RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.34_1 (208 letters) >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:98-282) Length = 185 Score = 86.1 bits (212), Expect = 3e-18 Identities = 43/81 (53%), Positives = 55/81 (67%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +H+P T +T +++KE L+KTK GV I+N ARGGLVDE ALA+ + GHV AG DVF Sbjct: 105 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT 164 Query: 61 EPALQNPLFGLPNVFCAPYLG 81 EP +PLF L V P+LG Sbjct: 165 EPCTDSPLFELAQVVVTPHLG 185 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288) Length = 190 Score = 81.8 bits (201), Expect = 6e-17 Identities = 30/80 (37%), Positives = 44/80 (55%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 + P T +T+ NK + G ++N ARG LVD + L++G +A AGFDVF E Sbjct: 111 NAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 170 Query: 62 PALQNPLFGLPNVFCAPYLG 81 P + + LPN F P++G Sbjct: 171 PNINEGYYDLPNTFLFPHIG 190 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290) Length = 192 Score = 81.4 bits (200), Expect = 8e-17 Identities = 38/81 (46%), Positives = 50/81 (61%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L VPLT +T +++N+E L K +IN ARG +VD NAL + L+ G +A AG DVFE Sbjct: 112 LAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 171 Query: 61 EPALQNPLFGLPNVFCAPYLG 81 EP LF L NV P++G Sbjct: 172 EPYYNEELFKLDNVVLTPHIG 192 >2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} (A:) Length = 334 Score = 81.3 bits (199), Expect = 9e-17 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 16/131 (12%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP T +T + +N+E +S K GV +IN ARG +VD +AL Q G + G DVFE Sbjct: 200 LHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFED 259 Query: 61 EPAL----------------QNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLI 104 E L L NV P++ T +S E++ + + ++ Sbjct: 260 EEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVK 319 Query: 105 DGVVSNALNMA 115 + N Sbjct: 320 GDLEQIKGNFV 330 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:100-285) Length = 186 Score = 79.5 bits (195), Expect = 3e-16 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 HV ++ K I++ K V I+N +R V+ AL + ++ G V DVF E Sbjct: 104 HVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNE 163 Query: 62 PALQN---PLFGLPNVFCAPYLG 81 P + L V ++G Sbjct: 164 PPKEEWELELLKHERVIVTTHIG 186 >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} (A:108-302) Length = 195 Score = 78.0 bits (191), Expect = 9e-16 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 H+ L ++T++I+ +L++ K +N +R LV+EN + L G A DVFE E Sbjct: 115 HLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETE 174 Query: 62 PALQ-NPLFGLPNVFCAPYLG 81 P LQ + L + N C P++G Sbjct: 175 PILQGHTLLRMENCICTPHIG 195 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:121-305) Length = 185 Score = 77.3 bits (189), Expect = 1e-15 Identities = 37/80 (46%), Positives = 44/80 (55%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 H PL T +LN ++ K GV ++NCARGG+VDE AL LQSG A A DVF E Sbjct: 106 HTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE 165 Query: 62 PALQNPLFGLPNVFCAPYLG 81 P L NV P+LG Sbjct: 166 PPRDRALVDHENVISCPHLG 185 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:145-334) Length = 190 Score = 77.2 bits (189), Expect = 1e-15 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L+ PL +T++++N E L K G I+N ARG L D +A+A L+SG +A DV+ Sbjct: 109 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 168 Query: 61 EPALQ-NPLFGLPNVFCAPYLG 81 +PA + +P +P P++ Sbjct: 169 QPAPKDHPWRTMPYNGMTPHIS 190 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} (A:81-263) Length = 183 Score = 76.8 bits (188), Expect = 2e-15 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +PL T+ ++ ++L+ +N R ++D + + +L+ DV+ Sbjct: 100 CALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG 159 Query: 61 EPAL--QNPLFGLPNVFCAPYLGA 82 F LPNV P++ Sbjct: 160 RNDFAKDAEFFSLPNVVATPWVAG 183 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:112-299) Length = 188 Score = 76.5 bits (187), Expect = 2e-15 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 5/86 (5%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP + T ++ + L K K G +IN ARG VD ALA++LQ GH+A A DVF V Sbjct: 103 LHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPV 162 Query: 61 EPA-----LQNPLFGLPNVFCAPYLG 81 EPA PL GL NV P++G Sbjct: 163 EPASNGERFSTPLQGLENVILTPHIG 188 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:119-301) Length = 183 Score = 75.7 bits (185), Expect = 4e-15 Identities = 33/81 (40%), Positives = 44/81 (54%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + PLT +T +I+N+E + +IN RG VDE L L G + AG DVFE Sbjct: 103 VACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFER 162 Query: 61 EPALQNPLFGLPNVFCAPYLG 81 EP + LFGL NV P++G Sbjct: 163 EPEVPEKLFGLENVVLLPHVG 183 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:98-283) Length = 186 Score = 74.2 bits (181), Expect = 1e-14 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 HVPL T +++N+E L K +IN +RG +VD NAL + L+ G +A AG DVFE E Sbjct: 106 HVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEE 165 Query: 62 PALQN-PLFGLPNVFCAPYLG 81 P ++ PL NV P++G Sbjct: 166 PLPKDHPLTKFDNVVLTPHIG 186 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:101-297) Length = 197 Score = 73.8 bits (180), Expect = 1e-14 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 14/94 (14%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP + +I+N+ + K G +IN AR L+D A+ L+SG +A G D +E Sbjct: 103 