999844886998777565227288885


No 28 
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=63.27  E-value=5.8  Score=20.28  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHH
Q ss_conf             707558799983899809998485022-14889763
Q 537021.9.peg.3    9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALAE   43 (208)
Q Consensus         9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~   43 (208)
                      .++.|+.+.|.+||+|+++-|+.--.+ ||-.+|.+
T Consensus       273 ~~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  308 (427)
T PRK05476        273 NKDVITAEHMEAMKDGAIVCNIGHFDNEIDVAALEE  308 (427)
T ss_pred             CCCCCCHHHHHHHCCCEEEECCCCCCCEEEHHHHHH
T ss_conf             957248999985078829976777750432887752


No 29 
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=62.78  E-value=5.4  Score=20.44  Aligned_cols=25  Identities=32%  Similarity=0.272  Sum_probs=13.1

Q ss_pred             CHHCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf             02214889763221356401432375
Q 537021.9.peg.3   33 GGLVDENALAELLQSGHVAEAGFDVF   58 (208)
Q Consensus        33 G~ivde~aL~~aL~~g~i~~aalDV~   58 (208)
                      +|++...|..-|..-|-.- ..+|++
T Consensus        28 ~Gv~G~~A~~~A~~lGa~V-~v~D~~   52 (150)
T pfam01262        28 GGVVGLGAAATAKGLGAPV-TILDVR   52 (150)
T ss_pred             CCHHHHHHHHHHHHCCCEE-EEEECC
T ss_conf             8789999999998679989-997299


No 30 
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=62.17  E-value=6.1  Score=20.10  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHH
Q ss_conf             707558799983899809998485022-14889763
Q 537021.9.peg.3    9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALAE   43 (208)
Q Consensus         9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~   43 (208)
                      .++.|..+.|.+||+|+++-|++--.+ ||-.+|.+
T Consensus       319 n~~VI~~~H~~~MKdgaIl~N~GHfd~EId~~~L~~  354 (476)
T PTZ00075        319 NDDIITLEHFPRMKDDAIVGNIGHFDTEIQVAWLKA  354 (476)
T ss_pred             CCCCCCHHHHHHHCCCEEEEECCCCCHHEEHHHHHH
T ss_conf             977468999986537809994587841040898873


No 31 
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.38  E-value=6.6  Score=19.90  Aligned_cols=43  Identities=12%  Similarity=0.237  Sum_probs=28.8

Q ss_pred             CHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf             879998389980999848502214889763221356401432375
Q 537021.9.peg.3   14 NKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVF   58 (208)
Q Consensus        14 ~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~   58 (208)
                      ..+++++||+|.++|-.--  .-....|.++|.+.++...++|..
T Consensus        76 ~~~E~~~lr~g~~Lis~L~--pa~~~el~~~L~~~~vtaiA~E~V  118 (510)
T PRK09424         76 TDDEIALLREGATLVSFIW--PAQNPELMEKLAARGITVLAMDSV  118 (510)
T ss_pred             CHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf             9899973479989999768--667989999999759928975223


No 32 
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=61.09  E-value=7.3  Score=19.63  Aligned_cols=24  Identities=13%  Similarity=0.198  Sum_probs=13.1

Q ss_pred             HHCCCCHHHHHHCCCCEEEEECCC
Q ss_conf             707558799983899809998485
Q 537021.9.peg.3    9 TKNILNKENLSKTKSGVCIINCAR   32 (208)
Q Consensus         9 T~~li~~~~l~~mk~g~~lIN~aR   32 (208)
                      .++.|+.+.|.+||+|+++-|++-
T Consensus       275 ~~~vI~~~H~~~MKdgaIl~N~GH  298 (430)
T pfam05221       275 CVDIIVGRHFMNMKKDAIVCNIGH  298 (430)
T ss_pred             CCCCCCHHHHHHHCCCEEEEECCC
T ss_conf             887568999986417849995688


No 33 
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein  of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=52.46  E-value=9.8  Score=18.84  Aligned_cols=128  Identities=20%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHHHHCCCCCCEEEECCCCCCC------CCCCHHHC------CCCCH
Q ss_conf             707558799983899809998485022-148897632213564014323753113------23320104------54200
Q 537021.9.peg.3    9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEVEP------ALQNPLFG------LPNVF   75 (208)
Q Consensus         9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~aL~~g~i~~aalDV~~~EP------~~~~~l~~------~~nvi   75 (208)
                      .+++|..+.|..||+|+++-|.+-=.+ ||-.+|-+.-++.+--.--+|.|.-.-      ..+-+|++      ||-.+
T Consensus       276 ~~~vI~~~h~~~MkdgAI~aN~GHFdvEI~~~~Le~~a~~~~~~r~~v~~Y~L~dGr~i~lLaeGRLVNL~~a~GHP~~v  355 (422)
T TIGR00936       276 NKDVIREEHFEKMKDGAILANAGHFDVEIDVKALEELAKEKREVRPQVDEYKLKDGRRIYLLAEGRLVNLAAAEGHPSEV  355 (422)
T ss_pred             CCHHCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCEEEECCCCCCCHHH
T ss_conf             80103648885066772885357653111658998876677754201134463889789998277332300479596046


