RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.34_1
         (208 letters)



>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           serine biosynthesis, structural genomics, PSI, protein
           structure initiative; HET: TAR; 2.30A {Mycobacterium
           tuberculosis} (A:98-282)
          Length = 185

 Score = 86.1 bits (212), Expect = 3e-18
 Identities = 43/81 (53%), Positives = 55/81 (67%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           +H+P T +T  +++KE L+KTK GV I+N ARGGLVDE ALA+ +  GHV  AG DVF  
Sbjct: 105 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT 164

Query: 61  EPALQNPLFGLPNVFCAPYLG 81
           EP   +PLF L  V   P+LG
Sbjct: 165 EPCTDSPLFELAQVVVTPHLG 185


>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+
           (A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288)
          Length = 190

 Score = 81.8 bits (201), Expect = 6e-17
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
           + P T +T+   NK  +     G  ++N ARG LVD   +   L++G +A AGFDVF  E
Sbjct: 111 NAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 170

Query: 62  PALQNPLFGLPNVFCAPYLG 81
           P +    + LPN F  P++G
Sbjct: 171 PNINEGYYDLPNTFLFPHIG 190


>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase,
           structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
           horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290)
          Length = 192

 Score = 81.4 bits (200), Expect = 8e-17
 Identities = 38/81 (46%), Positives = 50/81 (61%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           L VPLT +T +++N+E L   K    +IN ARG +VD NAL + L+ G +A AG DVFE 
Sbjct: 112 LAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 171

Query: 61  EPALQNPLFGLPNVFCAPYLG 81
           EP     LF L NV   P++G
Sbjct: 172 EPYYNEELFKLDNVVLTPHIG 192


>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD,
           3D-structure, structural genomics, NPPSFA; HET: MSE NAD;
           2.12A {Aquifex aeolicus VF5} (A:)
          Length = 334

 Score = 81.3 bits (199), Expect = 9e-17
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 16/131 (12%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVP T +T + +N+E +S  K GV +IN ARG +VD +AL    Q G  +  G DVFE 
Sbjct: 200 LHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFED 259

Query: 61  EPAL----------------QNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLI 104
           E  L                   L    NV   P++   T +S E++  +    +  ++ 
Sbjct: 260 EEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVK 319

Query: 105 DGVVSNALNMA 115
             +     N  
Sbjct: 320 GDLEQIKGNFV 330


>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; HET: NAD; 1.77A {Sulfolobus
           tokodaii} (A:100-285)
          Length = 186

 Score = 79.5 bits (195), Expect = 3e-16
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
           HV ++   K I++       K  V I+N +R   V+  AL + ++ G V     DVF  E
Sbjct: 104 HVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNE 163

Query: 62  PALQN---PLFGLPNVFCAPYLG 81
           P  +     L     V    ++G
Sbjct: 164 PPKEEWELELLKHERVIVTTHIG 186


>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein;
           structural genomics, PSI-2, protein structure
           initiative; 1.90A {Ralstonia solanacearum} (A:108-302)
          Length = 195

 Score = 78.0 bits (191), Expect = 9e-16
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
           H+ L ++T++I+   +L++ K     +N +R  LV+EN +   L  G    A  DVFE E
Sbjct: 115 HLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETE 174

Query: 62  PALQ-NPLFGLPNVFCAPYLG 81
           P LQ + L  + N  C P++G
Sbjct: 175 PILQGHTLLRMENCICTPHIG 195


>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           phosphoglycerate dehydrogenase deficiency, serine
           metabolism; HET: NAD; 1.70A {Homo sapiens} (A:121-305)
          Length = 185

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 37/80 (46%), Positives = 44/80 (55%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
           H PL   T  +LN    ++ K GV ++NCARGG+VDE AL   LQSG  A A  DVF  E
Sbjct: 106 HTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE 165

Query: 62  PALQNPLFGLPNVFCAPYLG 81
           P     L    NV   P+LG
Sbjct: 166 PPRDRALVDHENVISCPHLG 185


>2nac_A NAD-dependent formate dehydrogenase;
           oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
           SP} (A:145-334)
          Length = 190

 Score = 77.2 bits (189), Expect = 1e-15
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           L+ PL  +T++++N E L   K G  I+N ARG L D +A+A  L+SG +A    DV+  
Sbjct: 109 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 168

