RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= 537021.9.peg.34_1
(208 letters)
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
serine biosynthesis, structural genomics, PSI, protein
structure initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} (A:98-282)
Length = 185
Score = 86.1 bits (212), Expect = 3e-18
Identities = 43/81 (53%), Positives = 55/81 (67%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+H+P T +T +++KE L+KTK GV I+N ARGGLVDE ALA+ + GHV AG DVF
Sbjct: 105 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT 164
Query: 61 EPALQNPLFGLPNVFCAPYLG 81
EP +PLF L V P+LG
Sbjct: 165 EPCTDSPLFELAQVVVTPHLG 185
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+
(A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288)
Length = 190
Score = 81.8 bits (201), Expect = 6e-17
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+ P T +T+ NK + G ++N ARG LVD + L++G +A AGFDVF E
Sbjct: 111 NAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 170
Query: 62 PALQNPLFGLPNVFCAPYLG 81
P + + LPN F P++G
Sbjct: 171 PNINEGYYDLPNTFLFPHIG 190
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase,
structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290)
Length = 192
Score = 81.4 bits (200), Expect = 8e-17
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
L VPLT +T +++N+E L K +IN ARG +VD NAL + L+ G +A AG DVFE
Sbjct: 112 LAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 171
Query: 61 EPALQNPLFGLPNVFCAPYLG 81
EP LF L NV P++G
Sbjct: 172 EPYYNEELFKLDNVVLTPHIG 192
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD,
3D-structure, structural genomics, NPPSFA; HET: MSE NAD;
2.12A {Aquifex aeolicus VF5} (A:)
Length = 334
Score = 81.3 bits (199), Expect = 9e-17
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LHVP T +T + +N+E +S K GV +IN ARG +VD +AL Q G + G DVFE
Sbjct: 200 LHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFED 259
Query: 61 EPAL----------------QNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLI 104
E L L NV P++ T +S E++ + + ++
Sbjct: 260 EEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVK 319
Query: 105 DGVVSNALNMA 115
+ N
Sbjct: 320 GDLEQIKGNFV 330
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: NAD; 1.77A {Sulfolobus
tokodaii} (A:100-285)
Length = 186
Score = 79.5 bits (195), Expect = 3e-16
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
HV ++ K I++ K V I+N +R V+ AL + ++ G V DVF E
Sbjct: 104 HVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNE 163
Query: 62 PALQN---PLFGLPNVFCAPYLG 81
P + L V ++G
Sbjct: 164 PPKEEWELELLKHERVIVTTHIG 186
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein;
structural genomics, PSI-2, protein structure
initiative; 1.90A {Ralstonia solanacearum} (A:108-302)
Length = 195
Score = 78.0 bits (191), Expect = 9e-16
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
H+ L ++T++I+ +L++ K +N +R LV+EN + L G A DVFE E
Sbjct: 115 HLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETE 174
Query: 62 PALQ-NPLFGLPNVFCAPYLG 81
P LQ + L + N C P++G
Sbjct: 175 PILQGHTLLRMENCICTPHIG 195
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, serine
metabolism; HET: NAD; 1.70A {Homo sapiens} (A:121-305)
Length = 185
Score = 77.3 bits (189), Expect = 1e-15
Identities = 37/80 (46%), Positives = 44/80 (55%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
H PL T +LN ++ K GV ++NCARGG+VDE AL LQSG A A DVF E
Sbjct: 106 HTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE 165
Query: 62 PALQNPLFGLPNVFCAPYLG 81
P L NV P+LG
Sbjct: 166 PPRDRALVDHENVISCPHLG 185
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} (A:145-334)
Length = 190
Score = 77.2 bits (189), Expect = 1e-15
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
L+ PL +T++++N E L K G I+N ARG L D +A+A L+SG +A DV+
Sbjct: 109 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 168
Query: 61 EPALQ-NPLFGLPNVFCAPYLG 81
+PA + +P +P P++
Sbjct: 169 QPAPKDHPWRTMPYNGMTPHIS 190