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             2102010139999999999999999986038862001000134445466536999999999999997258851489
Q 537021.9.peg.3   76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQ  151 (208)
Q Consensus        76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~  151 (208)
                      +     ..+.--|.-++..+.++     .++.-+.+-.+|.---+   .+. -+.| +.||.-..+|++.+.+=++
T Consensus       356 M-----d~SFa~QalA~~~l~~~-----~~~~e~~Vy~~P~~~D~---~vA-r~kL-~~lG~~i~~LT~~Q~~YL~  416 (422)
T TIGR00936       356 M-----DMSFANQALAAEYLLKN-----HDKLEPGVYRLPKELDE---MVA-RLKL-EALGIEIDELTEEQKKYLE  416 (422)
T ss_pred             H-----HHHHHHHHHHHHHHHHH-----CCCCCCCEEECHHHHHH---HHH-HHHH-HHHCCCHHHHHHHHHHHHC
T ss_conf             5-----20268999999999740-----13346020553188889---999-9999-9818343364599999835


No 34 
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=49.68  E-value=11  Score=18.61  Aligned_cols=105  Identities=18%  Similarity=0.287  Sum_probs=54.3

Q ss_pred             EEEEECCCCHH--CCHHHHHHHHCCCCCCEEEECCCC--------CCC-CCCCHHHCCCCCHHHC-CCCCCCHHHHHHHH
Q ss_conf             09998485022--148897632213564014323753--------113-2332010454200210-20101399999999
Q 537021.9.peg.3   25 VCIINCARGGL--VDENALAELLQSGHVAEAGFDVFE--------VEP-ALQNPLFGLPNVFCAP-YLGASTVESQEKVA   92 (208)
Q Consensus        25 ~~lIN~aRG~i--vde~aL~~aL~~g~i~~aalDV~~--------~EP-~~~~~l~~~~nvi~TP-Higa~T~ea~~~~a   92 (208)
                      -+||-..-|.=  ++.++-.+  .--+|-.-+-+||.        +|| +.+-+++....+++|= |++++-.-+     
T Consensus        32 eVlVe~gAG~gsg~~D~~Y~~--aGA~Iv~ta~~vw~~~dmvvKvKEP~~~EY~ylregqiLftyLHLA~~~~lt-----  104 (371)
T COG0686          32 EVLVETGAGAGSGFDDDDYEA--AGAKIVATAAEVWAEADMVVKVKEPLPSEYPYLREGQILFTYLHLAASPELT-----  104 (371)
T ss_pred             EEEEECCCCCCCCCCHHHHHH--CCCEEECCHHHHHCCCCEEEEECCCCHHHHHHHCCCCEEEEEEEECCCHHHH-----
T ss_conf             899965876778988278897--2887745888861102458995578802555523785899984005886899-----


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999860388620010001344454665369999999999999972
Q 537021.9.peg.3   93 IQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLI  143 (208)
Q Consensus        93 ~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~  143 (208)
                             ..+++.+...=+--.-..+...+|-+.|.=+.+.||+...++..
T Consensus       105 -------~~l~~~gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~  148 (371)
T COG0686         105 -------EALLKSGVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYY  148 (371)
T ss_pred             -------HHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -------99986586147899997389987523317888666777888999


No 35 
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=47.94  E-value=3.7  Score=21.45  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             CCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEEC-----CCCCCCCCCCHHHCCCCCHHHCCCCC
Q ss_conf             899809998485022148897632213564014323-----75311323320104542002102010
Q 537021.9.peg.3   21 TKSGVCIINCARGGLVDENALAELLQSGHVAEAGFD-----VFEVEPALQNPLFGLPNVFCAPYLGA   82 (208)
Q Consensus        21 mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalD-----V~~~EP~~~~~l~~~~nvi~TPHiga   82 (208)
                      -+..+++|=..-|---....+++.+..... -.-+|     .+..++..   +...+++|+|||.|=
T Consensus        76 ~~~~aiviGpGlg~~~~~~~~~~~~~~~~~-p~ViDAdaL~~l~~~~~~---~~~~~~~IlTPH~gE  138 (254)
T cd01171          76 ERADAVVIGPGLGRDEEAAEILEKALAKDK-PLVLDADALNLLADEPSL---IKRYGPVVLTPHPGE  138 (254)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CEEECCHHHHHHHHCHHH---HCCCCCEEECCCHHH
T ss_conf             358789982788999999999999984499-858863767866408354---425889787799899


No 36 
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=46.54  E-value=17  Score=17.35  Aligned_cols=44  Identities=27%  Similarity=0.461  Sum_probs=29.0

Q ss_pred             HHHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHHH-HCCCCCC
Q ss_conf             5707558799983899809998485022-148897632-2135640
Q 537021.9.peg.3    8 KTKNILNKENLSKTKSGVCIINCARGGL-VDENALAEL-LQSGHVA   51 (208)
Q Consensus         8 ~T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~a-L~~g~i~   51 (208)
                      -.++.|..+.|..||+|+++-|...=.+ ||-.+|.+. ++...+.
T Consensus       273 GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         273 GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             CCCCCCCHHHHHHCCCCEEEECCCCCCEEECHHHHHHHHHHHHHCC
T ss_conf             8857578999972648849962656400006888887545675104


No 37 
>pfam01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase.
Probab=46.06  E-value=21  Score=16.78  Aligned_cols=164  Identities=18%  Similarity=0.266  Sum_probs=70.6