Query: 61  EPALQ-NPLFGLPNVFCAPYLG 81
           +PA + +P   +P     P++ 
Sbjct: 169 QPAPKDHPWRTMPYNGMTPHIS 190


>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A
           {Pyrobaculum aerophilum} (A:81-263)
          Length = 183

 Score = 76.8 bits (188), Expect = 2e-15
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
             +PL   T+ ++  ++L+        +N  R  ++D + +  +L+         DV+  
Sbjct: 100 CALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG 159

Query: 61  EPAL--QNPLFGLPNVFCAPYLGA 82
                     F LPNV   P++  
Sbjct: 160 RNDFAKDAEFFSLPNVVATPWVAG 183


>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
           structural genomics center for infectious disease,
           brucellosis; 2.15A {Brucella melitensis biovar abortus}
           (A:112-299)
          Length = 188

 Score = 76.5 bits (187), Expect = 2e-15
 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVP +  T  ++ +  L K K G  +IN ARG  VD  ALA++LQ GH+A A  DVF V
Sbjct: 103 LHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPV 162

Query: 61  EPA-----LQNPLFGLPNVFCAPYLG 81
           EPA        PL GL NV   P++G
Sbjct: 163 EPASNGERFSTPLQGLENVILTPHIG 188


>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
           substrate binding domain, cofactor binding domain,
           oxidoreductase; 1.47A {Solenostemon scutellarioides}
           PDB: 3baz_A* (A:119-301)
          Length = 183

 Score = 75.7 bits (185), Expect = 4e-15
 Identities = 33/81 (40%), Positives = 44/81 (54%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           +  PLT +T +I+N+E +        +IN  RG  VDE  L   L  G +  AG DVFE 
Sbjct: 103 VACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFER 162

Query: 61  EPALQNPLFGLPNVFCAPYLG 81
           EP +   LFGL NV   P++G
Sbjct: 163 EPEVPEKLFGLENVVLLPHVG 183


>1wwk_A Phosphoglycerate dehydrogenase; riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
           horikoshii OT3} (A:98-283)
          Length = 186

 Score = 74.2 bits (181), Expect = 1e-14
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
           HVPL   T +++N+E L   K    +IN +RG +VD NAL + L+ G +A AG DVFE E
Sbjct: 106 HVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEE 165

Query: 62  PALQN-PLFGLPNVFCAPYLG 81
           P  ++ PL    NV   P++G
Sbjct: 166 PLPKDHPLTKFDNVVLTPHIG 186


>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
           dehydrogenase, D-lactate dehydrogenase, oxidoreductase;
           HET: NAD; 1.86A {Lactobacillus casei} (A:101-297)
          Length = 197

 Score = 73.8 bits (180), Expect = 1e-14
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 14/94 (14%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVP   +  +I+N+   +  K G  +IN AR  L+D  A+   L+SG +A  G D +E 
Sbjct: 103 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 162

Query: 61  EPALQ--------------NPLFGLPNVFCAPYL 80
           E                  + L G+PNV  +P++
Sbjct: 163 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHI 196


>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P)
           rossmann fold, formate/glycerate dehydrogenase
           substrate-binding domain, oxidoreductase; HET: NDP;
           2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297)
          Length = 190

 Score = 74.1 bits (181), Expect = 1e-14
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
              LT  T+ + NK+   K K     IN +RG +V+++ L + L SG +A AG DV   E
Sbjct: 110 ACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 169

Query: 62  PALQN-PLFGLPNVFCAPYLG 81
           P   N PL  L N    P++G
Sbjct: 170 PLPTNHPLLTLKNCVILPHIG 190


>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II,
           11143J, structural genomics, protein structure
           initiative; 2.20A {Thermoplasma acidophilum} (A:79-259)
          Length = 181

 Score = 72.9 bits (178), Expect = 3e-14
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
            +PLT+KT+  +N   L+  +  + I+N AR  +V +      L+         DV+  E
Sbjct: 102 AIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNE 161

Query: 62  PALQNPLFGLPNVFCAPYLGA 82
           P        L N   +P++  
Sbjct: 162 PE--ITETNLRNAILSPHVAG 180


>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm,
           NAD, structural genomics; HET: NDP NDB EPE; 2.14A
           {Salmonella enterica subsp} (A:96-280)
          Length = 185

 Score = 72.2 bits (176), Expect = 5e-14
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
             +P T +T  I+N E L +   G  ++N ARG  V E  L   L SG +  A  DVF  
Sbjct: 104 NLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQ 163