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A
{Pyrobaculum aerophilum} (A:81-263)
Length = 183
Score = 76.8 bits (188), Expect = 2e-15
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+PL T+ ++ ++L+ +N R ++D + + +L+ DV+
Sbjct: 100 CALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG 159
Query: 61 EPAL--QNPLFGLPNVFCAPYLGA 82
F LPNV P++
Sbjct: 160 RNDFAKDAEFFSLPNVVATPWVAG 183
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infectious disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
(A:112-299)
Length = 188
Score = 76.5 bits (187), Expect = 2e-15
Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LHVP + T ++ + L K K G +IN ARG VD ALA++LQ GH+A A DVF V
Sbjct: 103 LHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPV 162
Query: 61 EPA-----LQNPLFGLPNVFCAPYLG 81
EPA PL GL NV P++G
Sbjct: 163 EPASNGERFSTPLQGLENVILTPHIG 188
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor binding domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A* (A:119-301)
Length = 183
Score = 75.7 bits (185), Expect = 4e-15
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+ PLT +T +I+N+E + +IN RG VDE L L G + AG DVFE
Sbjct: 103 VACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFER 162
Query: 61 EPALQNPLFGLPNVFCAPYLG 81
EP + LFGL NV P++G
Sbjct: 163 EPEVPEKLFGLENVVLLPHVG 183
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii OT3} (A:98-283)
Length = 186
Score = 74.2 bits (181), Expect = 1e-14
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
HVPL T +++N+E L K +IN +RG +VD NAL + L+ G +A AG DVFE E
Sbjct: 106 HVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEE 165
Query: 62 PALQN-PLFGLPNVFCAPYLG 81
P ++ PL NV P++G
Sbjct: 166 PLPKDHPLTKFDNVVLTPHIG 186
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenase, oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} (A:101-297)
Length = 197
Score = 73.8 bits (180), Expect = 1e-14
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LHVP + +I+N+ + K G +IN AR L+D A+ L+SG +A G D +E
Sbjct: 103 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 162
Query: 61 EPALQ--------------NPLFGLPNVFCAPYL 80
E + L G+PNV +P++
Sbjct: 163 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHI 196
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P)
rossmann fold, formate/glycerate dehydrogenase
substrate-binding domain, oxidoreductase; HET: NDP;
2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297)
Length = 190
Score = 74.1 bits (181), Expect = 1e-14
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
LT T+ + NK+ K K IN +RG +V+++ L + L SG +A AG DV E
Sbjct: 110 ACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 169
Query: 62 PALQN-PLFGLPNVFCAPYLG 81
P N PL L N P++G
Sbjct: 170 PLPTNHPLLTLKNCVILPHIG 190
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II,
11143J, structural genomics, protein structure
initiative; 2.20A {Thermoplasma acidophilum} (A:79-259)
Length = 181
Score = 72.9 bits (178), Expect = 3e-14
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+PLT+KT+ +N L+ + + I+N AR +V + L+ DV+ E
Sbjct: 102 AIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNE 161
Query: 62 PALQNPLFGLPNVFCAPYLGA 82
P L N +P++
Sbjct: 162 PE--ITETNLRNAILSPHVAG 180
>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm,
NAD, structural genomics; HET: NDP NDB EPE; 2.14A
{Salmonella enterica subsp} (A:96-280)
Length = 185
Score = 72.2 bits (176), Expect = 5e-14
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+P T +T I+N E L + G ++N ARG V E L L SG + A DVF
Sbjct: 104 NLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQ 163
Query: 61 EPALQ-NPLFGLPNVFCAPYLG 81
EP Q +PL+ P V P++
Sbjct: 164 EPLPQESPLWRHPRVAXTPHIA 185
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family
protein; structural genomics, protein structure
initiative; 1.80A {Aeromonas salmonicida subsp}
(A:98-281)
Length = 184
Score = 72.3 bits (176), Expect = 5e-14
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+P T +T ++ K G + N RG ++E L L++G + A DVFE E