Q ss_pred             HHCCCCHHHHHHCCCCEEEEECCCCHH---------CCHHHHHHHHCCCCC-CEEEECCCCCCCCCC-----------CH
Q ss_conf             707558799983899809998485022---------148897632213564-014323753113233-----------20
Q 537021.9.peg.3    9 TKNILNKENLSKTKSGVCIINCARGGL---------VDENALAELLQSGHV-AEAGFDVFEVEPALQ-----------NP   67 (208)
Q Consensus         9 T~~li~~~~l~~mk~g~~lIN~aRG~i---------vde~aL~~aL~~g~i-~~aalDV~~~EP~~~-----------~~   67 (208)
                      .|.||++++...-.+|+  .|.- ||.         -.|..+++|++-|-+ --..+|--..+|-.+           -|
T Consensus       231 ~R~LIGDDEhgW~~~Gv--fnfE-GGCYAK~i~Ls~e~EP~I~~Ai~~gavlENV~~d~~~~~~df~d~s~TeNtR~~yP  307 (451)
T pfam01293       231 NRRLIGDDEHGWSDNGV--FNFE-GGCYAKTINLSEEKEPEIYNAIRFGAVLENVVVDPETREVDFDDTSLTENTRVAYP  307 (451)
T ss_pred             CCEEECCCEEEECCCCE--EEEC-CCEEEEECCCCCCCCCHHHHHHCCCCEEHEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             86066276500268886--9945-86463104788334732998733131000057746888677778876663218968


Q ss_pred             HHCCCCCHHH-----C-CCCCCCHHHH---HHHHHHHHHHHHHHHCCCCCCCH------HHCCCCCHHHHHHHHHHHHHH
Q ss_conf             1045420021-----0-2010139999---99999999999998603886200------100013444546653699999
Q 537021.9.peg.3   68 LFGLPNVFCA-----P-YLGASTVESQ---EKVAIQLAHQMSDYLIDGVVSNA------LNMAIISFEEAPLVKPFMTLA  132 (208)
Q Consensus        68 l~~~~nvi~T-----P-Higa~T~ea~---~~~a~~~a~~i~~~l~~~~~~~~------vN~p~~~~~~~~~~~pyl~La  132 (208)
                      +-..+|...+     | +|=..|..|.   --+++...+|..-+|--|...-.      |.-|.-.. ....-.||+.+-
T Consensus       308 ~~~i~n~~~~~~~~~P~~IifLt~DafGVlPPvskLt~eQA~y~FlsGyTak~agtE~Gv~ep~~tf-s~cfg~pF~~~~  386 (451)
T pfam01293       308 IEHIPNAVEPGVGGHPKNIIFLTADAFGVLPPVSKLTPEQAMYHFLSGYTAKVAGTERGVTEPEATF-SACFGAPFLPLH  386 (451)
T ss_pred             HHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf             7775576675547898779999526667767233179999999987051002355556766778514-246687653688


Q ss_pred             -HHHHHHHHHHHCCCCCEEEEEEECCCC------CCCCHHHHHHHHHHHHH
Q ss_conf             -999999999725885148999814301------11434789999999886
Q 537021.9.peg.3  133 -DHLGCFIGQLISESIQEIQIIYDGSTA------VMNTMVLNSAVLAGIVR  176 (208)
Q Consensus       133 -ekLG~l~~ql~~~~~~~I~i~~~G~la------~~~t~~l~~a~lkGlL~  176 (208)
                       ..-+.++.+.....--++=+...|=..      +.-....|++.+..+|+
T Consensus       387 p~~ya~lL~~~i~~~~~~~~LvNTGw~Gg~yg~G~R~~l~~Tr~~i~ail~  437 (451)
T pfam01293       387 PTVYAELLGEKIKEHGVNVYLVNTGWTGGPYGVGKRMPIKYTRAIIDAILD  437 (451)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHC
T ss_conf             899999999999973997899947755778887546267999999999966


No 38 
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 .    Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=41.83  E-value=20  Score=16.91  Aligned_cols=39  Identities=18%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             CCCHHHHHHCCCCEEEEECCCCHHCCHHH-HHHHHCCCCC
Q ss_conf             55879998389980999848502214889-7632213564
Q 537021.9.peg.3   12 ILNKENLSKTKSGVCIINCARGGLVDENA-LAELLQSGHV   50 (208)
Q Consensus        12 li~~~~l~~mk~g~~lIN~aRG~ivde~a-L~~aL~~g~i   50 (208)
                      |++.+.++.+|+++-++|+|-=.+=+..+ +.++...||+
T Consensus        34 LV~~~~L~~~r~~Ae~~~sA~m~L~ei~~~m~~a~~~GK~   73 (252)
T TIGR01465        34 LVPPELLAHCRPGAEVVNSAAMSLEEIVDIMVDAVREGKL   73 (252)
T ss_pred             CCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCE
T ss_conf             7817899727898888605026988999999999866984


No 39 
>pfam09692 Arb1 Argonaute siRNA chaperone (ARC) complex subunit Arb1. Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast.
Probab=41.81  E-value=28  Score=15.98  Aligned_cols=72  Identities=25%  Similarity=0.399  Sum_probs=44.4

Q ss_pred             CHHCCHHHHHHHHCCCCCCEEEECCCC-CCC-CCCCHHHCCCCCHHH---CCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             022148897632213564014323753-113-233201045420021---02010139999999999999999986038
Q 537021.9.peg.3   33 GGLVDENALAELLQSGHVAEAGFDVFE-VEP-ALQNPLFGLPNVFCA---PYLGASTVESQEKVAIQLAHQMSDYLIDG  106 (208)
Q Consensus        33 G~ivde~aL~~aL~~g~i~~aalDV~~-~EP-~~~~~l~~~~nvi~T---PHiga~T~ea~~~~a~~~a~~i~~~l~~~  106 (208)
                      |+ +|+.+|.+.=++......|-|+-. .++ .++-.+-..-.-.+|   ||+++ ..|.+..++.++..|-..|+.--
T Consensus        82 Gg-~~~~dL~~~d~eei~~a~a~~~I~p~d~~~w~VDF~~Va~GFLS~~~p~~~~-~~~~~v~la~~tirNFL~Yvl~H  158 (392)
T pfam09692        82 GG-LDQRDLADLDSEEILAARATDSIQPDDPEHWDVDFEGVAKGFLSSHLPYYGL-EGEDMVKLACDTIRNFLNYVLYH  158 (392)
T ss_pred             CC-CCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88-9878887479989987541363276665566453688757764121011267-43899998899999999999861