Query: 61  EPALQ-NPLFGLPNVFCAPYLG 81
           EP  Q +PL+  P V   P++ 
Sbjct: 164 EPLPQESPLWRHPRVAXTPHIA 185


>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family
           protein; structural genomics, protein structure
           initiative; 1.80A {Aeromonas salmonicida subsp}
           (A:98-281)
          Length = 184

 Score = 72.3 bits (176), Expect = 5e-14
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
            +P T +T ++         K G  + N  RG  ++E  L   L++G +  A  DVFE E
Sbjct: 104 VLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 163

Query: 62  PALQ-NPLFGLPNVFCAP 78
           P    +PL+G PN+   P
Sbjct: 164 PLPADSPLWGQPNLIITP 181


>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase;
           structural variant of the BAB rossmann fold,
           oxidoreductase; 1.98A {Acidaminococcus fermentans}
           (A:102-299)
          Length = 198

 Score = 71.9 bits (175), Expect = 5e-14
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           +H P   +   ++ ++ L K K G  ++NCARG LVD  A+ E ++SG +   G DV + 
Sbjct: 103 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 162

Query: 61  EPA---------------LQNPLFGLPNVFCAPYLG 81
           E +                +  +   P V   P+LG
Sbjct: 163 EASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLG 198


>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2,
           protein structure initiative; 2.20A {Lactobacillus
           plantarum} (A:92-281)
          Length = 190

 Score = 71.9 bits (175), Expect = 6e-14
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
            +PLT  T ++ + E   +TK    +IN  RG  VD  AL   L    ++ A  DV E E
Sbjct: 107 ALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPE 166

Query: 62  PALQN-PLFGLPNVFCAPYLGAS 83
           P   + PL+   +V   P++   
Sbjct: 167 PLPTDHPLWQRDDVLITPHISGQ 189


>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural
           genomics, riken structural genomics/proteomics
           initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus
           thermophilus HB8} (A:97-279)
          Length = 183

 Score = 70.7 bits (172), Expect = 1e-13
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LH PLT +T  +LN+E L   K G  ++N ARG LVD  AL E L+      AG DV + 
Sbjct: 103 LHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLF-GAGLDVTDP 161

Query: 61  EPALQN-PLFGLPNVFCAPYLG 81
           EP     PL+ LPN    P++G
Sbjct: 162 EPLPPGHPLYALPNAVITPHIG 183


>2o4c_A Erythronate-4-phosphate dehydrogenase;
           erythronate-4-phsphate, NAD, tartrate, phosphate ION,
           oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas
           aeruginosa} (A:91-257)
          Length = 167

 Score = 70.9 bits (173), Expect = 1e-13
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           L+    + T+++L++  L+  + G  ++N +RG +VD  AL  LL+ G   E   DV+E 
Sbjct: 87  LNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEG 146

Query: 61  EPALQNPLFGLPNVFCAPYLGA 82
           EP   +P      +   P++  
Sbjct: 147 EPQA-DPELAARCLIATPHIAG 167


>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
           oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
           2w2l_A* 2w2l_D* 2w2k_B (A:112-306)
          Length = 195

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 25/80 (31%), Positives = 43/80 (53%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
            VP    T +++++   +  K G  I+N ARG ++ ++AL   L+SG +  AG DV E E
Sbjct: 116 SVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 175

Query: 62  PALQNPLFGLPNVFCAPYLG 81
           P +   L  + +V    ++G
Sbjct: 176 PQVSKELIEMKHVTLTTHIG 195


>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy
           acid dehydrogenase, cofactor regenerator, yeast, CBFDH;
           HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
           (A:118-313)
          Length = 196

 Score = 70.4 bits (171), Expect = 2e-13
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           ++ PL   TK ++NKE LSK K G  ++N ARG +     +A  L+SG +   G DV+  
Sbjct: 110 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 169

Query: 61  EPALQN------PLFGLPNVFCAPYL 80
           +PA ++                 P+ 
Sbjct: 170 QPAPKDHPWRDMRNKYGAGNAMTPHY 195


>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
           phosphorylation, transcriptional corepressor,
           transcription repressor; HET: NAD; 1.95A {Homo sapiens}
           (A:117-311)
          Length = 195

 Score = 69.2 bits (168), Expect = 4e-13
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LH  L     +++N   + + + G  ++N ARGGLVDE ALA+ L+ G +  A  DV E 
Sbjct: 113 LHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 172