Sbjct: 104 VLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 163
Query: 62 PALQ-NPLFGLPNVFCAP 78
P +PL+G PN+ P
Sbjct: 164 PLPADSPLWGQPNLIITP 181
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase;
structural variant of the BAB rossmann fold,
oxidoreductase; 1.98A {Acidaminococcus fermentans}
(A:102-299)
Length = 198
Score = 71.9 bits (175), Expect = 5e-14
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+H P + ++ ++ L K K G ++NCARG LVD A+ E ++SG + G DV +
Sbjct: 103 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 162
Query: 61 EPA---------------LQNPLFGLPNVFCAPYLG 81
E + + + P V P+LG
Sbjct: 163 EASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLG 198
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2,
protein structure initiative; 2.20A {Lactobacillus
plantarum} (A:92-281)
Length = 190
Score = 71.9 bits (175), Expect = 6e-14
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+PLT T ++ + E +TK +IN RG VD AL L ++ A DV E E
Sbjct: 107 ALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPE 166
Query: 62 PALQN-PLFGLPNVFCAPYLGAS 83
P + PL+ +V P++
Sbjct: 167 PLPTDHPLWQRDDVLITPHISGQ 189
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus
thermophilus HB8} (A:97-279)
Length = 183
Score = 70.7 bits (172), Expect = 1e-13
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LH PLT +T +LN+E L K G ++N ARG LVD AL E L+ AG DV +
Sbjct: 103 LHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLF-GAGLDVTDP 161
Query: 61 EPALQN-PLFGLPNVFCAPYLG 81
EP PL+ LPN P++G
Sbjct: 162 EPLPPGHPLYALPNAVITPHIG 183
>2o4c_A Erythronate-4-phosphate dehydrogenase;
erythronate-4-phsphate, NAD, tartrate, phosphate ION,
oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas
aeruginosa} (A:91-257)
Length = 167
Score = 70.9 bits (173), Expect = 1e-13
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
L+ + T+++L++ L+ + G ++N +RG +VD AL LL+ G E DV+E
Sbjct: 87 LNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEG 146
Query: 61 EPALQNPLFGLPNVFCAPYLGA 82
EP +P + P++
Sbjct: 147 EPQA-DPELAARCLIATPHIAG 167
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B (A:112-306)
Length = 195
Score = 70.8 bits (172), Expect = 1e-13
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
VP T +++++ + K G I+N ARG ++ ++AL L+SG + AG DV E E
Sbjct: 116 SVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 175
Query: 62 PALQNPLFGLPNVFCAPYLG 81
P + L + +V ++G
Sbjct: 176 PQVSKELIEMKHVTLTTHIG 195
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy
acid dehydrogenase, cofactor regenerator, yeast, CBFDH;
HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
(A:118-313)
Length = 196
Score = 70.4 bits (171), Expect = 2e-13
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
++ PL TK ++NKE LSK K G ++N ARG + +A L+SG + G DV+
Sbjct: 110 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 169
Query: 61 EPALQN------PLFGLPNVFCAPYL 80
+PA ++ P+
Sbjct: 170 QPAPKDHPWRDMRNKYGAGNAMTPHY 195
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepressor,
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
(A:117-311)
Length = 195
Score = 69.2 bits (168), Expect = 4e-13
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LH L +++N + + + G ++N ARGGLVDE ALA+ L+ G + A DV E
Sbjct: 113 LHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 172
Query: 61 EPAL--QNPLFGLPNVFCAP 78
EP Q PL PN+ C P
Sbjct: 173 EPFSFSQGPLKDAPNLICTP 192
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} (A:138-364)
Length = 227
Score = 68.8 bits (167), Expect = 6e-13
Identities = 11/111 (9%), Positives = 31/111 (27%), Gaps = 11/111 (9%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+ +LN + + K+ V + L D L + G V + +
Sbjct: 94 CDIFAPCALGAVLNDFTIPQLKAKVIAGSA-DNQLKDPRHGKYLHELGIVYAPDYVINAG 152
Query: 61 EPAL----------QNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSD 101
+ + ++ + + + + A +M++
Sbjct: 153 GVINVADELYGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVAADRMAE 203