No 40 
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=35.83  E-value=24  Score=16.35  Aligned_cols=26  Identities=12%  Similarity=0.013  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHCCCCCCCHHHCCCCCH
Q ss_conf             99999999860388620010001344
Q 537021.9.peg.3   94 QLAHQMSDYLIDGVVSNALNMAIISF  119 (208)
Q Consensus        94 ~~a~~i~~~l~~~~~~~~vN~p~~~~  119 (208)
                      ..+.-++..|.+..+++.+-...+++
T Consensus       103 ~La~~~La~fag~~Vpr~vraqlhdp  128 (356)
T COG3288         103 ALAIFVLAAFAGEAVPRIVRAQLHDP  128 (356)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHCCH
T ss_conf             99999999987764000354333337


No 41 
>TIGR01616 nitro_assoc nitrogenase-associated protein; InterPro: IPR006503    This set of sequences describe a small family of uncharacterised proteins only found so far in alpha and gamma proteobacteria and in the Cyanobacterium Nostoc sp. PCC 7120. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. .
Probab=33.70  E-value=16  Score=17.47  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=33.6

Q ss_pred             HHHHHHHHCCCCCCCHHH--CCCCCHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             999999860388620010--001344454665369-9999999999999
Q 537021.9.peg.3   96 AHQMSDYLIDGVVSNALN--MAIISFEEAPLVKPF-MTLADHLGCFIGQ  141 (208)
Q Consensus        96 a~~i~~~l~~~~~~~~vN--~p~~~~~~~~~~~py-l~LaekLG~l~~q  141 (208)
                      |+.++.||..+++....|  +|.+   ..-+++|| ++=++.|..|+..
T Consensus        40 A~~LRpyFg~kPV~~WfNraAPrv---KsGEV~p~s~de~sALalMvsD   85 (131)
T TIGR01616        40 ADTLRPYFGDKPVKEWFNRAAPRV---KSGEVRPDSLDEASALALMVSD   85 (131)
T ss_pred             HHHCCHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHCC
T ss_conf             122152231588201146567851---2245661003858899986303


No 42 
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=30.62  E-value=42  Score=14.86  Aligned_cols=82  Identities=15%  Similarity=0.106  Sum_probs=37.3

Q ss_pred             HHCCCC-EEEEECCCCHHCCHHHHHHHHCC--CCCCEEEECCCCCCCCCC--------------CHHHCCCCCHHHCCCC
Q ss_conf             838998-09998485022148897632213--564014323753113233--------------2010454200210201
Q 537021.9.peg.3   19 SKTKSG-VCIINCARGGLVDENALAELLQS--GHVAEAGFDVFEVEPALQ--------------NPLFGLPNVFCAPYLG   81 (208)
Q Consensus        19 ~~mk~g-~~lIN~aRG~ivde~aL~~aL~~--g~i~~aalDV~~~EP~~~--------------~~l~~~~nvi~TPHig   81 (208)
                      +.||.. .++|-.| || +|-..|..+..+  |+-.-|..=+++.-|.+.              |.+.+.+  .+.||..
T Consensus        12 ~~ik~~~kv~vAfS-GG-vDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~--~~~~~~~   87 (269)
T COG1606          12 KAIKEKKKVVVAFS-GG-VDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMN--RMDPEFK   87 (269)
T ss_pred             HHHHHCCEEEEEEC-CC-CCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEHH--HCCHHHC
T ss_conf             99864373999965-88-42799999999973564699997168777666067899999948762465500--0252330


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             01399999999999999999860
Q 537021.9.peg.3   82 ASTVESQEKVAIQLAHQMSDYLI  104 (208)
Q Consensus        82 a~T~ea~~~~a~~~a~~i~~~l~  104 (208)
                      +++.+-=.-|-..+-+-+...-.
T Consensus        88 ~n~~~rCY~CK~~v~~~l~~~a~  110 (269)
T COG1606          88 ENPENRCYLCKRAVYSTLVEEAE  110 (269)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             49987355778999999999999


No 43 
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=30.32  E-value=43  Score=14.83  Aligned_cols=12  Identities=17%  Similarity=0.268  Sum_probs=5.9

Q ss_pred             HHHCCCCCHHHH
Q ss_conf             010001344454
Q 537021.9.peg.3  111 ALNMAIISFEEA  122 (208)
Q Consensus       111 ~vN~p~~~~~~~  122 (208)
                      .|+...++++..
T Consensus        91 iid~sT~~p~~~  102 (163)
T pfam03446        91 IIDGSTISPDDT  102 (163)
T ss_pred             EEECCCCCHHHH
T ss_conf             986798999999


No 44 
>KOG0046 consensus
Probab=27.85  E-value=47  Score=14.60  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=28.2