Query: 61  EPAL--QNPLFGLPNVFCAP 78
           EP    Q PL   PN+ C P
Sbjct: 173 EPFSFSQGPLKDAPNLICTP 192


>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
           sphaericus} (A:138-364)
          Length = 227

 Score = 68.8 bits (167), Expect = 6e-13
 Identities = 11/111 (9%), Positives = 31/111 (27%), Gaps = 11/111 (9%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
             +        +LN   + + K+ V   +     L D      L + G V    + +   
Sbjct: 94  CDIFAPCALGAVLNDFTIPQLKAKVIAGSA-DNQLKDPRHGKYLHELGIVYAPDYVINAG 152

Query: 61  EPAL----------QNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSD 101
                            +  +  ++ +     +  +     +   A +M++
Sbjct: 153 GVINVADELYGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVAADRMAE 203


>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
           reversible interconversion of pyruvate INTO D-lactate;
           1.90A {Lactobacillus delbrueckii subsp} (A:103-299)
          Length = 197

 Score = 68.4 bits (166), Expect = 7e-13
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVP      +++N E+++K K  V I+N +RG LVD +A+   L SG +     DV+E 
Sbjct: 103 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 162

Query: 61  EPALQ--------------NPLFGLPNVFCAP 78
           E  +                 L   PNV   P
Sbjct: 163 EVGIFNEDWEGKEFPDARLADLIARPNVLVTP 194


>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural
           genomics, SGC stockholm, structural genomics consortium,
           SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A
           {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A*
           1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A*
           (A:190-346)
          Length = 157

 Score = 67.9 bits (165), Expect = 9e-13
 Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 4/81 (4%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEV 60
               T    +I+  E+  + +    + N       +    L    +     +   D + +
Sbjct: 80  IFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTM 139

Query: 61  EPALQNPLFGLPNVFCAPYLG 81
                  L     +     LG
Sbjct: 140 ANGRHIILLAEGRL---VNLG 157


>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
           regulation phosphoglycerate dehydrogenase PGDH,
           oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
           (A:101-288)
          Length = 188

 Score = 67.3 bits (163), Expect = 2e-12
 Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVP    TKN    + +S  K G  +IN +RG +VD  ALA+ L S H+A A  DVF  
Sbjct: 103 LHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPT 162

Query: 61  EPALQ-----NPLFGLPNVFCAPYLG 81
           EPA       +PL    NV   P++G
Sbjct: 163 EPATNSDPFTSPLAEFDNVLLTPHIG 188


>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
           on protein structural and functional analyses; 1.95A
           {Pyrococcus horikoshii OT3} (A:95-286)
          Length = 192

 Score = 66.5 bits (161), Expect = 2e-12
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
            +PLT  T +I+N+E + K + G  ++N  RG LVDE A+ E ++ G +     DVFE E
Sbjct: 113 ALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKE 171

Query: 62  PALQ-NPLFGLPNVFCAP 78
           P  +             P
Sbjct: 172 PVREHELFKYEWETVLTP 189


>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           serine biosynthesis, structural genomics, PSI, protein
           structure initiative; HET: TAR; 2.30A {Mycobacterium
           tuberculosis} (A:323-452)
          Length = 130

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 125 VKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVR-VWRVGAN 183
           V P++ L   LG   G L  E    + +   G  A     VL  + L G+   V      
Sbjct: 2   VAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVIEDAVT 61

Query: 184 IISAPIIIKENAIILSTIKRDKSGV 208
            ++AP +  E  +     K  +S  
Sbjct: 62  FVNAPALAAERGVTAEICKASESPN 86


>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
           S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD,
           one-carbon metabolism; HET: NAD; 2.30A {Burkholderia
           pseudomallei 1710B} PDB: 3glq_A* (A:247-409)
          Length = 163

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 6/73 (8%), Positives = 19/73 (26%), Gaps = 1/73 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
                    +++N +++   +    + N        + A     Q  ++     D     
Sbjct: 89  IFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWENIK-PQVDHIIFP 147

Query: 62  PALQNPLFGLPNV 74
              +  L     +
Sbjct: 148 DGKRVILLAEGRL 160


>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex,
           hydrolase, NAD, one-carbon metabolism, phosphoprotein;
           HET: NAD; 2.25A {Homo sapiens} (A:200-354)
          Length = 155

