Query 537021.9.peg.34_1 Match_columns 208 No_of_seqs 193 out of 5626 Neff 6.0 Searched_HMMs 23785 Date Sun May 22 15:50:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_34.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ygy_A PGDH, D-3-phosphoglycer 100.0 0 0 449.9 19.6 205 1-207 202-407 (529) 2 3k5p_A D-3-phosphoglycerate de 100.0 0 0 307.4 5.0 160 1-160 214-384 (416) 3 1sc6_A PGDH, D-3-phosphoglycer 100.0 2.7E-44 0 296.2 5.1 159 1-159 203-371 (404) 4 2gcg_A Glyoxylate reductase/hy 100.0 1.9E-39 8E-44 265.9 10.3 114 1-114 216-330 (330) 5 2nac_A NAD-dependent formate d 100.0 3.6E-39 1.5E-43 264.1 10.8 114 1-114 253-367 (393) 6 3ba1_A HPPR, hydroxyphenylpyru 100.0 5.1E-39 2.1E-43 263.2 10.2 112 1-112 221-332 (333) 7 2g76_A 3-PGDH, D-3-phosphoglyc 100.0 8E-39 3.3E-43 262.0 8.5 111 1-111 225-335 (335) 8 2dbq_A Glyoxylate reductase; D 100.0 2E-38 8.2E-43 259.6 9.8 114 1-114 210-323 (334) 9 3jtm_A Formate dehydrogenase, 100.0 5.4E-38 2.3E-42 256.8 11.1 120 1-121 226-346 (351) 10 1gdh_A D-glycerate dehydrogena 100.0 4E-38 1.7E-42 257.6 10.2 112 1-112 208-319 (320) 11 2w2k_A D-mandelate dehydrogena 100.0 5.7E-38 2.4E-42 256.7 10.6 114 1-114 226-340 (348) 12 1mx3_A CTBP1, C-terminal bindi 100.0 3.9E-38 1.6E-42 257.7 9.4 114 1-114 229-344 (347) 13 1dxy_A D-2-hydroxyisocaproate 100.0 3.7E-38 1.6E-42 257.8 8.7 116 1-116 203-332 (333) 14 1j4a_A D-LDH, D-lactate dehydr 100.0 6.6E-38 2.8E-42 256.2 9.5 114 1-114 205-332 (333) 15 3gg9_A D-3-phosphoglycerate de 100.0 1.1E-37 4.8E-42 254.8 9.9 121 1-122 221-342 (352) 16 2d0i_A Dehydrogenase; structur 100.0 1.5E-37 6.3E-42 254.0 10.3 125 1-126 206-331 (333) 17 3evt_A Phosphoglycerate dehydr 100.0 2E-37 8.3E-42 253.3 9.5 116 1-116 197-314 (324) 18 3kbo_A Glyoxylate/hydroxypyruv 100.0 2.2E-37 9.3E-42 253.0 9.0 112 1-114 199-311 (315) 19 2j6i_A Formate dehydrogenase; 100.0 5.1E-37 2.1E-41 250.7 10.4 118 1-118 227-350 (364) 20 1xdw_A NAD+-dependent (R)-2-hy 100.0 9E-37 3.8E-41 249.2 9.6 112 1-112 204-330 (331) 21 2pi1_A D-lactate dehydrogenase 100.0 1.1E-36 4.8E-41 248.5 9.8 114 1-114 200-329 (334) 22 2cuk_A Glycerate dehydrogenase 100.0 3E-36 1.2E-40 245.9 10.4 111 1-112 199-310 (311) 23 1wwk_A Phosphoglycerate dehydr 100.0 5.9E-36 2.5E-40 244.0 10.2 105 1-105 202-307 (307) 24 3hg7_A D-isomer specific 2-hyd 100.0 2.1E-36 9E-41 246.8 6.8 114 1-116 200-314 (324) 25 1qp8_A Formate dehydrogenase; 100.0 2E-35 8.6E-40 240.7 9.7 113 1-113 180-296 (303) 26 2ekl_A D-3-phosphoglycerate de 100.0 2.1E-35 8.6E-40 240.7 9.4 108 1-108 202-312 (313) 27 2o4c_A Erythronate-4-phosphate 100.0 2E-35 8.5E-40 240.7 9.3 140 1-144 173-319 (380) 28 3oet_A Erythronate-4-phosphate 100.0 5.7E-33 2.4E-37 225.4 8.9 106 1-107 176-285 (381) 29 3gvx_A Glycerate dehydrogenase 100.0 8.2E-31 3.5E-35 211.9 6.1 105 1-108 179-285 (290) 30 1j3b_A ATP-dependent phosphoen 91.2 0.56 2.4E-05 25.2 6.4 97 4-104 400-511 (529) 31 1ii2_A Phosphoenolpyruvate car 88.1 0.81 3.4E-05 24.2 5.2 92 4-98 388-494 (524) 32 2olr_A Phosphoenolpyruvate car 84.5 2 8.4E-05 21.8 5.7 14 18-31 301-314 (540) 33 1ytm_A Phosphoenolpyruvate car 82.0 2.7 0.00011 21.0 7.1 98 4-104 409-516 (532) 34 2rir_A Dipicolinate synthase, 77.1 1.4 6.1E-05 22.7 2.9 10 189-198 255-264 (300) 35 2iaf_A Hypothetical protein SD 72.0 4.3 0.00018 19.7 4.3 53 140-192 26-79 (151) 36 3n58_A Adenosylhomocysteinase; 65.1 4.5 0.00019 19.6 3.2 26 9-34 312-337 (464) 37 1v8b_A Adenosylhomocysteinase; 61.1 4.7 0.0002 19.5 2.7 35 9-43 322-357 (479) 38 3d64_A Adenosylhomocysteinase; 61.0 5.8 0.00024 18.9 3.1 23 10-32 343-365 (494) 39 3gvp_A Adenosylhomocysteinase 60.8 5.9 0.00025 18.9 3.1 34 9-42 285-319 (435) 40 3ce6_A Adenosylhomocysteinase; 60.2 8.7 0.00036 17.8 4.1 51 9-59 339-390 (494) 41 3im4_C Dual specificity A kina 57.5 4.7 0.0002 19.5 2.2 22 80-101 6-27 (45) 42 3h9u_A Adenosylhomocysteinase; 48.3 5.7 0.00024 19.0 1.4 35 9-43 276-311 (436) 43 1x13_A NAD(P) transhydrogenase 43.1 15 0.00063 16.3 2.9 75 3-83 23-105 (401) 44 3bgk_A SMU.573, putative uncha 38.6 4.9 0.00021 19.3 -0.2 58 23-82 126-189 (311) 45 2ax3_A Hypothetical protein TM 32.9 12 0.00049 17.0 1.0 60 22-82 320-381 (502) 46 2vhw_A Alanine dehydrogenase; 29.7 26 0.0011 14.8 2.4 35 3-43 16-52 (377) 47 3p2y_A Alanine dehydrogenase/p 26.6 30 0.0013 14.4 2.6 25 60-84 92-118 (381) 48 2duy_A Competence protein come 25.5 20 0.00085 15.5 1.2 39 91-129 35-73 (75) 49 3bz1_U Photosystem II 12 kDa e 24.3 31 0.0013 14.4 1.9 36 96-131 46-81 (104) No 1 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Probab=100.00 E-value=0 Score=449.94 Aligned_cols=205 Identities=36% Similarity=0.541 Sum_probs=198.5 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|||++|+||||++.|++||+|++|||||||++|||+||++||++|+++||+||||++||++++||+++|||++|||+ T Consensus 202 lh~Plt~~T~~li~~~~~~~mK~ga~lIN~aRG~iVde~aL~~AL~~g~i~gAalDV~~~EP~~~~pl~~~~nvi~TPHi 281 (529) T 1ygy_A 202 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHL 281 (529) T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSC T ss_pred EECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCEEECCCC T ss_conf 90799853315107999952589986874146655759999999984997168980215789999446469999999826 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC Q ss_conf 10139999999999999999986038862001000134445466536999999999999997258851489998143011 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAV 160 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~i~~~G~la~ 160 (208) ||+|.|+|++++..+++|+.+||+|++++|+||+|+.+. .+.++||++|+||||+|++|+.++++++|+++|+|+++. T Consensus 282 ~~~T~ea~~~~~~~~~~ni~~~l~g~~~~n~VN~p~~~~--~~~~~p~~~laeklG~~~~ql~~~~~~~i~i~~~G~~~~ 359 (529) T 1ygy_A 282 GASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVV--NEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAA 359 (529) T ss_dssp SSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSCCSTTS--CTTTTTHHHHHHHHHHHHHHTSSSCCSEEEEEEEEGGGG T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC T ss_conf 448499999999999999999986999997362898655--434440435999887789877047863799999354344 Q ss_pred CCCHHHHHHHHHHHHH-HCCCCCCEEEHHHHHHHCCEEEEEEEECCCC Q ss_conf 1434789999999886-4067861677889999559089999603568 Q 537021.9.peg.3 161 MNTMVLNSAVLAGIVR-VWRVGANIISAPIIIKENAIILSTIKRDKSG 207 (208) Q Consensus 161 ~~t~~l~~a~lkGlL~-~~~~~VN~VNA~~iA~erGI~v~e~~~~~sG 207 (208) .++++++.+++||+|+ ...++||||||+.+||||||+++++++++++ T Consensus 360 ~~~~~lt~a~lkG~L~~~~~~~vN~vNA~~iA~e~Gi~v~~~~~~~~~ 407 (529) T 1ygy_A 360 EEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESP 407 (529) T ss_dssp SCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHHHSCEEEEEEESCCS T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEECCCCC T ss_conf 566456899999877652456554035578998649559996426676 No 2 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Probab=100.00 E-value=0 Score=307.39 Aligned_cols=160 Identities=35% Similarity=0.543 Sum_probs=148.0 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----CCHHHCCCCCH Q ss_conf 9577984570755879998389980999848502214889763221356401432375311323-----32010454200 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-----QNPLFGLPNVF 75 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-----~~~l~~~~nvi 75 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+++||++|||+.||++ ++||+++|||+ T Consensus 214 lh~Plt~~T~~lIn~~~l~~mK~ga~lIN~aRG~iVDe~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pl~~~~nVi 293 (416) T 3k5p_A 214 LHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVI 293 (416) T ss_dssp ECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEE T ss_pred ECCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 71453002326668999950899986885266540189999999980992589996899998985434458312699789 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCCE Q ss_conf 21020101399999999999999999860388620010001344454665369999999999999972----5--88514 Q 537021.9.peg.3 76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLI----S--ESIQE 149 (208) Q Consensus 76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~----~--~~~~~ 149 (208) +|||+||+|.|||++++.++++|+.+||++|.+.|+||+|.++.+..+...||+.+.+.++.+++|+. + -.