Q ss_pred             CCCCHHHHCCCCHHHHHHCCCCEE---EEECCCCHHCCHHHHH
Q ss_conf             779845707558799983899809---9984850221488976
Q 537021.9.peg.3    3 VPLTNKTKNILNKENLSKTKSGVC---IINCARGGLVDENALA   42 (208)
Q Consensus         3 ~Plt~~T~~li~~~~l~~mk~g~~---lIN~aRG~ivde~aL~   42 (208)
                      +|.+|+|.     +.|..+|+|.+   +||.|--+.|||.|+-
T Consensus       142 lPinp~t~-----~lf~~vkDGvlLcKlIN~svPdTIDERaiN  179 (627)
T KOG0046         142 LPINPNTN-----DLFDLVKDGVLLCKLINLSVPDTIDERAIN  179 (627)
T ss_pred             CCCCCCHH-----HHHHHHCCCEEEEHHHCCCCCCCHHHHHHC
T ss_conf             88898667-----999986564542113245689852256634


No 45 
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase; InterPro: IPR005786   Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped  into subfamilies.   One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine.    Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process.
Probab=27.25  E-value=36  Score=15.32  Aligned_cols=129  Identities=19%  Similarity=0.220  Sum_probs=68.5

Q ss_pred             CHHHCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCCCCCHH--------------HHH-HHHHH
Q ss_conf             201045420021-02010139999999999999999986038-86200100013444--------------546-65369
Q 537021.9.peg.3   66 NPLFGLPNVFCA-PYLGASTVESQEKVAIQLAHQMSDYLIDG-VVSNALNMAIISFE--------------EAP-LVKPF  128 (208)
Q Consensus        66 ~~l~~~~nvi~T-PHiga~T~ea~~~~a~~~a~~i~~~l~~~-~~~~~vN~p~~~~~--------------~~~-~~~py  128 (208)
                      ..|.=.|-+|.| |-||=-+-.+.+-.-..+|-=+-+||++| ..+.+-+.=+.+-.              .+. .+. +
T Consensus        92 asLYLRPF~Igt~~~lGV~~a~se~~~f~~~~sPvG~YFk~Gq~~pgv~~~v~t~y~RAap~GtG~vK~GGNYAASLl-~  170 (329)
T TIGR01123        92 ASLYLRPFVIGTEPNLGVKAAPSEEYLFYVFASPVGAYFKGGQLAPGVSIFVETEYVRAAPGGTGAVKVGGNYAASLL-A  170 (329)
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECCCCEEEEECCHHHCCCCCCCEEECCHHHHHHHH-H
T ss_conf             651005656876576675378621035667660365300477016674378601111026889640441044788898-9


Q ss_pred             HHHHHHHH---H-HHHHHHC-----------CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
Q ss_conf             99999999---9-9999725-----------8851489998143011143478999999988640678616778899995
Q 537021.9.peg.3  129 MTLADHLG---C-FIGQLIS-----------ESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWRVGANIISAPIIIKE  193 (208)
Q Consensus       129 l~LaekLG---~-l~~ql~~-----------~~~~~I~i~~~G~la~~~t~~l~~a~lkGlL~~~~~~VN~VNA~~iA~e  193 (208)
                      ...+...|   + +..++.=           +..+-+-|.-.|.-+..-+.+++-++|.|+-+.        ....|||+
T Consensus       171 ~~~A~~~G~p~R~~~~~~~LDp~~~~~iEE~Ga~N~F~i~~DGgsa~~~t~~~S~SiL~giTR~--------S~L~lA~~  242 (329)
T TIGR01123       171 QKKAAEQGGPERDYDQVIYLDPVEHKYIEEVGAMNFFLITGDGGSAELVTPPLSGSILPGITRD--------SLLQLAKD  242 (329)
T ss_pred             HHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCHHHH--------HHHHHHHH
T ss_conf             9999863887766146777778998378863564378782479711445257784415424289--------99999997


Q ss_pred             -CCEEEEEEEE
Q ss_conf             -5908999960
Q 537021.9.peg.3  194 -NAIILSTIKR  203 (208)
Q Consensus       194 -rGI~v~e~~~  203 (208)
                       .|+.|+|.+-
T Consensus       243 ~~G~~V~Er~i  253 (329)
T TIGR01123       243 RLGLEVEERRI  253 (329)
T ss_pred             HCCCEEEECEE
T ss_conf             08964740400


No 46 
>PRK13937 phosphoheptose isomerase; Provisional
Probab=26.83  E-value=31  Score=15.70  Aligned_cols=30  Identities=13%  Similarity=0.114  Sum_probs=21.9

Q ss_pred             CCCCCCEEEHHHHHHHCCEEEEEEEECCCC
Q ss_conf             067861677889999559089999603568
Q 537021.9.peg.3  178 WRVGANIISAPIIIKENAIILSTIKRDKSG  207 (208)
Q Consensus       178 ~~~~VN~VNA~~iA~erGI~v~e~~~~~sG  207 (208)
                      .+..-|.++|-..|+++|+++--.+-.+.|
T Consensus       120 SGnS~Nii~A~~~A~~~g~~~i~ltG~~gg  149 (192)
T PRK13937        120 SGNSPNVLAALEKARELGMTTIGLTGRDGG  149 (192)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf             999979999999999879979999888960


No 47 
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=26.39  E-value=48  Score=14.51  Aligned_cols=153  Identities=10%  Similarity=0.011  Sum_probs=65.0

Q ss_pred             EEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC---C------CCCHHHCCCC-------CHHHCCCCCCCHHHHH
Q ss_conf             9998485022148897632213564014323753113---2------3320104542-------0021020101399999
Q 537021.9.peg.3   26 CIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP---A------LQNPLFGLPN-------VFCAPYLGASTVESQE   89 (208)
Q Consensus        26 ~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP---~------~~~~l~~~~n-------vi~TPHiga~T~ea~~   89 (208)
                      +++-.+.+..-.|...++.+-+.++-|..+.-...+.   .      ..-|+.-.++       ....+.+|..-.+   
T Consensus        32 l~~~~~~~d~~~q~~~i~~li~~~vDgIii~p~~~~~~~~~l~~a~~agIPvV~~d~~~~~~~~~~~~~~v~~Dn~~---  108 (273)
T cd06309          32 LKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRGVDVKDDSLYVTFIGSDFVE---  108 (273)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCHHH---
T ss_conf             99976999999999999999975999999805765435899999997499889982677678875147785277799---