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLV-DENALAELLQSGHVAEAGFDVFEV 60
            V      KN++ +E+L + K+   + N        D  +L     +     +  D    
Sbjct: 79  IVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIW 138

Query: 61  EPALQNPLFGLPNV 74
               +  L     +
Sbjct: 139 PDGKRIVLLAEGRL 152


>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of
           dimers, NAD binding domain, 37 amino acid insertional
           region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis
           H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* (A:253-410)
          Length = 158

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEV 60
            V      K+I+  E++   K    + N       +D   L     +    +   D++  
Sbjct: 80  IVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTF 139

Query: 61  EPALQ-NPLFGLPNVFCAPYLG 81
               +   +     +     LG
Sbjct: 140 GDTGRSIIVLSEGRL---LNLG 158


>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           serine biosynthesis, structural genomics, PSI, protein
           structure initiative; HET: TAR; 2.30A {Mycobacterium
           tuberculosis} (A:1-97,A:283-322)
          Length = 137

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 53  AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112
            G D  +V+ A      G+  V  AP   AST E+Q++    +A  +   L    V +A+
Sbjct: 75  VGLDNVDVDAATAR---GVL-VVNAP--TASTAEAQDRAGTDVAESVRLALAGEFVPDAV 128

Query: 113 NMAIISFEE 121
           N+      E
Sbjct: 129 NVGGGVVNE 137


>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
           oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
           PDB: 3ggg_D* 3ggp_A* (A:1-204)
          Length = 204

 Score = 58.8 bits (141), Expect = 5e-10
 Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 2/86 (2%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           + +    +T   + K+          + +           L  +L    V        E 
Sbjct: 98  VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEK 157

Query: 61  EPAL--QNPLFGLPNVFCAPYLGAST 84
                  + L+    V   P      
Sbjct: 158 SGVEYSLDNLYEGKKVILTPTKKTDK 183


>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET:
           NAD; 2.00A {Phormidium lapideum} (A:124-315)
          Length = 192

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAE-AGFDVFEV 60
            +    +   ++    + + ++G  I++ A         L     +    E  G   + V
Sbjct: 115 VLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGV 174

Query: 61  EP 62
             
Sbjct: 175 PN 176


>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD;
           1.90A {Aquifex aeolicus VF5} (A:1-172)
          Length = 172

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 2/95 (2%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           + +    +T   + K+          + +           L  +L    V        E 
Sbjct: 66  VXLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEK 125

Query: 61  EPAL--QNPLFGLPNVFCAPYLGASTVESQEKVAI 93
                  + L+    V   P         +    +
Sbjct: 126 SGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRV 160


>2eez_A Alanine dehydrogenase; TTHA0216, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 2.71A {Thermus thermophilus HB8}
           (A:123-315)
          Length = 193

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAE-AGFDVFEV 60
            +    K   ++ ++ LS  K G  I++ A         +     +       G   + V
Sbjct: 115 VLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGV 174

Query: 61  EP 62
             
Sbjct: 175 AN 176


>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET:
           NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A*
           2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* (A:125-318)
          Length = 194

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 6/80 (7%)

Query: 1   LHVPLTNK-TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFE 59
             V +       +++   ++  K G  +++ A                         +F 
Sbjct: 113 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFY 172

Query: 60  VEPALQ-----NPLFGLPNV 74
               +         + L N 
Sbjct: 173 CVANMPASVPKTSTYALTNA 192


>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase,
           oxidative deamination mechanism, oxidoreductase; HET:
           PHE NAD; 1.25A {Rhodococcus SP} (A:145-355)
          Length = 211

 Score = 51.8 bits (123), Expect = 6e-08
 Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 10/91 (10%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
            V        ++  E        V     A   + DE A   L   G +    F      
Sbjct: 89  DVFAPCAMGGVITTEVARTLDCSVVAGA-ANNVIADEAASDILHARGILYAPDFVANAGG 147

Query: 62  PALQNPLFGLPNVFCAPYLGASTVESQEKVA 92
                      ++     LG S     E+  
Sbjct: 148 A---------IHLVGREVLGWSESVVHERAV 169


>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine
           biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A
           {Aspergillus clavatus} PDB: 3k5h_A* (A:1-135)
          Length = 135

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54
               +T + +++ +   L +  S V I    +     +N   +     H+ + G
Sbjct: 86  TCDVVTAEIEHV-DTYALEEVASEVKIEPSWQAIRTIQNKFNQ---KEHLRKYG 135