+.. T Consensus 294 ~TPHig~~T~ea~~~~~~~~~~ni~~~l~~g~~~~~vN~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ni~~ 373 (416) T 3k5p_A 294 LTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIAS 373 (416) T ss_dssp ECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBSSSCCCCCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEE T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHH T ss_conf 99942648699999999999999999981699854142877567767888559986036443999999999766998888 Q ss_pred EEEEEECCCCC Q ss_conf 89998143011 Q 537021.9.peg.3 150 IQIIYDGSTAV 160 (208) Q Consensus 150 I~i~~~G~la~ 160 (208) +....+|+++. T Consensus 374 ~~~~~~~~~~y 384 (416) T 3k5p_A 374 QFLQTDGEVGY 384 (416) T ss_dssp EEEEECSSCEE T ss_pred HHCCCCCCEEE T ss_conf 64015674679 No 3 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Probab=100.00 E-value=2.7e-44 Score=296.24 Aligned_cols=159 Identities=30% Similarity=0.433 Sum_probs=134.9 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-----CCCHHHCCCCCH Q ss_conf 957798457075587999838998099984850221488976322135640143237531132-----332010454200 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-----LQNPLFGLPNVF 75 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-----~~~~l~~~~nvi 75 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||+.||+ .++||+++|||+ T Consensus 203 lh~Plt~~T~~lin~~~l~~mK~gailIN~aRG~iVde~aL~~aL~~g~i~gaalDVf~~EP~~~~~p~~~pl~~~~nVi 282 (404) T 1sc6_A 203 LHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVL 282 (404) T ss_dssp ECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEE T ss_pred ECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 72788856635158999974699869994377765658999999751766639997289987643344457212599889 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHCCCC--CEE Q ss_conf 210201013999999999999999998603886200100013444546653699---999999999999725885--148 Q 537021.9.peg.3 76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFM---TLADHLGCFIGQLISESI--QEI 150 (208) Q Consensus 76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl---~LaekLG~l~~ql~~~~~--~~I 150 (208) +|||+||+|.|||++++.++++|+++||+||.+.|+||+|.+++......|+++ +....+|++...+.+..+ ... T Consensus 283 ~TPHig~~T~ea~~~~~~~~~~ni~~~l~~~~~~n~vN~p~~~~~~~~~~r~~~~~~n~pgvl~~i~~~l~~~~~ni~~~ 362 (404) T 1sc6_A 283 LTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQ 362 (404) T ss_dssp EECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTBSSSCCCCCCCCSSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEE T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHH T ss_conf 88714657899999999999999999974999766887722035557874899983587766899999998769987997 Q ss_pred EEEEECCCC Q ss_conf 999814301 Q 537021.9.peg.3 151 QIIYDGSTA 159 (208) Q Consensus 151 ~i~~~G~la 159 (208) ...-+|+++ T Consensus 363 ~~~~~~~~~ 371 (404) T 1sc6_A 363 YLQTSAQMG 371 (404) T ss_dssp EEEECSSEE T ss_pred HCCCCCCEE T ss_conf 536775456 No 4 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Probab=100.00 E-value=1.9e-39 Score=265.88 Aligned_cols=114 Identities=29% Similarity=0.462 Sum_probs=111.8 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++|| +.++||+++|||++||| T Consensus 216 ~~lplt~~T~~li~~~~l~~mk~ga~lINv~RG~iVde~aL~~aL~~g~i~gAaLDVf~~EPl~~~~pL~~~~nvilTPH 295 (330) T 2gcg_A 216 VACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPH 295 (330) T ss_dssp ECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCS T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 71468865266740999985689966999478610337999999982990589996699999999984773999999885 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 01013999999999999999998603886200100 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) +||.|.|++.+++..+++|+.+|++|+++.|.||+ T Consensus 296 iag~t~~~~~~~~~~~~~ni~~~l~G~~l~n~Vnl 330 (330) T 2gcg_A 296 IGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 330 (330) T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHHHTCCCTTEECC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 12180999999999999999999878999887285 No 5 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Probab=100.00 E-value=3.6e-39 Score=264.14 Aligned_cols=114 Identities=27% Similarity=0.408 Sum_probs=111.2 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||+.|| +.++||+++||+++||| T Consensus 253 lh~PLt~~T~~lin~~~l~~MK~ga~LIN~aRG~iVDe~AL~~AL~~g~i~gAaLDV~~~EP~~~d~pL~~~~NvilTPH 332 (393) T 2nac_A 253 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPH 332 (393) T ss_dssp ECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCS T ss_pred EECCCCCCCCCEECHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCEEECCC T ss_conf 50578710157077899974599978997367650489999999982994499984799999999995781998598785 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 01013999999999999999998603886200100 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) +|++|.|+|.+++.++++|+.+||+|++++|.+|. T Consensus 333 iag~T~ea~~r~~~~~~enl~~fl~G~pl~ne~~i 367 (393) T 2nac_A 333 ISGTTLTAQARYAAGTREILECFFEGRPIRDEYLI 367 (393) T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEE T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 25054999999999999999999869899896433 No 6 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Probab=100.00 E-value=5.1e-39 Score=263.23 Aligned_cols=112 Identities=33% Similarity=0.499 Sum_probs=110.1 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|+|+|||||||+.||++++||+++|||++|||+ T Consensus 221 l~~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~ga~LDVf~~EP~~~~~L~~~~nvilTPHi 300 (333) T 3ba1_A 221 VACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHV 300 (333) T ss_dssp ECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSC T ss_pred EECCCCCCHHHHCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHCCCCEEECCCC T ss_conf 91899730333316999986255344898347644578999999982985389984799999998478569999997842 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 10139999999999999999986038862001 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v 112 (208) |+.|.|++++++..+++|+.+|++|+++.|.| T Consensus 301 a~~t~e~~~~~~~~~~~nl~~~~~G~~l~~~V 332 (333) T 3ba1_A 301 GSGTVETRKVMADLVVGNLEAHFSGKPLLTPV 332 (333) T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 51959999999999999999998699999884 No 7 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} Probab=100.00 E-value=8e-39 Score=262.00 Aligned_cols=111 Identities=41% Similarity=0.633 Sum_probs=108.7 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||+.++||+++|||++|||+ T Consensus 225 lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHi 304 (335) T 2g76_A 225 VHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHL 304 (335) T ss_dssp ECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSC T ss_pred ECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCEEECCCC T ss_conf 70688532210322999985799988997168733467999999981980489994689999999357759999999941 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 1013999999999999999998603886200 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNA 111 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~ 111 (208) |+.|.|++.+++..+++|+.+|++|+++.|. T Consensus 305 a~~T~ea~~~~~~~~~~ni~~~~~G~~l~nv 335 (335) T 2g76_A 305 GASTKEAQSRCGEEIAVQFVDMVKGKSLTGV 335 (335) T ss_dssp TTCBHHHHHHHHHHHHHHHHHHC-------- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 1083999999999999999999879999898 No 8 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Probab=100.00 E-value=2e-38 Score=259.56 Aligned_cols=114 Identities=37% Similarity=0.557 Sum_probs=112.3 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|+|++|+||||+.||++++||+++|||++|||+ T Consensus 210 ~~~plt~~T~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~al~~g~i~~a~lDV~~~EP~~~~pl~~~~nvi~TPHi 289 (334) T 2dbq_A 210 LAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHI 289 (334) T ss_dssp ECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSC T ss_pred ECCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCCEEECCCC T ss_conf 92899730125659999972189819999478865689999999983981078833667798998368559999999843 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 1013999999999999999998603886200100 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) ||.|.|++++++..