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCHHHHH
Q ss_conf             99999999999986038862001000134445466536999999999999997258-85148999814301114347899
Q 537021.9.peg.3   90 KVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISE-SIQEIQIIYDGSTAVMNTMVLNS  168 (208)
Q Consensus        90 ~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~-~~~~I~i~~~G~la~~~t~~l~~  168 (208)
                       .+..+++.+.+.+.++.-.-.+..+.-....          -+|..-|...+... .++-+. ...|+..    ..-..
T Consensus       109 -~G~~aa~~l~~~~~~~~~i~~i~g~~~~~~~----------~~R~~Gf~~~l~~~~~~~iv~-~~~~~~~----~~~~~  172 (273)
T cd06309         109 -EGRRAADWLAKATGGKGNIVELQGTVGSSVA----------IDRKKGFAEVIKKYPNMKIVA-SQTGDFT----RAKGK  172 (273)
T ss_pred             -HHHHHHHHHHHHCCCCCEEEEEECCCCCHHH----------HHHHHHHHHHHHHCCCCEEEE-EECCCCC----HHHHH
T ss_conf             -9999999989844898079998289898599----------999999999998789986765-4123468----89999


Q ss_pred             HHHHHHHHHCCCCCCEE---E------HHHHHHHCCEE
Q ss_conf             99999886406786167---7------88999955908
Q 537021.9.peg.3  169 AVLAGIVRVWRVGANII---S------APIIIKENAII  197 (208)
Q Consensus       169 a~lkGlL~~~~~~VN~V---N------A~~iA~erGI~  197 (208)
                      ..++.+|.....+++.|   |      |-.-+++.|++
T Consensus       173 ~~~~~~L~~~p~~i~ai~~~nd~~a~Ga~~al~~~G~~  210 (273)
T cd06309         173 EVMEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKK  210 (273)
T ss_pred             HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCC
T ss_conf             99999997278888889867857999999999983999


No 48 
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=25.98  E-value=41  Score=14.93  Aligned_cols=18  Identities=22%  Similarity=0.209  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHCCCCC
Q ss_conf             999999999998603886
Q 537021.9.peg.3   91 VAIQLAHQMSDYLIDGVV  108 (208)
Q Consensus        91 ~a~~~a~~i~~~l~~~~~  108 (208)
                      -|..+|.+|...++++.-
T Consensus       144 ~Ay~~a~aVe~elr~g~~  161 (183)
T COG2306         144 KAYRTANAVEAELRNGKF  161 (183)
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999999999864876


No 49 
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.84  E-value=37  Score=15.26  Aligned_cols=29  Identities=24%  Similarity=0.295  Sum_probs=20.0

Q ss_pred             CCCCCEEEHHHHHHHCCEEEEEEEECCCC
Q ss_conf             67861677889999559089999603568
Q 537021.9.peg.3  179 RVGANIISAPIIIKENAIILSTIKRDKSG  207 (208)
Q Consensus       179 ~~~VN~VNA~~iA~erGI~v~e~~~~~sG  207 (208)
                      +..-|.++|-..|+++|+.+---+-.+.|
T Consensus       122 GnS~Nii~A~~~Ak~~g~~~i~ltG~~GG  150 (192)
T PRK00414        122 GNSGNIIKAIEAAREKGMKVITLTGKDGG  150 (192)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf             99999999999999889989999779961


No 50 
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.77  E-value=34  Score=15.49  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=22.9

Q ss_pred             HCCCCCCEEEHHHHHHHCCEEEEEEEECCCC
Q ss_conf             4067861677889999559089999603568
Q 537021.9.peg.3  177 VWRVGANIISAPIIIKENAIILSTIKRDKSG  207 (208)
Q Consensus       177 ~~~~~VN~VNA~~iA~erGI~v~e~~~~~sG  207 (208)
                      ..+...|.++|-..|++||+.+---+-.+.|
T Consensus       120 ~SGnS~Nii~A~~~A~~~g~~~i~ltG~dgg  150 (197)
T PRK13936        120 TSGNSANVIQAIQAAHEREMHVVALTGRDGG  150 (197)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf             9999989999999999859959999816853


No 51 
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237   This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=23.20  E-value=48  Score=14.51  Aligned_cols=100  Identities=22%  Similarity=0.279  Sum_probs=54.7

Q ss_pred             EEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHH---------CCCCCCCHHHHHHHHHHH
Q ss_conf             09998485022148897632213564014323753113233201045420021---------020101399999999999
Q 537021.9.peg.3   25 VCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCA---------PYLGASTVESQEKVAIQL   95 (208)
Q Consensus        25 ~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~T---------PHiga~T~ea~~~~a~~~   95 (208)
                      |.|+.-+.-   ..-||+.+|++|+=--+-..|++.  ++++-++..||+-+|         |=+-..|.--.++=-.+.
T Consensus         4 AvLySGGKD---S~~ALy~al~eG~eV~~LV~v~se--N~eSyMfH~pN~Hl~~l~AEavGiPL~klyt~GeeEkEVedL   78 (227)
T TIGR00289         4 AVLYSGGKD---SILALYKALEEGFEVKYLVGVISE--NEESYMFHVPNVHLTDLVAEAVGIPLIKLYTSGEEEKEVEDL   78 (227)
T ss_pred             EEEECCCHH---HHHHHHHHHHCCCCEEEEEEEECC--CCCCCEEECHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHH
T ss_conf             898518713---689999998628854785100028--898620534257899999976176625630278652117666