>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A
           {Plasmodium falciparum 3D7} (A:227-394)
          Length = 168

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 13/87 (14%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
                    +++  E+L K K+   + N        +        +      G  +  V+
Sbjct: 89  FFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQ-------VNELFNYKGIHIENVK 141

Query: 62  PAL-QNPLFGLPNVFC-----APYLGA 82
           P + +  L     +          LG 
Sbjct: 142 PQVDRITLPNGNKIIVLARGRLLNLGC 168


>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
           regulation phosphoglycerate dehydrogenase PGDH,
           oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
           (A:1-100,A:289-321)
          Length = 133

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 13  LNKENLSKTKSGVCIINCARGGLVDENALAEL--LQSGHVAEAGFDVFEVEPALQNPLFG 70
           L+ E L ++      I       + E+ +     L +      G +  +++ A +    G
Sbjct: 36  LDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKR---G 92

Query: 71  LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113
           +P VF AP    ST E+QE + +++A ++  Y  +G   +A+N
Sbjct: 93  IP-VFNAP--FGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVN 132


>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
           structural genomics center for infectious disease,
           brucellosis; 2.15A {Brucella melitensis biovar abortus}
           (A:1-111,A:300-332)
          Length = 144

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 13  LNKENLSKTKSGVCIINCARGGLVDENALAEL--LQSGHVAEAGFDVFEVEPALQNPLFG 70
           L+K +L K  S   II       + E   A    L +      G +  E++ A +    G
Sbjct: 47  LDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKR---G 103

Query: 71  LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113
           +P VF AP    ST E+QE++  ++  ++ +Y   G    A+N
Sbjct: 104 IP-VFNAP--FGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVN 143


>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics,
           joint center for structural genomics, JCSG, protein
           structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia
           SP} (A:1-195)
          Length = 195

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 6/130 (4%), Positives = 35/130 (26%), Gaps = 5/130 (3%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           + + L +     + ++ + + + G  ++                  +  +          
Sbjct: 71  VVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVXPERADITYFIGHPCHPPLFN 130

Query: 61  EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120
           +                  +  +  +  E+    +       + +   S       ++ E
Sbjct: 131 DETDPAARTDYHGGIAKQAIVCALXQGPEE-HYAIGAD----ICETXWSPVTRTHRVTTE 185

Query: 121 EAPLVKPFMT 130
           +  +++P ++
Sbjct: 186 QLAILEPGLS 195


>3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC,
           tyrosine biosynthesis, EC:1.3.12.-, structural genomics;
           2.46A {Streptococcus thermophilus lmg 18311}
           (A:1-179,A:292-317)
          Length = 205

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 6/103 (5%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           L VP+      +    +L    + +     +    + E A   L                
Sbjct: 71  LAVPIKQTXAYLKELADLDLKDNVIITDAGSTKREIVEAAERYLTGKNVQFVGSHPXAGS 130

Query: 61  EPA----LQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQM 99
             +        LF        P          E     +   +
Sbjct: 131 HKSGAIAADVTLFENAYYIFTPTSLTKETTIPE--LKDILSGL 171


>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           phosphoglycerate dehydrogenase deficiency, serine
           metabolism; HET: NAD; 1.70A {Homo sapiens}
           (A:1-120,A:306-335)
          Length = 150

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 53  AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVV 108
            G D  ++E A +    G+  V   P   AST E+Q +   ++A Q  D +    +
Sbjct: 98  TGVDNVDLEAATRK---GIL-VMNTP--NASTKEAQSRCGEEIAVQFVDMVKGKSL 147


>3ktd_A Prephenate dehydrogenase; structural genomics, joint center
           for structural genomics, JCSG, protein structure
           initiative; 2.60A {Corynebacterium glutamicum atcc
           13032} (A:1-186,A:304-341)
          Length = 224

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 9/126 (7%), Positives = 26/126 (20%), Gaps = 1/126 (0%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
                    ++L+  +     +G   +   +  + D             +          
Sbjct: 74  LAVPXTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYDAVKARNXQHRYVGSHPXAGTANSG 133

Query: 62  P-ALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120
             A  + LF                +            +   L  G       ++     
Sbjct: 134 WSASXDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQXALAVGAEVVPSRVSPTITS 193

Query: 121 EAPLVK 126
             P+++
Sbjct: 194 SRPVLR 199


>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7;
           2.5A {Homo sapiens} (A:1-193)
          Length = 193