+++|+.+|++|+++.|.||- T Consensus 290 ag~t~~~~~~~~~~~~~ni~~~~~g~~~~~~Vn~ 323 (334) T 2dbq_A 290 GSASFGAREGMAELVAKNLIAFKRGEIPPTLVNR 323 (334) T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHTTCCCTTBSCT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 4185999999999999999999869999985997 No 9 >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Probab=100.00 E-value=5.4e-38 Score=256.79 Aligned_cols=120 Identities=28% Similarity=0.452 Sum_probs=109.9 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|+++||+||||+.|| +.++||+++|||++||| T Consensus 226 l~~Plt~~T~~li~~~~~~~mk~~a~lIN~sRG~iVde~aL~~aL~~g~i~gA~LDV~~~EP~~~~~pl~~~~nvilTPH 305 (351) T 3jtm_A 226 INMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPH 305 (351) T ss_dssp ECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCS T ss_pred EECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCEEECCC T ss_conf 93678743325639999973799978998588753879999999972984299981699998999895884998899884 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHH Q ss_conf 010139999999999999999986038862001000134445 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEE 121 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~ 121 (208) +|+.|.|++.+++..+++|+.+|++|++++ .+|...-+.+. T Consensus 306 iag~T~e~~~~~~~~~~eni~~~l~G~~l~-~~N~v~~~~~~ 346 (351) T 3jtm_A 306 TSGTTIDAQLRYAAGTKDMLERYFKGEDFP-TENYIVKDGEL 346 (351) T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHTCCCC-GGGEEEETTEE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCEECCCCCC T ss_conf 272849999999999999999998699998-77774487666 No 10 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Probab=100.00 E-value=4e-38 Score=257.60 Aligned_cols=112 Identities=33% Similarity=0.557 Sum_probs=110.4 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|+|++|+||||++.|++||+|++|||+|||++|||+||+++|++|+++||+||||+.||++++||+++|||++|||+ T Consensus 208 ~~~plt~~T~~li~~~~l~~mk~~a~liN~~RG~vvde~aL~~aL~~g~i~~a~lDV~~~EP~~~~pl~~~~nvi~TPHi 287 (320) T 1gdh_A 208 LNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHI 287 (320) T ss_dssp ECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSC T ss_pred ECCCCCHHHHHEECHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCEEECCCH T ss_conf 86899826642118999943775379997577631571899999982993699997999999999268659999996853 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 10139999999999999999986038862001 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v 112 (208) |+.|.|++++++..+++|+.+|++|+++.|+| T Consensus 288 a~~t~~~~~~~~~~~~~ni~~~~~G~~~~n~v 319 (320) T 1gdh_A 288 GSAATQAREDMAHQANDLIDALFGGADMSYAL 319 (320) T ss_dssp TTCBHHHHHHHHHHHHHHHHHHHTTSCCTTBC T ss_pred HHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 14869999999999999999997789998778 No 11 >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Probab=100.00 E-value=5.7e-38 Score=256.67 Aligned_cols=114 Identities=24% Similarity=0.411 Sum_probs=108.3 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||++++||+++|||++|||+ T Consensus 226 l~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHi 305 (348) T 2w2k_A 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHI 305 (348) T ss_dssp ECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSC T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEECHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCCCEEECCCC T ss_conf 50678522055777768654036856897136666747989988856962589998289999998378759999999830 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHC Q ss_conf 10139999999999999999986-03886200100 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYL-IDGVVSNALNM 114 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l-~~~~~~~~vN~ 114 (208) |+.|.|++.+++..+++|+.+|| +|+++.|+||. T Consensus 306 a~~t~e~~~~~~~~~~~nl~~~l~~G~pl~~~v~~ 340 (348) T 2w2k_A 306 GGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGK 340 (348) T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHTCCCCSSBCSC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 01829999999999999999999779825889888 No 12 >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Probab=100.00 E-value=3.9e-38 Score=257.67 Aligned_cols=114 Identities=30% Similarity=0.500 Sum_probs=108.9 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC--CCCHHHCCCCCHHHC Q ss_conf 957798457075587999838998099984850221488976322135640143237531132--332010454200210 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA--LQNPLFGLPNVFCAP 78 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~--~~~~l~~~~nvi~TP 78 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|+|+|||||||+.||. .++||+++|||++|| T Consensus 229 lh~Plt~~T~~li~~~~l~~mk~gailIN~aRG~iVde~aL~~aL~~g~i~gAaLDV~~~EP~~~~~~pL~~~~nviiTP 308 (347) T 1mx3_A 229 LHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308 (347) T ss_dssp ECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECS T ss_pred EECCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCEECHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCEEECC T ss_conf 70554212246457999973789978998357544758999999876983289996689889987750676499999989 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 201013999999999999999998603886200100 Q 537021.9.peg.3 79 YLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 79 Higa~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) |+|+.|.|++.+++..+++|+.+||+|+++.+.+|. T Consensus 309 Hia~~T~ea~~~~~~~~~~nl~~~l~G~~p~~lvN~ 344 (347) T 1mx3_A 309 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNC 344 (347) T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSB T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 501080999999999999999999869999987558 No 13 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Probab=100.00 E-value=3.7e-38 Score=257.80 Aligned_cols=116 Identities=30% Similarity=0.491 Sum_probs=111.9 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC--------------CCC Q ss_conf 957798457075587999838998099984850221488976322135640143237531132--------------332 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA--------------LQN 66 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~--------------~~~ 66 (208) +|+|+|++|++|||++.|++||+|++|||+|||++|||+||+++|++|+++|||||||+.||. ..+ T Consensus 203 ~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lvde~aL~~aL~~g~i~gaaLDV~~~EP~~~~~~~~~~~~~~p~~~ 282 (333) T 1dxy_A 203 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWD 282 (333) T ss_dssp ECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHH T ss_pred EECCCCCCCCHHHCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCHH T ss_conf 40687677511327999963557847985157746867999999980991479996089999631102212444682126 Q ss_pred HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC Q ss_conf 01045420021020101399999999999999999860388620010001 Q 537021.9.peg.3 67 PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAI 116 (208) Q Consensus 67 ~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~ 116 (208) ||+++|||++|||+||.|.|++.++...+++|+.+||++|.+.|.||+|. T Consensus 283 ~l~~~~nviiTPHiag~T~ea~~~~~~~~~~nl~~~l~~g~~~n~Vn~p~ 332 (333) T 1dxy_A 283 ELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVTGPA 332 (333) T ss_dssp HHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEECC-- T ss_pred HHHCCCCEEECCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 77369999999932019499999999999999999981799877155999 No 14 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Probab=100.00 E-value=6.6e-38 Score=256.23 Aligned_cols=114 Identities=28% Similarity=0.421 Sum_probs=110.1 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCC-------------C-CCCC Q ss_conf 9577984570755879998389980999848502214889763221356401432375311-------------3-2332 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE-------------P-ALQN 66 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~E-------------P-~~~~ 66 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|+++|||||||+.| | +.