Q ss_pred             HHHHHHHH---CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986---038862001000134445466536999999999
Q 537021.9.peg.3   96 AHQMSDYL---IDGVVSNALNMAIISFEEAPLVKPFMTLADHLG  136 (208)
Q Consensus        96 a~~i~~~l---~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG  136 (208)
                      +.++...=   -.+.+..+|.      ..+..-| +=..+++||
T Consensus        79 ag~l~~lderGvea~~~Ga~~------S~YQK~R-id~vCrelG  115 (227)
T TIGR00289        79 AGQLEELDERGVEAVVIGAIE------SEYQKSR-IDKVCRELG  115 (227)
T ss_pred             HHHHHHHHHCCCCEEEECCEE------CCHHHHH-HHHHHHHHC
T ss_conf             215544553054547885341------0112335-778877714


No 52 
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=23.07  E-value=58  Score=14.01  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHCCCCEEEEECCCCHHCCHHH-HHHHHCCCC
Q ss_conf             755879998389980999848502214889-763221356
Q 537021.9.peg.3   11 NILNKENLSKTKSGVCIINCARGGLVDENA-LAELLQSGH   49 (208)
Q Consensus        11 ~li~~~~l~~mk~g~~lIN~aRG~ivde~a-L~~aL~~g~   49 (208)
                      -++|.+.|+.+++++-++|++-=.+-.-.+ +.++.++|+
T Consensus        37 SLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk   76 (254)
T COG2875          37 SLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGK   76 (254)
T ss_pred             CCCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             7689999964589988982476889999999999997588


No 53 
>TIGR01077 L13_A_E ribosomal protein L13; InterPro: IPR005755   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    Ribosomal protein L13 is one of the proteins from the large ribosomal subunit . In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=22.86  E-value=42  Score=14.86  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEHHH
Q ss_conf             899999998864067861677889
Q 537021.9.peg.3  166 LNSAVLAGIVRVWRVGANIISAPI  189 (208)
Q Consensus       166 l~~a~lkGlL~~~~~~VN~VNA~~  189 (208)
                      |.+-+-|-||.  ++.|+.|||+.
T Consensus        13 LAS~VAK~lL~--G~~vVvVnAE~   34 (144)
T TIGR01077        13 LASVVAKRLLN--GERVVVVNAEK   34 (144)
T ss_pred             HHHHHHHHHHC--CCEEEEEECCE
T ss_conf             89999998757--98678972260


No 54 
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; InterPro: IPR003526   This entry represents MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis.   A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The ygbB protein is a putative enzyme of this type .; GO: 0008685 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=22.83  E-value=58  Score=13.98  Aligned_cols=87  Identities=14%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             HHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCC
Q ss_conf             89763221356401432375311323320104542002102010139999999999999999986038862001000134
Q 537021.9.peg.3   39 NALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIIS  118 (208)
Q Consensus        39 ~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~  118 (208)
                      +||+-|+-.|.|+    ..|   |+.|..|-..+-..+                   .+++...++.+- ...+|+-.+=
T Consensus        49 DAlLGA~glGDIG----~~F---Pdtd~~wKgaDS~~l-------------------L~~~~~~~~~~g-y~~~N~D~ti  101 (159)
T TIGR00151        49 DALLGALGLGDIG----KHF---PDTDPRWKGADSRVL-------------------LRKAVELVKEKG-YRIGNVDVTI  101 (159)
T ss_pred             HHHHHHHHHCCCC----CCC---CCCCHHHCCCCHHHH-------------------HHHHHHHHHHCC-CCEEEEEEEE
T ss_conf             8888775200022----437---862334568877899-------------------999999998558-8045689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             4454665369999999999999972588514899981
Q 537021.9.peg.3  119 FEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYD  155 (208)
Q Consensus       119 ~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~i~~~  155 (208)
                      ..+.|.+.||+   +.|=...+.++.-++..|+|...
T Consensus       102 ia~~PKl~P~i---~~mR~~iA~~L~i~~d~vnvKAT  135 (159)
T TIGR00151       102 IAQRPKLAPHI---EAMRENIAELLGIPLDQVNVKAT  135 (159)
T ss_pred             EECCCCCCCCH---HHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             73189862226---89999998884687021132587


No 55 
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.08  E-value=38  Score=15.17  Aligned_cols=28  Identities=14%  Similarity=0.134  Sum_probs=20.3

Q ss_pred             CCCCCEEEHHHHHHHCCEEEEEEEECCC
Q ss_conf             6786167788999955908999960356
Q 537021.9.peg.3  179 RVGANIISAPIIIKENAIILSTIKRDKS  206 (208)
Q Consensus       179 ~~~VN~VNA~~iA~erGI~v~e~~~~~s  206 (208)
                      +..-|.++|-..|+++|+++--.+..+.
T Consensus       112 G~s~nii~a~~~ak~~g~~~i~ltg~~g  139 (177)
T cd05006         112 GNSPNVLKALEAAKERGMKTIALTGRDG  139 (177)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9998999999999987998999987898


No 56 
>TIGR00625 tfb2 Transcription factor tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0003702 RNA polymerase II transcription factor activity, 0006281 DNA repair, 0006355 regulation of transcription DNA-dependent, 0005634 nucleus.
Probab=21.48  E-value=61  Score=13.87  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=36.6