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 3/98 (3%), Positives = 12/98 (12%), Gaps = 7/98 (7%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
             V      K+++   +                 +  +                 +    
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151

Query: 61  EPALQNPLFGLPNVFCAPYLGAS--TVESQEKVAIQLA 96
                       +              E        + 
Sbjct: 152 G-----NQQLSNDGMLVILAAGDRGLYEDCSSCFQAMG 184


>2rir_A Dipicolinate synthase, A chain; structural genomics,
           APC1343, PSI-2, protein structure initiative, midwest
           center for structural genomics; HET: MSE NAP; 2.79A
           {Bacillus subtilis} (A:128-271)
          Length = 144

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 10/46 (21%), Positives = 15/46 (32%)

Query: 9   TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54
              ILN+  LS       I++ A      +   AE      +   G
Sbjct: 97  PSXILNQTVLSSXTPKTLILDLASRPGGTDFKYAEKQGIKALLAPG 142


>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY
           crystallography structure, oxidoreductase; HET: OMT NAP;
           1.55A {Synechocystis SP} (A:1-166)
          Length = 166

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 5/85 (5%), Positives = 16/85 (18%), Gaps = 1/85 (1%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           + +    +      ++ +        + + A          ++L                
Sbjct: 61  IFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPXAGTAAQ 120

Query: 61  EP-ALQNPLFGLPNVFCAPYLGAST 84
                +  LF        P      
Sbjct: 121 GIDGAEENLFVNAPYVLTPTEYTDP 145


>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural
           genomics, joint center for structural genomics, JCSG,
           protein structure initiative; HET: MSE TAR; 2.10A
           {Bacillus halodurans} (A:126-269)
          Length = 144

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 8/52 (15%), Positives = 17/52 (32%)

Query: 3   VPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54
           V +      ++    L++  S   +I+ A      +   AE      +   G
Sbjct: 91  VCINTIPALVVTANVLAEXPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPG 142


>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
           C-terminal alpha-helical domain, oxidoreductase; 2.00A
           {Pseudomonas aeruginosa} (A:1-182)
          Length = 182

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 12/94 (12%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           +  P       +  +E     K G  +     G  +  N +        V  A  DV  +
Sbjct: 78  ILTPDE-FQGRLYKEEIEPNLKKGATLAFA-HGFSIHYNQV--------VPRADLDVIMI 127

Query: 61  EPALQNPLF--GLPNVFCAPYLGASTVESQEKVA 92
            P                 P L A   ++     
Sbjct: 128 APKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAK 161


>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
           catabolism, NADP+, structural genomics; HET: NDP; 1.80A
           {Thermus thermophilus HB8} (A:1-157)
          Length = 157

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
            +P T +   +         + G   ++   G       LAE L+   V      V    
Sbjct: 62  CLPTTREVYEVAEAL-YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGT 120

Query: 62  PALQNPLFGL 71
              +     +
Sbjct: 121 SGAEAGTLTV 130


>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
           oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
           aeolicus} PDB: 2hk8_A 2hk7_A (A:127-241)
          Length = 115

 Score = 27.6 bits (61), Expect = 1.4
 Identities = 4/44 (9%), Positives = 10/44 (22%), Gaps = 1/44 (2%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAEL 44
               +  K ++     N    K    +++             E 
Sbjct: 66  NTTSVGLKDEDPEI-FNYDLIKKDHVVVDIIYKETKLLKKAKEK 108


>1wwk_A Phosphoglycerate dehydrogenase; riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
           horikoshii OT3} (A:1-97,A:284-307)
          Length = 121

 Score = 26.8 bits (59), Expect = 2.1
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 53  AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103
            G D  +VE A +    G+  V  AP   ASTVE+QE+  +++A ++   L
Sbjct: 75  VGLDNIDVEAAKEK---GIE-VVNAP--AASTVEAQERAGVEVAEKVVKIL 119


>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
           monooxygenase; 1.70A {Methylococcus capsulatus str}
           (D:1-248)
          Length = 248

 Score = 25.6 bits (56), Expect = 4.7
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 111 ALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQE 149
            L +   +    PL+      A   G  I   +  SI+ 
Sbjct: 189 NLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIET 227


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,419,207
Number of extensions: 57654
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 59
Length of query: 208
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 123
Effective length of database: 2,082,624
Effective search space: 256162752
Effective search space used: 256162752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)