++ T Consensus 205 ~~lPlt~~T~~li~~~~~~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~P~~~~~ 284 (333) T 1j4a_A 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 284 (333) T ss_dssp ECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHH T ss_pred EECCCCCCHHCEECHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 91689851120105999952589988998545402577999999985992589996089987754221123458873334 Q ss_pred HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 010454200210201013999999999999999998603886200100 Q 537021.9.peg.3 67 PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 67 ~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) ||+++|||++|||+|+.|.|++.+++..+++|+.+|++|+++.|+||+ T Consensus 285 ~L~~~~nviiTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~n~Vn~ 332 (333) T 1j4a_A 285 DLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVKV 332 (333) T ss_dssp HHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCCC T ss_pred HHHCCCCEEECCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 465299899999410182999999999999999999769999988719 No 15 >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} Probab=100.00 E-value=1.1e-37 Score=254.79 Aligned_cols=121 Identities=27% Similarity=0.410 Sum_probs=113.3 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|+++||+||||++|| ++++||+++|||++||| T Consensus 221 ~~~Plt~~T~~li~~~~~~~mk~ga~lIN~sRG~ivde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nviiTPH 300 (352) T 3gg9_A 221 VHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300 (352) T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCS T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEECHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 34678766635767999863188517997147736848999999984992169995899999999974773999999885 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHH Q ss_conf 0101399999999999999999860388620010001344454 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEA 122 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~ 122 (208) +||.|.|++.+++..+++|+.+||+|+ +.|.||-+...++.. T Consensus 301 iag~t~ea~~~~~~~~~~ni~~~l~G~-~~~~vN~~~~~~~~~ 342 (352) T 3gg9_A 301 IGYVERESYEMYFGIAFQNILDILQGN-VDSVANPTALAPALI 342 (352) T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHHTTC-CTTBSCGGGSSCTTT T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHH T ss_conf 324779999999999999999998699-973558453573355 No 16 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=1.5e-37 Score=254.03 Aligned_cols=125 Identities=28% Similarity=0.392 Sum_probs=117.5 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|||++|+||||++.|++||++ +|||+|||++|||+||++||++|+|+|||||||++|| +.++||+.+|||++||| T Consensus 206 l~~Plt~~T~~li~~~~l~~mk~~-~lIN~aRG~vVde~aL~~aL~~g~i~gaaLDVf~~EP~~~~~~l~~~~nviiTPH 284 (333) T 2d0i_A 206 LALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPH 284 (333) T ss_dssp ECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCS T ss_pred ECCCCCCCCCCCHHHHHHHHCCCC-CEEECCCCHHCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHCCCCCEEECCC T ss_conf 878876666441245477645657-6698677432169999999974976489994899988997666707999998994 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHH Q ss_conf 01013999999999999999998603886200100013444546653 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVK 126 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~ 126 (208) +||.|.|++++++..+++|+.+|++|+.+.|.||-..++....+.+| T Consensus 285 ia~~t~e~~~~~~~~~~~nl~~~~~g~~~~n~Vn~~~~~~~~~~~~~ 331 (333) T 2d0i_A 285 YAGLALEAQEDVGFRAVENLLKVLRGEVPEDLVNKEVLEVRPIENVK 331 (333) T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTBSCTTHHHHSCGGGGC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCC T ss_conf 03083999999999999999999879999886998884865765554 No 17 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Probab=100.00 E-value=2e-37 Score=253.27 Aligned_cols=116 Identities=26% Similarity=0.395 Sum_probs=110.5 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|||++|++|||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||++|| +.++||+++|||++||| T Consensus 197 ~~lPlt~~T~~li~~~~~~~mk~~a~lIN~~RG~vvde~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pl~~~~nviiTPH 276 (324) T 3evt_A 197 NALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPH 276 (324) T ss_dssp ECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCS T ss_pred ECCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCEECHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 32579700358637999753213541454136542389999999862996389997689999998874772999999993 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHCCC Q ss_conf 0101399999999999999999860-388620010001 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLI-DGVVSNALNMAI 116 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~-~~~~~~~vN~p~ 116 (208) +|+.|.|++.+++..+++|+.+||+ |.++.|.||... T Consensus 277 iag~t~~~~~~~~~~~~~Nl~~~l~~g~~~~n~Vn~~~ 314 (324) T 3evt_A 277 ISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVDLNR 314 (324) T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC--- T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHH T ss_conf 25182999999999999999999968997887099220 No 18 >3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} Probab=100.00 E-value=2.2e-37 Score=252.95 Aligned_cols=112 Identities=29% Similarity=0.396 Sum_probs=107.5 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++|| |.++||+++|||++||| T Consensus 199 ~~~Plt~~T~~li~~~~l~~mk~~a~lINvaRG~vvde~aL~~aL~~g~i~gA~LDV~~~EPlp~~~pL~~~~nv~lTPH 278 (315) T 3kbo_A 199 NLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPH 278 (315) T ss_dssp ECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHSSEEEEEESCCSSSSCCTTCGGGGCTTEEECSS T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEECHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 04788533336232999986145425885167745779999999984996389986898888998765774999999994 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 01013999999999999999998603886200100 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) +|+.|.|+ ++...+++|+.+|++|+++.|.||. T Consensus 279 ia~~t~~~--~~~~~~~~nl~~~~~G~~l~n~Vd~ 311 (315) T 3kbo_A 279 IAAVTRPA--EAIDYISRTITQLEKGEPVTGQVDR 311 (315) T ss_dssp CSCCCCHH--HHHHHHHHHHHHHHTTCCCSCBCCT T ss_pred CCCCCHHH--HHHHHHHHHHHHHHCCCCCCCEECH T ss_conf 47588999--9999999999999879988775880 No 19 >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Probab=100.00 E-value=5.1e-37 Score=250.72 Aligned_cols=118 Identities=25% Similarity=0.405 Sum_probs=109.2 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCC----- Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-233201045420----- Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNV----- 74 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nv----- 74 (208) +|+|+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+++|||||||++|| +.++||++++|+ T Consensus 227 l~~Plt~~T~~li~~~~f~~mK~ga~lIN~aRG~iVde~aL~~aL~~g~i~gaaLDV~~~EP~~~~~pl~~~~n~~~~~~ 306 (364) T 2j6i_A 227 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN 306 (364) T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCE T ss_pred ECCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCEECHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCC T ss_conf 63677434403000999972799987996068755779999999983995379996699999998882340710037885 Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCC Q ss_conf 02102010139999999999999999986038862001000134 Q 537021.9.peg.3 75 FCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIIS 118 (208) Q Consensus 75 i~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~ 118 (208) ++|||+|+.|.|++.+++..+++|+.+||+|+++..++|.-..+ T Consensus 307 iiTPHia~~T~ea~~~~~~~~~~ni~~fl~G~~~~~P~nvV~~~ 350 (364) T 2j6i_A 307 AMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLN 350 (364) T ss_dssp EECCSCGGGSHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEBT T ss_pred EECCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC T ss_conf 65175301869999999999999999998499989999889799 No 20 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Probab=100.00 E-value=9e-37 Score=249.16 Aligned_cols=112 Identities=33% Similarity=0.581 Sum_probs=106.8 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC----------CCCHHHC Q ss_conf 957798457075587999838998099984850221488976322135640143237531132----------3320104 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA----------LQNPLFG 70 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~----------~~~~l~~ 70 (208) +|+|+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||. .