Q ss_pred             CCCCCHHHCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCC-------------------HHHCCCCCHHHHHHHHHH
Q ss_conf             4542002102010139999999--9999999999860388620-------------------010001344454665369
Q 537021.9.peg.3   70 GLPNVFCAPYLGASTVESQEKV--AIQLAHQMSDYLIDGVVSN-------------------ALNMAIISFEEAPLVKPF  128 (208)
Q Consensus        70 ~~~nvi~TPHiga~T~ea~~~~--a~~~a~~i~~~l~~~~~~~-------------------~vN~p~~~~~~~~~~~py  128 (208)
                      .++|.++    |--|+|+-.|+  .=.+|+||+.||++..-|-                   --|+|-++|.....|+=|
T Consensus       366 RF~NmVv----g~iTReSirrAl~nGItA~QII~yL~ThAHP~MrrlaeekleKkleldPnCk~~~pvLPPT~vDQIrLW  441 (507)
T TIGR00625       366 RFSNMVV----GQITRESIRRALANGITAEQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEQVPVLPPTVVDQIRLW  441 (507)
T ss_pred             CCCCEEE----EEECHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             2554278----865467899987416548889997424787777887787654210358876788887988234566786


No 57 
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=21.42  E-value=62  Score=13.80  Aligned_cols=70  Identities=13%  Similarity=0.225  Sum_probs=47.8

Q ss_pred             HHCCCCCCCHHHHHHHHHHH------HHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC
Q ss_conf             21020101399999999999------999999860388620010001344454665369999999999999972588-51
Q 537021.9.peg.3   76 CAPYLGASTVESQEKVAIQL------AHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISES-IQ  148 (208)
Q Consensus        76 ~TPHiga~T~ea~~~~a~~~------a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~-~~  148 (208)
                      ++|-.++....-.|--+..+      |.+|-.||+.-+-..+||.|.++.      .||-+|++|..       ... ..
T Consensus       284 ~sPFnAFLllQGLETLsLR~ERH~~NA~kVA~fL~~Hp~V~wV~YPGL~s------~~~h~lAkkYl-------~~G~~G  350 (434)
T TIGR01326       284 LSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLAS------HPHHALAKKYL-------PKGLFG  350 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC------CHHHHHHHHHH-------CCCCEE
T ss_conf             01789999998666787678888899999999972788445134888788------75378899874-------179426


Q ss_pred             EE-EEEEECCC
Q ss_conf             48-99981430
Q 537021.9.peg.3  149 EI-QIIYDGST  158 (208)
Q Consensus       149 ~I-~i~~~G~l  158 (208)
                      .| ..+..|-.
T Consensus       351 ~vLsFe~kGG~  361 (434)
T TIGR01326       351 AVLSFEIKGGR  361 (434)
T ss_pred             EEEECCCCCCH
T ss_conf             78741321828


No 58 
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.39  E-value=42  Score=14.89  Aligned_cols=30  Identities=10%  Similarity=0.111  Sum_probs=21.9

Q ss_pred             CCCCCCEEEHHHHHHHCCEEEEEEEECCCC
Q ss_conf             067861677889999559089999603568
Q 537021.9.peg.3  178 WRVGANIISAPIIIKENAIILSTIKRDKSG  207 (208)
Q Consensus       178 ~~~~VN~VNA~~iA~erGI~v~e~~~~~sG  207 (208)
                      .+..-|.++|-..|++||+.+---+-.+.|
T Consensus       119 SGnS~Nii~Ai~~A~~~g~~~i~ltG~~gg  148 (196)
T PRK10886        119 RGNSRDIVKAVEAAVTRDMTIVALTGYDGG  148 (196)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf             999989999999999889989999768862


No 59 
>pfam08745 UPF0278 UPF0278 family. Members of this family are uncharacterized proteins about 200 amino acids in length.
Probab=20.41  E-value=65  Score=13.67  Aligned_cols=59  Identities=8%  Similarity=0.014  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             134445466536999----99999999999725885148999814301114347899999998
Q 537021.9.peg.3  116 IISFEEAPLVKPFMT----LADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGI  174 (208)
Q Consensus       116 ~~~~~~~~~~~pyl~----LaekLG~l~~ql~~~~~~~I~i~~~G~la~~~t~~l~~a~lkGl  174 (208)
                      .+++..+.+++.|++    ..+.+.+|-.-+....|..-++..-+.+-.....-+...+-||+
T Consensus        46 YmPpsVy~El~~f~~~~~~~~e~~~~l~twv~~KsP~ry~i~IPa~i~ye~I~e~R~RIdkGL  108 (206)
T pfam08745        46 YIPPSVYKELTGFLDRNGCPEELLAKLDTWVVKKSPNRYELKIPAEIFYEYIEDVRERIDKGL  108 (206)
T ss_pred             EECHHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             838789999999998559988899765148896489720054539999999999999987336


No 60 
>KOG1370 consensus
Probab=20.23  E-value=66  Score=13.66  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=18.4

Q ss_pred             HHHCCCCHHHHHHCCCCEEEEECCCC
Q ss_conf             57075587999838998099984850
Q 537021.9.peg.3    8 KTKNILNKENLSKTKSGVCIINCARG   33 (208)
Q Consensus         8 ~T~~li~~~~l~~mk~g~~lIN~aRG   33 (208)
                      -.+++|..+.|.+||+++++-|.+.-
T Consensus       278 Gc~dii~~~H~~~mk~d~IvCN~Ghf  303 (434)
T KOG1370         278 GCKDIITGEHFDQMKNDAIVCNIGHF  303 (434)
T ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCC
T ss_conf             87312339999747677378525654


Done!