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} (A:103-299)
Length = 197
Score = 68.4 bits (166), Expect = 7e-13
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LHVP +++N E+++K K V I+N +RG LVD +A+ L SG + DV+E
Sbjct: 103 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 162
Query: 61 EPALQ--------------NPLFGLPNVFCAP 78
E + L PNV P
Sbjct: 163 EVGIFNEDWEGKEFPDARLADLIARPNVLVTP 194
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural
genomics, SGC stockholm, structural genomics consortium,
SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A
{Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A*
1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A*
(A:190-346)
Length = 157
Score = 67.9 bits (165), Expect = 9e-13
Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEV 60
T +I+ E+ + + + N + L + + D + +
Sbjct: 80 IFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTM 139
Query: 61 EPALQNPLFGLPNVFCAPYLG 81
L + LG
Sbjct: 140 ANGRHIILLAEGRL---VNLG 157
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
regulation phosphoglycerate dehydrogenase PGDH,
oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
(A:101-288)
Length = 188
Score = 67.3 bits (163), Expect = 2e-12
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LHVP TKN + +S K G +IN +RG +VD ALA+ L S H+A A DVF
Sbjct: 103 LHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPT 162
Query: 61 EPALQ-----NPLFGLPNVFCAPYLG 81
EPA +PL NV P++G
Sbjct: 163 EPATNSDPFTSPLAEFDNVLLTPHIG 188
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
on protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii OT3} (A:95-286)
Length = 192
Score = 66.5 bits (161), Expect = 2e-12
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+PLT T +I+N+E + K + G ++N RG LVDE A+ E ++ G + DVFE E
Sbjct: 113 ALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKE 171
Query: 62 PALQ-NPLFGLPNVFCAP 78
P + P
Sbjct: 172 PVREHELFKYEWETVLTP 189
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
serine biosynthesis, structural genomics, PSI, protein
structure initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} (A:323-452)
Length = 130
Score = 65.9 bits (161), Expect = 3e-12
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 125 VKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVR-VWRVGAN 183
V P++ L LG G L E + + G A VL + L G+ V
Sbjct: 2 VAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVIEDAVT 61
Query: 184 IISAPIIIKENAIILSTIKRDKSGV 208
++AP + E + K +S
Sbjct: 62 FVNAPALAAERGVTAEICKASESPN 86
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD,
one-carbon metabolism; HET: NAD; 2.30A {Burkholderia
pseudomallei 1710B} PDB: 3glq_A* (A:247-409)
Length = 163
Score = 65.6 bits (159), Expect = 4e-12
Identities = 6/73 (8%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+++N +++ + + N + A Q ++ D
Sbjct: 89 IFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWENIK-PQVDHIIFP 147
Query: 62 PALQNPLFGLPNV 74
+ L +
Sbjct: 148 DGKRVILLAEGRL 160
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex,
hydrolase, NAD, one-carbon metabolism, phosphoprotein;
HET: NAD; 2.25A {Homo sapiens} (A:200-354)
Length = 155
Score = 64.5 bits (156), Expect = 1e-11
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLV-DENALAELLQSGHVAEAGFDVFEV 60
V KN++ +E+L + K+ + N D +L + + D
Sbjct: 79 IVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIW 138
Query: 61 EPALQNPLFGLPNV 74
+ L +
Sbjct: 139 PDGKRIVLLAEGRL 152
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of
dimers, NAD binding domain, 37 amino acid insertional
region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis
H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* (A:253-410)
Length = 158
Score = 59.8 bits (144), Expect = 2e-10
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEV 60
V K+I+ E++ K + N +D L + + D++
Sbjct: 80 IVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTF 139
Query: 61 EPALQ-NPLFGLPNVFCAPYLG 81
+ + + LG
Sbjct: 140 GDTGRSIIVLSEGRL---LNLG 158