++||+. T Consensus 204 ~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~pl~~ 283 (331) T 1xdw_A 204 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFE 283 (331) T ss_dssp ECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 34688745667468999960899988999166432689999999974996179996689988753211123555686677 Q ss_pred -----CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf -----542002102010139999999999999999986038862001 Q 537021.9.peg.3 71 -----LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 (208) Q Consensus 71 -----~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v 112 (208) +|||++|||+|+.|.|++++++..+++|+.+|+++|.++|.| T Consensus 284 ~~~~~~~nviiTPHia~~t~e~~~~~~~~~~~nl~~~~~~g~~~n~V 330 (331) T 1xdw_A 284 KLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330 (331) T ss_dssp HHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBC T ss_pred HHHCCCCCEEECCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 76315998998884101839999999999999999998089999887 No 21 >2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A* Probab=100.00 E-value=1.1e-36 Score=248.54 Aligned_cols=114 Identities=32% Similarity=0.455 Sum_probs=107.6 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCC------------- Q ss_conf 957798457075587999838998099984850221488976322135640143237531132-332------------- Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQN------------- 66 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~------------- 66 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||. .++ T Consensus 200 ~~lPlt~~T~~li~~~~~~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gaalDV~~~EPl~~~~~~~~~~~~~~~~~ 279 (334) T 2pi1_A 200 LHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLK 279 (334) T ss_dssp ECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHH T ss_pred ECCCCCHHHCCCCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 84789825406769999973699978985577750289999999982997069996589888754443323455565322 Q ss_pred --HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf --010454200210201013999999999999999998603886200100 Q 537021.9.peg.3 67 --PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 67 --~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) +|+.+|||++|||+|++|.|++.+++..+++|+.+|++|+++...+|. T Consensus 280 ~~~L~~~~nvi~TPHia~~t~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~ 329 (334) T 2pi1_A 280 ILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNF 329 (334) T ss_dssp HHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGE T ss_pred CHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 21241599799899510186999999999999999999869997678980 No 22 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} Probab=100.00 E-value=3e-36 Score=245.91 Aligned_cols=111 Identities=37% Similarity=0.580 Sum_probs=107.2 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++ .+|+++|||||||+.|| +.++||+++|||++||| T Consensus 199 ~~~plt~~t~~li~~~~l~~mk~~a~liN~~RG~~vde~~l~~a-~~~~i~~aalDV~~~EP~~~~~pl~~~~nv~~TPH 277 (311) T 2cuk_A 199 LHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPH 277 (311) T ss_dssp ECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHH-HTTTSSEEEESSCSSSSCCTTSGGGGCTTEEECCS T ss_pred ECCCCCHHHCCCCCHHHHHHCCCCEEEEECCCCCEECHHHHHHH-HHCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 93889847627748999974199849997787651089999999-70994379998389999999995781999999982 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 010139999999999999999986038862001 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v 112 (208) +|+.|.|++.+++..+++|+.+|++|++++|+| T Consensus 278 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~~n~V 310 (311) T 2cuk_A 278 IGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310 (311) T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 675949999999999999999998799999868 No 23 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=5.9e-36 Score=244.05 Aligned_cols=105 Identities=42% Similarity=0.663 Sum_probs=102.7 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|+++||+||||++|| |.++||+++|||++||| T Consensus 202 l~lplt~~T~~li~~~~l~~mk~~~~liN~~RG~~vd~~aL~~aL~~g~i~~aalDV~~~EP~~~~~~l~~~~nv~~TPH 281 (307) T 1wwk_A 202 IHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPH 281 (307) T ss_dssp ECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSS T ss_pred ECCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 97899831126569999973799809997786644699999999981996369995699999998885774999999994 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 01013999999999999999998603 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLID 105 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~ 105 (208) +|+.|.|++++++..+++|+.+||+| T Consensus 282 ~a~~t~~~~~~~~~~~~~ni~~~l~G 307 (307) T 1wwk_A 282 IGASTVEAQERAGVEVAEKVVKILKG 307 (307) T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 23273999999999999999998583 No 24 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} Probab=100.00 E-value=2.1e-36 Score=246.81 Aligned_cols=114 Identities=25% Similarity=0.457 Sum_probs=109.0 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|+|++|++|||++.|++||+|++|||+|||++|||+||++||++|+++||+||||+.|| |.++||+++|||++||| T Consensus 200 l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~l~ga~lDV~~~EP~~~~~pl~~~~nvi~TPH 279 (324) T 3hg7_A 200 SVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPH 279 (324) T ss_dssp ECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCS T ss_pred EECCCCCCCHHHHCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 20589842021205899975579848998416440576999999974995279980699999999974775999999982 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC Q ss_conf 0101399999999999999999860388620010001 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAI 116 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~ 116 (208) +|++|.| .+++..+++|+.+|++|+++.|.||... T Consensus 280 ia~~t~e--~~~~~~~~~ni~~~~~g~~~~n~Vn~~~ 314 (324) T 3hg7_A 280 NSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKIDFDK 314 (324) T ss_dssp CSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCCCC- T ss_pred CCHHHHH--HHHHHHHHHHHHHHHCCCCCCCEECCHH T ss_conf 4076699--9999999999999986999988499123 No 25 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Probab=100.00 E-value=2e-35 Score=240.67 Aligned_cols=113 Identities=18% Similarity=0.333 Sum_probs=107.5 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCC-CC-CCCCHHHCCCCCHHHC Q ss_conf 957798457075587999838998099984850221488976322135640143237531-13-2332010454200210 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV-EP-ALQNPLFGLPNVFCAP 78 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~-EP-~~~~~l~~~~nvi~TP 78 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||+++|++|++++||+|||+. || +.++||+++|||++|| T Consensus 180 ~~~Plt~~T~~li~~~~l~~mk~ga~lIN~~RG~ivde~aL~~aL~~g~i~~aalDV~~~eep~~~~~~L~~~pnviiTP 259 (303) T 1qp8_A 180 CALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP 259 (303) T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECC T ss_pred ECCCCCHHCCCCCCHHHHHHHCCCEEEEEECCCHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCEEECC T ss_conf 61679700057458889751015507999435000361999999980997179960688899999987577599999998 Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 2010--1399999999999999999860388620010 Q 537021.9.peg.3 79 YLGA--STVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 (208) Q Consensus 79 Higa--~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN 113 (208) |+|| .|.+++.+++..+++|+.+|++|+.++|.|| T Consensus 260 Hiag~~~t~~~~~~~~~~~~~nl~~~~~g~~~~n~v~ 296 (303) T 1qp8_A 260 WVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAK 296 (303) T ss_dssp SCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEC T ss_conf 7777655799999999999999999983899987089 No 26 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Probab=100.00 E-value=2.1e-35 Score=240.65 Aligned_cols=108 Identities=27% Similarity=0.359 Sum_probs=103.1 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCC---CHHHCCCCCHHH Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233---201045420021 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQ---NPLFGLPNVFCA 77 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~---~~l~~~~nvi~T 77 (208) +|+|+|++|+||||++.