RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.34_1
         (208 letters)



>gnl|CDD|30460 COG0111, SerA, Phosphoglycerate dehydrogenase and related
           dehydrogenases [Amino acid transport and metabolism].
          Length = 324

 Score =  128 bits (322), Expect = 1e-30
 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LH+PLT +T+ ++N E L+K K G  +IN ARGG+VDE+AL   L SG +A A  DVFE 
Sbjct: 203 LHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEE 262

Query: 61  EPALQN-PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSN 110
           EP   + PL+ LPNV   P++G ST E+QE+VA  +A  +  YL  G V N
Sbjct: 263 EPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN 313


>gnl|CDD|35291 KOG0068, KOG0068, KOG0068, D-3-phosphoglycerate dehydrogenase,
           D-isomer-specific 2-hydroxy acid dehydrogenase
           superfamily [Amino acid transport and metabolism].
          Length = 406

 Score =  125 bits (316), Expect = 6e-30
 Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 8/199 (4%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVPLT  T+ +LN E  +K K GV IIN ARGG+VDE AL   L SG VA A  DV+  
Sbjct: 206 LHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPE 265

Query: 61  EPALQ---NPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAII 117
           EP      + L   PNV   P+LGAST E+Q ++AI++A  +SDY I+G  + ++N   +
Sbjct: 266 EPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDY-INGNSAGSVNAPEV 324

Query: 118 SFEEAPLVKPFMTLADHLGCFIGQLIS--ESIQEIQIIYDGSTAVMNTMVLNSAVLAGIV 175
           + E    +KP + LA+ LG  +  ++     +  +  IY   +   +  +L + +  GI+
Sbjct: 325 ALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFSD-GDIALLRADISKGII 383

Query: 176 R-VWRVGANIISAPIIIKE 193
             +  +  N+++A    K+
Sbjct: 384 EPIKDIYVNLVNADAKAKQ 402


>gnl|CDD|145796 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
           dehydrogenase, NAD binding domain.  This domain is
           inserted into the catalytic domain, the large
           dehydrogenase and D-lactate dehydrogenase families in
           SCOP. N-terminal portion of which is represented by
           family pfam00389.
          Length = 176

 Score =  110 bits (278), Expect = 3e-25
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LH+PLT +T++++N E L+  K G  +IN ARGGLVDE+AL   L+SG +A A  DVFE 
Sbjct: 95  LHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEP 154

Query: 61  EPALQ-NPLFGLPNVFCAPYLG 81
           EP    +PL  LPNV   P++ 
Sbjct: 155 EPLPPDHPLLELPNVILTPHIA 176


>gnl|CDD|31252 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases
           [Energy production and conversion / Coenzyme metabolism
           / General function prediction only].
          Length = 324

 Score =   99 bits (249), Expect = 5e-22
 Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 4/117 (3%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LH PLT +T++++N E L+K K G  ++N ARGGLVDE AL + L+SG +A AG DVFE 
Sbjct: 206 LHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFEN 265

Query: 61  EPALQN-PLFGLPN---VFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113
           EPAL + PL  L N   V   P++ ++T E+++ +A      +  +   GV  N +N
Sbjct: 266 EPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNEVN 322


>gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase
           (D-isomer-specific 2-hydroxy acid dehydrogenase
           superfamily) [Energy production and conversion].
          Length = 336

 Score = 97.8 bits (243), Expect = 2e-21
 Identities = 42/92 (45%), Positives = 67/92 (72%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           ++ PLT +T++++NK+ + K K G  ++N ARG ++DE AL E L+SG +A AG DVFE 
Sbjct: 223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEP 282

Query: 61  EPALQNPLFGLPNVFCAPYLGASTVESQEKVA 92
           EP + +PL  L NV   P++G++T+E++EK+A
Sbjct: 283 EPPVDHPLLTLDNVVILPHIGSATLETREKMA 314


>gnl|CDD|144107 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid
           dehydrogenase, catalytic domain.  This family represents
           the largest portion of the catalytic domain of
           2-hydroxyacid dehydrogenases as the NAD binding domain
           is inserted within the structural domain.
          Length = 313

 Score = 89.3 bits (222), Expect = 7e-19
 Identities = 42/113 (37%), Positives = 59/113 (52%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           L  P T KT +I+  E     K  V I N   GG+++E AL  LL+ G  A A   V E 
Sbjct: 201 LAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEE 260

Query: 61  EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113
            P + +PL  LPNV   P++  +T E+QE +A + A  +  +L  G   NA+N
Sbjct: 261 PPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENLLAFLKGGTPPNAVN 313


>gnl|CDD|35290 KOG0067, KOG0067, KOG0067, Transcription factor CtBP
           [Transcription].
          Length = 435

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHV-AEAGFDVFE 59
           LH  L      ++N   + + + G  ++N ARGGLVDE ALA+ L+SG +   A      
Sbjct: 239 LHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAAPRSFK- 297

Query: 60  VEPALQNPLFGLPNVFCAP----YLGASTVESQEKVAIQL 95
                Q PL   PN+ C P    Y  A++VE +E  A+++
Sbjct: 298 -----QGPLKDAPNLICTPHTAWYSEAASVELREVAALEI 332


>gnl|CDD|36385 KOG1170, KOG1170, KOG1170, Diacylglycerol kinase [Lipid transport and
            metabolism].
          Length = 1099

 Score = 30.8 bits (69), Expect = 0.25
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 27   IINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYLGA-STV 85
            IINC R  + DE A     +SG +A AG        A  N  FG  +   AP+  A    
Sbjct: 941  IINCIRQDMDDEEAAIREARSGDLAIAGKFKRLRFTAWFNKRFGTRS---APFAFANIPY 997

Query: 86   ESQEKVAIQLAH-QMSDY 102
             + E+V   L    +S+Y
Sbjct: 998  WTSEEVCAWLESIGLSEY 1015


>gnl|CDD|33767 COG4007, COG4007, Predicted dehydrogenase related to H2-forming
           N5,N10-methylenetetrahydromethanopterin dehydrogenase
           [General function prediction only].
          Length = 340

 Score = 26.4 bits (58), Expect = 5.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 165 VLNSAVLAGIVRVWRVGANIISAPI--IIKENAIILSTI 201
           ++ +  L+G++  + VG  II AP   I K+  + L T+
Sbjct: 207 LVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM 245


>gnl|CDD|144408 pfam00798, Arena_glycoprot, Arenavirus glycoprotein. 
          Length = 473

 Score = 26.1 bits (58), Expect = 6.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 140 GQLISESIQEIQIIYDGSTAVMNTMVLNSAVLA---GIVRVWRVG 181
           GQLIS   QEI  I       +N  ++  +++A   G+V +W+ G
Sbjct: 2   GQLIS-FFQEIPHIIQ---EALNIALIAVSLIAIIKGVVNLWKSG 42


>gnl|CDD|29973 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
           known as methionyl aminopeptidase and peptidase M.
           Catalyzes release of N-terminal amino acids,
           preferentially methionine, from peptides and
           arylamides..
          Length = 291

 Score = 25.9 bits (57), Expect = 8.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 104 IDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQ 141
           +D +    L MA+ +  +A +V P+  L +  G ++ Q
Sbjct: 237 LDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQ 274


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0837    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,299,714
Number of extensions: 114202
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 17
Length of query: 208
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,340,536
Effective search space: 516523784
Effective search space used: 516523784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)