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
serine biosynthesis, structural genomics, PSI, protein
structure initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} (A:1-97,A:283-322)
Length = 137
Score = 58.7 bits (142), Expect = 5e-10
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 53 AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112
G D +V+ A G+ V AP AST E+Q++ +A + L V +A+
Sbjct: 75 VGLDNVDVDAATAR---GVL-VVNAP--TASTAEAQDRAGTDVAESVRLALAGEFVPDAV 128
Query: 113 NMAIISFEE 121
N+ E
Sbjct: 129 NVGGGVVNE 137
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A* (A:1-204)
Length = 204
Score = 58.8 bits (141), Expect = 5e-10
Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 2/86 (2%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+ + +T + K+ + + L +L V E
Sbjct: 98 VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEK 157
Query: 61 EPAL--QNPLFGLPNVFCAPYLGAST 84
+ L+ V P
Sbjct: 158 SGVEYSLDNLYEGKKVILTPTKKTDK 183
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET:
NAD; 2.00A {Phormidium lapideum} (A:124-315)
Length = 192
Score = 57.9 bits (139), Expect = 1e-09
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAE-AGFDVFEV 60
+ + ++ + + ++G I++ A L + E G + V
Sbjct: 115 VLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGV 174
Query: 61 EP 62
Sbjct: 175 PN 176
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD;
1.90A {Aquifex aeolicus VF5} (A:1-172)
Length = 172
Score = 57.3 bits (137), Expect = 2e-09
Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 2/95 (2%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+ + +T + K+ + + L +L V E
Sbjct: 66 VXLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEK 125
Query: 61 EPAL--QNPLFGLPNVFCAPYLGASTVESQEKVAI 93
+ L+ V P + +
Sbjct: 126 SGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRV 160
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.71A {Thermus thermophilus HB8}
(A:123-315)
Length = 193
Score = 56.8 bits (136), Expect = 2e-09
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAE-AGFDVFEV 60
+ K ++ ++ LS K G I++ A + + G + V
Sbjct: 115 VLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGV 174
Query: 61 EP 62
Sbjct: 175 AN 176
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET:
NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A*
2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* (A:125-318)
Length = 194
Score = 55.6 bits (133), Expect = 4e-09
Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 6/80 (7%)
Query: 1 LHVPLTNK-TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFE 59
V + +++ ++ K G +++ A +F
Sbjct: 113 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFY 172
Query: 60 VEPALQ-----NPLFGLPNV 74
+ + L N
Sbjct: 173 CVANMPASVPKTSTYALTNA 192
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase,
oxidative deamination mechanism, oxidoreductase; HET:
PHE NAD; 1.25A {Rhodococcus SP} (A:145-355)
Length = 211
Score = 51.8 bits (123), Expect = 6e-08
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 10/91 (10%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
V ++ E V A + DE A L G + F
Sbjct: 89 DVFAPCAMGGVITTEVARTLDCSVVAGA-ANNVIADEAASDILHARGILYAPDFVANAGG 147
Query: 62 PALQNPLFGLPNVFCAPYLGASTVESQEKVA 92
++ LG S E+
Sbjct: 148 A---------IHLVGREVLGWSESVVHERAV 169
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine
biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A
{Aspergillus clavatus} PDB: 3k5h_A* (A:1-135)
Length = 135
Score = 51.2 bits (122), Expect = 1e-07
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54
+T + +++ + L + S V I + +N + H+ + G
Sbjct: 86 TCDVVTAEIEHV-DTYALEEVASEVKIEPSWQAIRTIQNKFNQ---KEHLRKYG 135
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A
{Plasmodium falciparum 3D7} (A:227-394)
Length = 168
Score = 50.7 bits (120), Expect = 1e-07
Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 13/87 (14%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+++ E+L K K+ + N + + G + V+