|++||+|++|||+|||++|||+||+++|++|+++||+||||+.||+++ +||+++|||++| T Consensus 202 ~~~plt~~T~~li~~~~l~~mk~~a~lIN~~RG~ivde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~l~~~~NviiT 281 (313) T 2ekl_A 202 LHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVT 281 (313) T ss_dssp ECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEEC T ss_pred ECCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCEECHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEC T ss_conf 52633322346537578632157871440677636757999999980993399982899989976531467569989999 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 0201013999999999999999998603886 Q 537021.9.peg.3 78 PYLGASTVESQEKVAIQLAHQMSDYLIDGVV 108 (208) Q Consensus 78 PHiga~T~ea~~~~a~~~a~~i~~~l~~~~~ 108 (208) ||+|+.|.|++.+++..+++|+.+||++.++ T Consensus 282 PHia~~T~~s~~~~~~~~~~ni~~~l~~~~~ 312 (313) T 2ekl_A 282 THIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312 (313) T ss_dssp CSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred CCHHHCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9654488999999999999999999965699 No 27 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Probab=100.00 E-value=2e-35 Score=240.71 Aligned_cols=140 Identities=23% Similarity=0.349 Sum_probs=123.1 Q ss_pred CCCCCCH----HHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHH Q ss_conf 9577984----570755879998389980999848502214889763221356401432375311323320104542002 Q 537021.9.peg.3 1 LHVPLTN----KTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFC 76 (208) Q Consensus 1 lH~Plt~----~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~ 76 (208) +|+|||+ +|+||||++.|++||+|++|||+|||++|||+||+++|++|++++|+||||+.||+ ++|++.++|+++ T Consensus 173 lh~plt~~~~~~T~~lin~~~l~~mk~ga~lIN~sRG~vVde~aL~~aL~~g~i~~a~LDV~~~EP~-~~~ll~~~nvi~ 251 (380) T 2o4c_A 173 LHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIA 251 (380) T ss_dssp ECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTS-CCHHHHTTCSEE T ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC-CCHHHCCCCCEE T ss_conf 9566887654015767509999737999689980577666999999999829952899827999999-895676985544 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHC Q ss_conf 1020101399999999999999999860388620010001344454---6653699999999999999725 Q 537021.9.peg.3 77 APYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEA---PLVKPFMTLADHLGCFIGQLIS 144 (208) Q Consensus 77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~---~~~~pyl~LaekLG~l~~ql~~ 144 (208) |||+||+|.|++.+++.++++++.+||..... +|++...++.+ ..+.|+++.++.++.++.|+.+ T Consensus 252 TPHiAg~T~e~~~r~~~~~~~~l~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~yd 319 (380) T 2o4c_A 252 TPHIAGYSLEGKLRGTAQIYQAYCAWRGIAER---VSLQDVLPETWLAGLQLNPGCDPAWALATLCRAVYD 319 (380) T ss_dssp CSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCC---CCGGGTCCCCSEEEEEECTTCCHHHHHHHHHHHHCC T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 78156487999999999999999998587656---786767986432212457664657899999998688 No 28 >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Probab=99.98 E-value=5.7e-33 Score=225.37 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=99.0 Q ss_pred CCCCCCHH----HHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHH Q ss_conf 95779845----70755879998389980999848502214889763221356401432375311323320104542002 Q 537021.9.peg.3 1 LHVPLTNK----TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFC 76 (208) Q Consensus 1 lH~Plt~~----T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~ 76 (208) +|+|||++ |+||||++.|++||+|++|||+|||++|||+||+++|++|+++||+||||++||+++..++. +++++ T Consensus 176 lh~plt~~~~~~T~~li~~~~l~~mk~~a~lIN~sRG~vVde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~ll~-~~~i~ 254 (381) T 3oet_A 176 FHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLE-AVDIG 254 (381) T ss_dssp ECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHH-HSSEE T ss_pred EECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCC-CCCEE T ss_conf 53267765544341347788886308995799806734108999999998499448998189999898845666-88898 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 1020101399999999999999999860388 Q 537021.9.peg.3 77 APYLGASTVESQEKVAIQLAHQMSDYLIDGV 107 (208) Q Consensus 77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~ 107 (208) ||||||+|.|++.+++.++++++.+||.+.+ T Consensus 255 TPHiAg~T~e~~~r~~~~~~e~l~~fl~~~~ 285 (381) T 3oet_A 255 TSHIAGYTLEGKARGTTQVFEAYSAFIGREQ 285 (381) T ss_dssp CSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 6854528299999999999999999978798 No 29 >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Probab=99.96 E-value=8.2e-31 Score=211.86 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=94.1 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-CCHHHCCCCCHHHCC Q ss_conf 9577984570755879998389980999848502214889763221356401432375311323-320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-QNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-~~~l~~~~nvi~TPH 79 (208) +|+|+|++|++|||++.|++||+|++|||+|||++|||+||+++|++|++.+|++|||++||.+ ++ .+|||++||| T Consensus 179 ~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~~vde~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~l~nvilTPH 255 (290) T 3gvx_A 179 IAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITET---NLRNAILSPH 255 (290) T ss_dssp ECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSC---CCSSEEECCS T ss_pred EECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---CCCCEEECCC T ss_conf 6257633565520158998779834785405532676899999998399449996589999998767---9998899997 Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 01013-999999999999999998603886 Q 537021.9.peg.3 80 LGAST-VESQEKVAIQLAHQMSDYLIDGVV 108 (208) Q Consensus 80 iga~T-~ea~~~~a~~~a~~i~~~l~~~~~ 108 (208) +|++| .++.+++...+++|+.+||+|+-- T Consensus 256 iAg~~~~~~~~~~~~~~~~nl~~~~~Ge~~ 285 (290) T 3gvx_A 256 VAGGMSGEIMDIAIQLAFENVRNFFEGEGH 285 (290) T ss_dssp CSSCBTTBCCHHHHHHHHHHHHHHTC---- T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 241679999999999999999999859998 No 30 >1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A* Probab=91.21 E-value=0.56 Score=25.25 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=47.5 Q ss_pred CCCHHHHCCCCHHHHHHCCCCEEEEECC----------CCHHCCHHHHHHHHCCCCCCEEEECC-CCCCCCCC----CHH Q ss_conf 7984570755879998389980999848----------50221488976322135640143237-53113233----201 Q 537021.9.peg.3 4 PLTNKTKNILNKENLSKTKSGVCIINCA----------RGGLVDENALAELLQSGHVAEAGFDV-FEVEPALQ----NPL 68 (208) Q Consensus 4 Plt~~T~~li~~~~l~~mk~g~~lIN~a----------RG~ivde~aL~~aL~~g~i~~aalDV-~~~EP~~~----~~l 68 (208) |+-+..+.-+=.+.+++-+-.++||||+ |-.+=..-++++++-+|.+. ++ |...|... ..+ T Consensus 400 ~~~~~~ya~~l~eki~~~~~~~yLvNTGw~gg~~g~G~ri~l~~Tr~ii~ai~~G~l~----~~~~~~~~~fgl~iP~~~ 475 (529) T 1j3b_A 400 PMHPGVYARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALE----NVPYRRDPVFGFEVPLEA 475 (529) T ss_dssp SSCHHHHHHHHHHHHHHHCCEEEEEECSEESSSTTTSEECCHHHHHHHHHHHHHTGGG----GSCEEECTTTCCEEESCB T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC----CCCEEECCCCCEECCCCC T ss_conf 7777899999999998669878998357767888888745788999999999619755----777067687785367648 Q ss_pred HCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 045420021020101399999999999999999860 Q 537021.9.peg.3 69 FGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLI 104 (208) Q Consensus 69 ~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~ 104 (208) -+.|.-++.|...++..++....+...++.-++.