RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.34_1 (208 letters) >gnl|CDD|30460 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]. Length = 324 Score = 128 bits (322), Expect = 1e-30 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH+PLT +T+ ++N E L+K K G +IN ARGG+VDE+AL L SG +A A DVFE Sbjct: 203 LHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEE 262 Query: 61 EPALQN-PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSN 110 EP + PL+ LPNV P++G ST E+QE+VA +A + YL G V N Sbjct: 263 EPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN 313 >gnl|CDD|35291 KOG0068, KOG0068, KOG0068, D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]. Length = 406 Score = 125 bits (316), Expect = 6e-30 Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 8/199 (4%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVPLT T+ +LN E +K K GV IIN ARGG+VDE AL L SG VA A DV+ Sbjct: 206 LHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPE 265 Query: 61 EPALQ---NPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAII 117 EP + L PNV P+LGAST E+Q ++AI++A +SDY I+G + ++N + Sbjct: 266 EPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDY-INGNSAGSVNAPEV 324 Query: 118 SFEEAPLVKPFMTLADHLGCFIGQLIS--ESIQEIQIIYDGSTAVMNTMVLNSAVLAGIV 175 + E +KP + LA+ LG + ++ + + IY + + +L + + GI+ Sbjct: 325 ALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFSD-GDIALLRADISKGII 383 Query: 176 R-VWRVGANIISAPIIIKE 193 + + N+++A K+ Sbjct: 384 EPIKDIYVNLVNADAKAKQ 402 >gnl|CDD|145796 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 176 Score = 110 bits (278), Expect = 3e-25 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH+PLT +T++++N E L+ K G +IN ARGGLVDE+AL L+SG +A A DVFE Sbjct: 95 LHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEP 154 Query: 61 EPALQ-NPLFGLPNVFCAPYLG 81 EP +PL LPNV P++ Sbjct: 155 EPLPPDHPLLELPNVILTPHIA 176 >gnl|CDD|31252 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]. Length = 324 Score = 99 bits (249), Expect = 5e-22 Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 4/117 (3%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH PLT +T++++N E L+K K G ++N ARGGLVDE AL + L+SG +A AG DVFE Sbjct: 206 LHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFEN 265 Query: 61 EPALQN-PLFGLPN---VFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 EPAL + PL L N V P++ ++T E+++ +A + + GV N +N Sbjct: 266 EPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNEVN 322 >gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]. Length = 336 Score = 97.8 bits (243), Expect = 2e-21 Identities = 42/92 (45%), Positives = 67/92 (72%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 ++ PLT +T++++NK+ + K K G ++N ARG ++DE AL E L+SG +A AG DVFE Sbjct: 223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEP 282 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVA 92 EP + +PL L NV P++G++T+E++EK+A Sbjct: 283 EPPVDHPLLTLDNVVILPHIGSATLETREKMA 314 >gnl|CDD|144107 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 313 Score = 89.3 bits (222), Expect = 7e-19 Identities = 42/113 (37%), Positives = 59/113 (52%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L P T KT +I+ E K V I N GG+++E AL LL+ G A A V E Sbjct: 201 LAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEE 260 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 P + +PL LPNV P++ +T E+QE +A + A + +L G NA+N Sbjct: 261 PPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENLLAFLKGGTPPNAVN 313 >gnl|CDD|35290 KOG0067, KOG0067, KOG0067, Transcription factor CtBP [Transcription]. Length = 435 Score = 51.7 bits (123), Expect = 1e-07 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 11/100 (11%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHV-AEAGFDVFE 59 LH L ++N + + + G ++N ARGGLVDE ALA+ L+SG + A Sbjct: 239 LHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAAPRSFK- 297 Query: 60 VEPALQNPLFGLPNVFCAP----YLGASTVESQEKVAIQL 95 Q PL PN+ C P Y A++VE +E A+++ Sbjct: 298 -----QGPLKDAPNLICTPHTAWYSEAASVELREVAALEI 332 >gnl|CDD|36385 KOG1170, KOG1170, KOG1170, Diacylglycerol kinase [Lipid transport and metabolism]. Length = 1099 Score = 30.8 bits (69), Expect = 0.25 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 27 IINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYLGA-STV 85 IINC R + DE A +SG +A AG A N FG + AP+ A Sbjct: 941 IINCIRQDMDDEEAAIREARSGDLAIAGKFKRLRFTAWFNKRFGTRS---APFAFANIPY 997 Query: 86 ESQEKVAIQLAH-QMSDY 102 + E+V L +S+Y Sbjct: 998 WTSEEVCAWLESIGLSEY 1015 >gnl|CDD|33767 COG4007, COG4007, Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]. Length = 340 Score = 26.4 bits (58), Expect = 5.6 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Query: 165 VLNSAVLAGIVRVWRVGANIISAPI--IIKENAIILSTI 201 ++ + L+G++ + VG II AP I K+ + L T+ Sbjct: 207 LVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM 245 >gnl|CDD|144408 pfam00798, Arena_glycoprot, Arenavirus glycoprotein. Length = 473 Score = 26.1 bits (58), Expect = 6.3 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%) Query: 140 GQLISESIQEIQIIYDGSTAVMNTMVLNSAVLA---GIVRVWRVG 181 GQLIS QEI I +N ++ +++A G+V +W+ G Sbjct: 2 GQLIS-FFQEIPHIIQ---EALNIALIAVSLIAIIKGVVNLWKSG 42 >gnl|CDD|29973 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.. Length = 291 Score = 25.9 bits (57), Expect = 8.2 Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 104 IDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQ 141 +D + L MA+ + +A +V P+ L + G ++ Q Sbjct: 237 LDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQ 274 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0837 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,299,714 Number of extensions: 114202 Number of successful extensions: 237 Number of sequences better than 10.0: 1 Number of HSP's gapped: 233 Number of HSP's successfully gapped: 17 Length of query: 208 Length of database: 6,263,737 Length adjustment: 89 Effective length of query: 119 Effective length of database: 4,340,536 Effective search space: 516523784 Effective search space used: 516523784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (24.8 bits)