Sbjct: 89 FFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQ-------VNELFNYKGIHIENVK 141
Query: 62 PAL-QNPLFGLPNVFC-----APYLGA 82
P + + L + LG
Sbjct: 142 PQVDRITLPNGNKIIVLARGRLLNLGC 168
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
regulation phosphoglycerate dehydrogenase PGDH,
oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
(A:1-100,A:289-321)
Length = 133
Score = 50.2 bits (120), Expect = 2e-07
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 13 LNKENLSKTKSGVCIINCARGGLVDENALAEL--LQSGHVAEAGFDVFEVEPALQNPLFG 70
L+ E L ++ I + E+ + L + G + +++ A + G
Sbjct: 36 LDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKR---G 92
Query: 71 LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113
+P VF AP ST E+QE + +++A ++ Y +G +A+N
Sbjct: 93 IP-VFNAP--FGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVN 132
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infectious disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
(A:1-111,A:300-332)
Length = 144
Score = 49.5 bits (118), Expect = 4e-07
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 13 LNKENLSKTKSGVCIINCARGGLVDENALAEL--LQSGHVAEAGFDVFEVEPALQNPLFG 70
L+K +L K S II + E A L + G + E++ A + G
Sbjct: 47 LDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKR---G 103
Query: 71 LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113
+P VF AP ST E+QE++ ++ ++ +Y G A+N
Sbjct: 104 IP-VFNAP--FGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVN 143
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia
SP} (A:1-195)
Length = 195
Score = 48.8 bits (115), Expect = 5e-07
Identities = 6/130 (4%), Positives = 35/130 (26%), Gaps = 5/130 (3%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+ + L + + ++ + + + G ++ + +
Sbjct: 71 VVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVXPERADITYFIGHPCHPPLFN 130
Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120
+ + + + E+ + + + S ++ E
Sbjct: 131 DETDPAARTDYHGGIAKQAIVCALXQGPEE-HYAIGAD----ICETXWSPVTRTHRVTTE 185
Query: 121 EAPLVKPFMT 130
+ +++P ++
Sbjct: 186 QLAILEPGLS 195
>3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC,
tyrosine biosynthesis, EC:1.3.12.-, structural genomics;
2.46A {Streptococcus thermophilus lmg 18311}
(A:1-179,A:292-317)
Length = 205
Score = 47.4 bits (111), Expect = 1e-06
Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 6/103 (5%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
L VP+ + +L + + + + E A L
Sbjct: 71 LAVPIKQTXAYLKELADLDLKDNVIITDAGSTKREIVEAAERYLTGKNVQFVGSHPXAGS 130
Query: 61 EPA----LQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQM 99
+ LF P E + +
Sbjct: 131 HKSGAIAADVTLFENAYYIFTPTSLTKETTIPE--LKDILSGL 171
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, serine
metabolism; HET: NAD; 1.70A {Homo sapiens}
(A:1-120,A:306-335)
Length = 150
Score = 47.3 bits (112), Expect = 2e-06
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 53 AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVV 108
G D ++E A + G+ V P AST E+Q + ++A Q D + +
Sbjct: 98 TGVDNVDLEAATRK---GIL-VMNTP--NASTKEAQSRCGEEIAVQFVDMVKGKSL 147
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative; 2.60A {Corynebacterium glutamicum atcc
13032} (A:1-186,A:304-341)
Length = 224
Score = 46.1 bits (108), Expect = 4e-06
Identities = 9/126 (7%), Positives = 26/126 (20%), Gaps = 1/126 (0%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
++L+ + +G + + + D +
Sbjct: 74 LAVPXTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYDAVKARNXQHRYVGSHPXAGTANSG 133
Query: 62 P-ALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120
A + LF + + L G ++
Sbjct: 134 WSASXDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQXALAVGAEVVPSRVSPTITS 193
Query: 121 EAPLVK 126
P+++
Sbjct: 194 SRPVLR 199
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7;
2.5A {Homo sapiens} (A:1-193)
Length = 193
Score = 45.7 bits (107), Expect = 4e-06
Identities = 3/98 (3%), Positives = 12/98 (12%), Gaps = 7/98 (7%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