|+ T Consensus 476 ~gv~~~~l~P~~~w~d~~~y~~~~~~L~~~f~~nf~ 511 (529) T 1j3b_A 476 PGVPQELLNPRETWADKEAYDQQARKLARLFQENFQ 511 (529) T ss_dssp TTBCGGGGCGGGGSSCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 998846679856058989999999999999999998 No 31 >1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1 Probab=88.06 E-value=0.81 Score=24.24 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=34.8 Q ss_pred CCCHHHHCCCCHHHHHHCCCCEEEEECC-----------CCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCC----CHH Q ss_conf 7984570755879998389980999848-----------5022148897632213564014323753113233----201 Q 537021.9.peg.3 4 PLTNKTKNILNKENLSKTKSGVCIINCA-----------RGGLVDENALAELLQSGHVAEAGFDVFEVEPALQ----NPL 68 (208) Q Consensus 4 Plt~~T~~li~~~~l~~mk~g~~lIN~a-----------RG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~----~~l 68 (208) |+.+..+.-+=.+.++..+-.++||||+ |=.+-...++++|+-+|.+..+- |+..|... ..+ T Consensus 388 ~~~p~~ya~~l~e~i~~~~~~~yLvNTGw~gg~~g~g~~Ri~l~~Tr~ii~ai~~G~l~~~~---~~~~~~fgl~iP~~~ 464 (524) T 1ii2_A 388 VRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIIDAIHDGTLDRTE---YEEYPGWGLHIPKYV 464 (524) T ss_dssp CSCHHHHHHHHHHHHHHHTCEEEEEECSEESSCGGGTCEECCHHHHHHHHHHHHSSSGGGSC---EEEETTTTEEEESCC T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---EEECCCCCEECCCCC T ss_conf 66777899999999997399689992575467678888662889999999999709865775---167587784166868 Q ss_pred HCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 045420021020101399999999999999 Q 537021.9.peg.3 69 FGLPNVFCAPYLGASTVESQEKVAIQLAHQ 98 (208) Q Consensus 69 ~~~~nvi~TPHiga~T~ea~~~~a~~~a~~ 98 (208) -+.|.-++-|...+.-.++.+..+...++. T Consensus 465 ~gv~~~~l~P~~~w~d~~~y~~~a~~L~~~ 494 (524) T 1ii2_A 465 AKVPEHLLNPRKAWKDVRQFNETSKELVAM 494 (524) T ss_dssp TTSCHHHHSHHHHCSCHHHHHHHHHHHHHH T ss_pred CCCCHHHCCHHHHCCCHHHHHHHHHHHHHH T ss_conf 998826659867558999999999999999 No 32 >2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A* Probab=84.46 E-value=2 Score=21.78 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=6.7 Q ss_pred HHHCCCCEEEEECC Q ss_conf 98389980999848 Q 537021.9.peg.3 18 LSKTKSGVCIINCA 31 (208) Q Consensus 18 l~~mk~g~~lIN~a 31 (208) +..++.|+++-|+. T Consensus 301 ~~a~~~~avlENV~ 314 (540) T 2olr_A 301 YNAIRRDALLENVT 314 (540) T ss_dssp HHTCSTTCEEESCE T ss_pred HHHHHCCCEEECCE T ss_conf 77652153332105 No 33 >1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A Probab=81.99 E-value=2.7 Score=21.02 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=54.6 Q ss_pred CCCHHHHCCCCHHHHHHCCCCEEEEECCC---C---HHCCHHHHHHHHCCCCCCEEEECCCCCCCCCC----CHHHCCCC Q ss_conf 79845707558799983899809998485---0---22148897632213564014323753113233----20104542 Q 537021.9.peg.3 4 PLTNKTKNILNKENLSKTKSGVCIINCAR---G---GLVDENALAELLQSGHVAEAGFDVFEVEPALQ----NPLFGLPN 73 (208) Q Consensus 4 Plt~~T~~li~~~~l~~mk~g~~lIN~aR---G---~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~----~~l~~~~n 73 (208) |+-+..+.-+=.+.+++-+-.++||||+= | .+-...++++++-+|.|..+- |+..|... ..+-+.|. T Consensus 409 ~~~p~~ya~~l~~~i~~~~~~~yLvNTGw~G~G~ri~l~~Tr~ii~ai~~G~l~~~~---~~~d~~fg~~iP~~~~gv~~ 485 (532) T 1ytm_A 409 TLPPTKYAEVLVKRMEASGAKAYLVNTGWNGTGKRISIKDTRGIIDAILDGSIDTAN---TATIPYFNFTVPTELKGVDT 485 (532) T ss_dssp CSCHHHHHHHHHHHHHHHTCEEEEEECSBCTTSSBCCHHHHHHHHHHHHTSGGGGSC---EEEETTTTEEEESCCTTSCT T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---EEECCCCCEECCCCCCCCCH T ss_conf 568289999999999873982899927878788662899999999999659644673---15658778334565899883 Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 0021020101399999999999999999860 Q 537021.9.peg.3 74 VFCAPYLGASTVESQEKVAIQLAHQMSDYLI 104 (208) Q Consensus 74 vi~TPHiga~T~ea~~~~a~~~a~~i~~~l~ 104 (208) -++.|.-.+...++.++.+...++.-++.|+ T Consensus 486 ~~l~P~~~w~d~~~Y~~~a~~L~~~F~~nf~ 516 (532) T 1ytm_A 486 KILDPRNTYADASEWEVKAKDLAERFQKNFK 516 (532) T ss_dssp GGGSGGGGSSSHHHHHHHHHHHHHHHHHHHT T ss_pred HHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 5479756338989999999999999999998 No 34 >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} Probab=77.09 E-value=1.4 Score=22.68 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=4.7 Q ss_pred HHHHHCCEEE Q ss_conf 9999559089 Q 537021.9.peg.3 189 IIIKENAIIL 198 (208) Q Consensus 189 ~iA~erGI~v 198 (208) ..|+++||.. T Consensus 255 ~~a~~~gi~~ 264 (300) T 2rir_A 255 KYAEKQGIKA 264 (300) T ss_dssp HHHHHHTCEE T ss_pred HHHHHHCCEE T ss_conf 9999839899 No 35 >2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, protein structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A Probab=72.00 E-value=4.3 Score=19.71 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=36.5 Q ss_pred HHHHCCCCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCCCEEEHHHHHH Q ss_conf 9972588514899981430111434789-9999998864067861677889999 Q 537021.9.peg.3 140 GQLISESIQEIQIIYDGSTAVMNTMVLN-SAVLAGIVRVWRVGANIISAPIIIK 192 (208) Q Consensus 140 ~ql~~~~~~~I~i~~~G~la~~~t~~l~-~a~lkGlL~~~~~~VN~VNA~~iA~ 192 (208) .+..-..+.+|+|+.+|.++......-| .|++.||+....+.+..-.+..+++ T Consensus 26 ~~~~~~~~~~i~v~LyGSLa~TGkGHgTD~Av~~GL~G~~p~~~~~~~~~~~~~ 79 (151) T 2iaf_A 26 QKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASMIPRMH 79 (151) T ss_dssp HTTCTTTCCEEEEEEEHHHHHTCTTSSHHHHHHHHTTTCCCC-----CHHHHHH T ss_pred HCCCCCCCEEEEEEEECHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 531568842999998461441399655049999650588977689667699999 No 36 >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Probab=65.13 E-value=4.5 Score=19.62 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=19.6 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCH Q ss_conf 70755879998389980999848502 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGG 34 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~ 34 (208) .++.|+.+.|.+||+|+++-|++--. T Consensus 312 ~~~vi~~~h~~~MKdgailaN~GHfd 337 (464) T 3n58_A 312 NKDVITIDHMRKMKDMCIVGNIGHFD 337 (464) T ss_dssp SSSSBCHHHHHHSCTTEEEEECSSST T ss_pred CCCCCCHHHHHHHCCCCEEECCCCCC T ss_conf 88746889999655897896556766 No 37 >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum 3D7} SCOP: c.2.1.4 c.23.12.3 Probab=61.13 E-value=4.7 Score=19.46 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=26.1 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHH Q ss_conf 707558799983899809998485022-14889763 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALAE 43 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~ 43 (208) .++.|+.+.|.+||+|+++-|+.--.. ||-..|.+ T Consensus 322 ~~~vI~~eh~~~MKdgAIl~N~GHfd~EId~~~l~~ 357 (479) T 1v8b_A 322 NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479) T ss_dssp SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT T ss_pred CCCCCCHHHHHHHCCCEEEECCCCCCCEECHHHHHH T ss_conf 986236999984138819973577641011898974 No 38 >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* Probab=60.99 E-value=5.8 Score=18.91 Aligned_cols=23 Identities=9% Similarity=0.333 Sum_probs=13.0 Q ss_pred HCCCCHHHHHHCCCCEEEEECCC Q ss_conf 07558799983899809998485 Q 537021.9.peg.3 10 KNILNKENLSKTKSGVCIINCAR 32 (208) Q Consensus 10 ~~li~~~~l~~mk~g~~lIN~aR 32 (208) ++.|+.+.|..||+|+++-|++- T Consensus 343 ~~vi~~eh~~~MKdGaIlaN~GH 365 (494) T 3d64_A 343 YHVINHDHMKAMRHNAIVCNIGH 365 (494) T ss_dssp SCSBCHHHHHHCCTTEEEEECSS T ss_pred CCCCCHHHHHHHCCCCEEECCCC T ss_conf 66355999998538979966667 No 39 >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Probab=60.85 E-value=5.9 Score=18.86 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=25.6 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCH-HCCHHHHH Q ss_conf 70755879998389980999848502-21488976 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGG-LVDENALA 42 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~-ivde~aL~ 42 (208) .++.|+.+.|..||+|+++-|.+--. =||-.+|. T Consensus 285 n~~vI~~eh~~~mKdgaIlaNaGHfd~EId~~~L~ 319 (435) T 3gvp_A 285 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR 319 (435) T ss_dssp CSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC T ss_pred CCCCCCHHHHHHHCCCEEEECCCCCCCCEEHHHHH T ss_conf 87727799999861790998047677211399985 No 40 >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding domain, 37 amino acid insertional region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Probab=60.23 E-value=8.7 Score=17.81 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=31.0 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCC-CHHCCHHHHHHHHCCCCCCEEEECCCC Q ss_conf 707558799983899809998485-022148897632213564014323753 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCAR-GGLVDENALAELLQSGHVAEAGFDVFE 59 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aR-G~ivde~aL~~aL~~g~i~~aalDV~~ 59 (208) .++.|+.+.|.+||+|+++-|++- --=||-.+|.+.-.+.....-..+.|. T Consensus 339 ~~~vi~~eh~~~MKdgaIlaN~GHfd~EId~~~L~~~~~~~~~vr~~v~~~~ 390 (494) T 3ce6_A 339 NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWT 390 (494) T ss_dssp SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEETTEEEEE T ss_pred CCCCCCHHHHHHHCCCCEEECCCCCCCEEEHHHHHCCCCEEEECCCCCEEEE T ss_conf 9887679999832379789634666412338888545865884489832788 No 41 >3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} Probab=57.50 E-value=4.7 Score=19.48 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 0101399999999999999999 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSD 101 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~ 101 (208) .-++|.|||+.+++.+|.-|++ T Consensus 6 VQGntDeAQEEmAWkIAKMIVn 27 (45) T 3im4_C 6 VQGNTDEAQEELAWKIAKMIVS 27 (45) T ss_dssp -----CHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHH T ss_conf 0078488999999999999999 No 42 >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, structural genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A* Probab=48.29 E-value=5.7 Score=18.97 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=24.1 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCH-HCCHHHHHH Q ss_conf 70755879998389980999848502-214889763 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGG-LVDENALAE 43 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~-ivde~aL~~ 43 (208) .++.|+.+.|.+||+|+++-|++--. =||-++|.+ T Consensus 276 n~~vi~~eh~~~mKdgaIl~N~Ghfd~EId~~~L~~ 311 (436) T 3h9u_A 276 NDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKA 311 (436) T ss_dssp CSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHH T ss_pred CCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHHHH T ss_conf 987588999998757968993167740010887860 No 43 >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* Probab=43.15 E-value=15 Score=16.33 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=30.2 Q ss_pred CCCCHHHHCCCCHHHHHHCCCCEEEEECC--CCHHCCHHHHHHH----HCCCCCCEEEECCCCCCCCCC-CHHHCCCC-C Q ss_conf 77984570755879998389980999848--5022148897632----213564014323753113233-20104542-0 Q 537021.9.peg.3 3 VPLTNKTKNILNKENLSKTKSGVCIINCA--RGGLVDENALAEL----LQSGHVAEAGFDVFEVEPALQ-NPLFGLPN-V 74 (208) Q Consensus 3 ~Plt~~T~~li~~~~l~~mk~g~~lIN~a--RG~ivde~aL~~a----L~~g~i~~aalDV~~~EP~~~-~~l~~~~n-v 74 (208) +||||++- +.|.+.. --++|-.+ .+.-+..++-.++ ..+..+..+.+=+--+||+.+ -+++.... + T Consensus 23 VaLtP~~v-----~~L~~~G-~~V~VE~~AG~~s~fsD~eY~~aGA~Iv~~~~~~~adiIl~VKep~~~e~~~l~~~~~~ 96 (401) T 1x13_A 23 VAATPKTV-----EQLLKLG-FTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTL 96 (401) T ss_dssp CSCCHHHH-----HHHHHTT-CEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECSSCCCHHHHTTCCTTCEE T ss_pred ECCCHHHH-----HHHHHCC-CEEEEECCCCCCCCCCHHHHHHHCCEEECHHHHHCCCEEEEECCCCHHHHHHHCCCCEE T ss_conf 35489999-----9999789-99999799863479898999980989926878841998999899998998634369758 Q ss_pred HHHCCCCCC Q ss_conf 021020101 Q 537021.9.peg.3 75 FCAPYLGAS 83 (208) Q Consensus 75 i~TPHiga~ 83 (208) +...|...+ T Consensus 97 ~~~~h~~~~ 105 (401) T 1x13_A 97 VSFIWPAQN 105 (401) T ss_dssp EECCCGGGC T ss_pred EEECCCCCC T ss_conf 985263446 No 44 >3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans} Probab=38.64 E-value=4.9 Score=19.33 Aligned_cols=58 Identities=5% Similarity=0.031 Sum_probs=27.5 Q ss_pred CCEEEEECCCCHHCCHHH----HHHHHCCCCCCEEEECC--CCCCCCCCCHHHCCCCCHHHCCCCC Q ss_conf 980999848502214889----76322135640143237--5311323320104542002102010 Q 537021.9.peg.3 23 SGVCIINCARGGLVDENA----LAELLQSGHVAEAGFDV--FEVEPALQNPLFGLPNVFCAPYLGA 82 (208) Q Consensus 23 ~g~~lIN~aRG~ivde~a----L~~aL~~g~i~~aalDV--~~~EP~~~~~l~~~~nvi~TPHiga 82 (208) ..+++|.+.-|.--.... +...++.... ..+|- ...-+.....+....++++|||.|= T Consensus 126 ~~~~~iGpGlg~~~~~~~~~~~~~~~~~~~~~--~VlDAdal~~l~~~~~~l~~~~~~VLTPH~gE 189 (311) T 3bgk_A 126 ADVVLMGPGLAEDDLAQTTFDVVWQAIEPKQT--LIIDGSAINLLAKRKPAIWPTKQIILTPHQKE 189 (311) T ss_dssp CSEEEECTTCCSSHHHHHHHHHHHHHCCTTSE--EEEETHHHHHHHHCC-CCCSCSCEEEECCSCC T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCC--CEECCHHHHHHHHCHHHHCCCCCEEECCCHHH T ss_conf 54689637988667999999999986444787--53051557877747353066776687788899 No 45 >2ax3_A Hypothetical protein TM0922; putative carbohydrate kinase, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.27A {Thermotoga maritima MSB8} SCOP: c.72.1.4 c.104.1.1 Probab=32.93 E-value=12 Score=17.03 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=28.6 Q ss_pred CCCEEEEECCCCHHCCHHHHHHH-HCCCCCCEEEECCCCCCCCCCCHHHC-CCCCHHHCCCCC Q ss_conf 99809998485022148897632-21356401432375311323320104-542002102010 Q 537021.9.peg.3 22 KSGVCIINCARGGLVDENALAEL-LQSGHVAEAGFDVFEVEPALQNPLFG-LPNVFCAPYLGA 82 (208) Q Consensus 22 k~g~~lIN~aRG~ivde~aL~~a-L~~g~i~~aalDV~~~EP~~~~~l~~-~~nvi~TPHiga 82 (208) +-.+++|...-|.--+...++.. ++.-.. -..+|-=.-.-...+.+.+ ..++|+|||.|= T Consensus 320 ~~~aiviGPGlg~~~~~~~~~~~~~~~~~~-p~VlDAdal~~~~~~~~~~~~~~~ilTPH~gE 381 (502) T 2ax3_A 320 DVDVVAIGPGLGNNEHVREFVNEFLKTLEK-PAVIDADAINVLDTSVLKERKSPAVLTPHPGE 381 (502) T ss_dssp TCSEEEECTTCCCSHHHHHHHHHHHHHCCS-CEEECHHHHHTCCHHHHHTCSSCEEECCCHHH T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEECHHHHHHHHHHHHHHCCCCEEECCCHHH T ss_conf 787799758878788999999999974245-50662255643325543430586576789999 No 46 >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* Probab=29.68 E-value=26 Score=14.77 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=15.1 Q ss_pred CCCCHHHHCCCCHHHHHHCCCCEEEEECC--CCHHCCHHHHHH Q ss_conf 77984570755879998389980999848--502214889763 Q 537021.9.peg.3 3 VPLTNKTKNILNKENLSKTKSGVCIINCA--RGGLVDENALAE 43 (208) Q Consensus 3 ~Plt~~T~~li~~~~l~~mk~g~~lIN~a--RG~ivde~aL~~ 43 (208) +||||++-. .|.+.. --++|--+ ++.-+..++..+ T Consensus 16 vaLtP~~vk-----~L~~~G-~~V~VE~gaG~~~~fsD~~Y~~ 52 (377) T 2vhw_A 16 VAITPAGVA-----ELTRRG-HEVLIQAGAGEGSAITDADFKA 52 (377) T ss_dssp CSCCHHHHH-----HHHHTT-CEEEEETTTTGGGTCCHHHHHH T ss_pred ECCCHHHHH-----HHHHCC-CEEEEECCCCCCCCCCHHHHHH T ss_conf 255899999-----999789-9999968975137989899998 No 47 >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} Probab=26.59 E-value=30 Score=14.42 Aligned_cols=25 Identities=8% Similarity=-0.113 Sum_probs=11.4 Q ss_pred CCCC-CCCHHHCCCCCH-HHCCCCCCC Q ss_conf 1132-332010454200-210201013 Q 537021.9.peg.3 60 VEPA-LQNPLFGLPNVF-CAPYLGAST 84 (208) Q Consensus 60 ~EP~-~~~~l~~~~nvi-~TPHiga~T 84 (208) +||. .+-+++....++ ...|..... T Consensus 92 k~~~~~~~~~l~~~~~~~~~~~~~~~~ 118 (381) T 3p2y_A 92 NPPTSDEISQLKPGSVLIGFLAPRTQP 118 (381) T ss_dssp SCCCHHHHTTSCTTCEEEECCCTTTCH T ss_pred CCCCHHHHHHHCCCCEEEEECCHHHCH T ss_conf 888336655424463598725544455 No 48 >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} SCOP: a.60.2.7 Probab=25.47 E-value=20 Score=15.51 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHH Q ss_conf 999999999998603886200100013444546653699 Q 537021.9.peg.3 91 VAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFM 129 (208) Q Consensus 91 ~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl 129 (208) ++...|++|++|-.-..+....+.+.++...+..++||+ T Consensus 35 ig~~~A~~Iv~~R~f~s~~dL~~v~gi~~~~~~~i~~~l 73 (75) T 2duy_A 35 IGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPYL 73 (75) T ss_dssp CCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGGGE T ss_pred CCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHC T ss_conf 899999999985898989999757898999999999772 No 49 >3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U* Probab=24.31 E-value=31 Score=14.38 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=22.9 Q ss_pred HHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999860388620010001344454665369999 Q 537021.9.peg.3 96 AHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTL 131 (208) Q Consensus 96 a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~L 131 (208) |+.|+.+=.-..+....+++.+.+.....+|+|++. T Consensus 46 A~~Iv~~gpf~s~~dL~~V~Gig~~~~e~ik~yl~~ 81 (104) T 3bz1_U 46 AKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 81 (104) T ss_dssp HHHHHHSCCCSSGGGGGGCTTCCHHHHHHHHHHGGG T ss_pred HHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHCC T ss_conf 999997499798999963899899999999986545 Done!