V K+++ + + + +
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 61 EPALQNPLFGLPNVFCAPYLGAS--TVESQEKVAIQLA 96
+ E +
Sbjct: 152 G-----NQQLSNDGMLVILAAGDRGLYEDCSSCFQAMG 184
>2rir_A Dipicolinate synthase, A chain; structural genomics,
APC1343, PSI-2, protein structure initiative, midwest
center for structural genomics; HET: MSE NAP; 2.79A
{Bacillus subtilis} (A:128-271)
Length = 144
Score = 45.4 bits (107), Expect = 6e-06
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 9 TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54
ILN+ LS I++ A + AE + G
Sbjct: 97 PSXILNQTVLSSXTPKTLILDLASRPGGTDFKYAEKQGIKALLAPG 142
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY
crystallography structure, oxidoreductase; HET: OMT NAP;
1.55A {Synechocystis SP} (A:1-166)
Length = 166
Score = 44.1 bits (103), Expect = 1e-05
Identities = 5/85 (5%), Positives = 16/85 (18%), Gaps = 1/85 (1%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+ + + ++ + + + A ++L
Sbjct: 61 IFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPXAGTAAQ 120
Query: 61 EP-ALQNPLFGLPNVFCAPYLGAST 84
+ LF P
Sbjct: 121 GIDGAEENLFVNAPYVLTPTEYTDP 145
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative; HET: MSE TAR; 2.10A
{Bacillus halodurans} (A:126-269)
Length = 144
Score = 43.9 bits (103), Expect = 1e-05
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 3 VPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54
V + ++ L++ S +I+ A + AE + G
Sbjct: 91 VCINTIPALVVTANVLAEXPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPG 142
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain, oxidoreductase; 2.00A
{Pseudomonas aeruginosa} (A:1-182)
Length = 182
Score = 41.8 bits (97), Expect = 6e-05
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 12/94 (12%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
+ P + +E K G + G + N + V A DV +
Sbjct: 78 ILTPDE-FQGRLYKEEIEPNLKKGATLAFA-HGFSIHYNQV--------VPRADLDVIMI 127
Query: 61 EPALQNPLF--GLPNVFCAPYLGASTVESQEKVA 92
P P L A ++
Sbjct: 128 APKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAK 161
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural genomics; HET: NDP; 1.80A
{Thermus thermophilus HB8} (A:1-157)
Length = 157
Score = 36.0 bits (82), Expect = 0.004
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
+P T + + + G ++ G LAE L+ V V
Sbjct: 62 CLPTTREVYEVAEAL-YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGT 120
Query: 62 PALQNPLFGL 71
+ +
Sbjct: 121 SGAEAGTLTV 130
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A (A:127-241)
Length = 115
Score = 27.6 bits (61), Expect = 1.4
Identities = 4/44 (9%), Positives = 10/44 (22%), Gaps = 1/44 (2%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAEL 44
+ K ++ N K +++ E
Sbjct: 66 NTTSVGLKDEDPEI-FNYDLIKKDHVVVDIIYKETKLLKKAKEK 108
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii OT3} (A:1-97,A:284-307)
Length = 121
Score = 26.8 bits (59), Expect = 2.1
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 53 AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103
G D +VE A + G+ V AP ASTVE+QE+ +++A ++ L
Sbjct: 75 VGLDNIDVEAAKEK---GIE-VVNAP--AASTVEAQERAGVEVAEKVVKIL 119
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
monooxygenase; 1.70A {Methylococcus capsulatus str}
(D:1-248)
Length = 248
Score = 25.6 bits (56), Expect = 4.7
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 111 ALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQE 149
L + + PL+ A G I + SI+
Sbjct: 189 NLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIET 227
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,419,207
Number of extensions: 57654
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 59
Length of query: 208
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 123
Effective length of database: 2,082,624
Effective search space: 256162752
Effective search space used: 256162752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)