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 162 Query: 61 EPALQ--------------NPLFGLPNVFCAPYL 80 E + L G+PNV +P++ Sbjct: 163 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHI 196 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297) Length = 190 Score = 74.1 bits (181), Expect = 1e-14 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 LT T+ + NK+ K K IN +RG +V+++ L + L SG +A AG DV E Sbjct: 110 ACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 169 Query: 62 PALQN-PLFGLPNVFCAPYLG 81 P N PL L N P++G Sbjct: 170 PLPTNHPLLTLKNCVILPHIG 190 >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} (A:79-259) Length = 181 Score = 72.9 bits (178), Expect = 3e-14 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +PLT+KT+ +N L+ + + I+N AR +V + L+ DV+ E Sbjct: 102 AIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNE 161 Query: 62 PALQNPLFGLPNVFCAPYLGA 82 P L N +P++ Sbjct: 162 PE--ITETNLRNAILSPHVAG 180 >3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} (A:96-280) Length = 185 Score = 72.2 bits (176), Expect = 5e-14 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +P T +T I+N E L + G ++N ARG V E L L SG + A DVF Sbjct: 104 NLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQ 163 Query: 61 EPALQ-NPLFGLPNVFCAPYLG 81 EP Q +PL+ P V P++ Sbjct: 164 EPLPQESPLWRHPRVAXTPHIA 185 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} (A:98-281) Length = 184 Score = 72.3 bits (176), Expect = 5e-14 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +P T +T ++ K G + N RG ++E L L++G + A DVFE E Sbjct: 104 VLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 163 Query: 62 PALQ-NPLFGLPNVFCAP 78 P +PL+G PN+ P Sbjct: 164 PLPADSPLWGQPNLIITP 181 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} (A:102-299) Length = 198 Score = 71.9 bits (175), Expect = 5e-14 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 15/96 (15%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +H P + ++ ++ L K K G ++NCARG LVD A+ E ++SG + G DV + Sbjct: 103 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 162 Query: 61 EPA---------------LQNPLFGLPNVFCAPYLG 81 E + + + P V P+LG Sbjct: 163 EASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLG 198 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:92-281) Length = 190 Score = 71.9 bits (175), Expect = 6e-14 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +PLT T ++ + E +TK +IN RG VD AL L ++ A DV E E Sbjct: 107 ALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPE 166 Query: 62 PALQN-PLFGLPNVFCAPYLGAS 83 P + PL+ +V P++ Sbjct: 167 PLPTDHPLWQRDDVLITPHISGQ 189 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:97-279) Length = 183 Score = 70.7 bits (172), Expect = 1e-13 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH PLT +T +LN+E L K G ++N ARG LVD AL E L+ AG DV + Sbjct: 103 LHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLF-GAGLDVTDP 161 Query: 61 EPALQN-PLFGLPNVFCAPYLG 81 EP PL+ LPN P++G Sbjct: 162 EPLPPGHPLYALPNAVITPHIG 183 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:91-257) Length = 167 Score = 70.9 bits (173), Expect = 1e-13 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L+ + T+++L++ L+ + G ++N +RG +VD AL LL+ G E DV+E Sbjct: 87 LNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEG 146 Query: 61 EPALQNPLFGLPNVFCAPYLGA 82 EP +P + P++ Sbjct: 147 EPQA-DPELAARCLIATPHIAG 167 >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B (A:112-306) Length = 195 Score = 70.8 bits (172), Expect = 1e-13 Identities = 25/80 (31%), Positives = 43/80 (53%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 VP T +++++ + K G I+N ARG ++ ++AL L+SG + AG DV E E Sbjct: 116 SVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 175 Query: 62 PALQNPLFGLPNVFCAPYLG 81 P + L + +V ++G Sbjct: 176 PQVSKELIEMKHVTLTTHIG 195 >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:118-313) Length = 196 Score = 70.4 bits (171), Expect = 2e-13 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 ++ PL TK ++NKE LSK K G ++N ARG + +A L+SG + G DV+ Sbjct: 110 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 169 Query: 61 EPALQN------PLFGLPNVFCAPYL 80 +PA ++ P+ Sbjct: 170 QPAPKDHPWRDMRNKYGAGNAMTPHY 195 >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:117-311) Length = 195 Score = 69.2 bits (168), Expect = 4e-13 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH L +++N + + + G ++N ARGGLVDE ALA+ L+ G + A DV E Sbjct: 113 LHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 172 Query: 61 EPAL--QNPLFGLPNVFCAP 78 EP Q PL PN+ C P Sbjct: 173 EPFSFSQGPLKDAPNLICTP 192 >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} (A:138-364) Length = 227 Score = 68.8 bits (167), Expect = 6e-13 Identities = 11/111 (9%), Positives = 31/111 (27%), Gaps = 11/111 (9%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + +LN + + K+ V + L D L + G V + + Sbjct: 94 CDIFAPCALGAVLNDFTIPQLKAKVIAGSA-DNQLKDPRHGKYLHELGIVYAPDYVINAG 152 Query: 61 EPAL----------QNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSD 101 + + ++ + + + + A +M++ Sbjct: 153 GVINVADELYGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVAADRMAE 203 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:103-299) Length = 197 Score = 68.4 bits (166), Expect = 7e-13 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP +++N E+++K K V I+N +RG LVD +A+ L SG + DV+E Sbjct: 103 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 162 Query: 61 EPALQ--------------NPLFGLPNVFCAP 78 E + L PNV P Sbjct: 163 EVGIFNEDWEGKEFPDARLADLIARPNVLVTP 194 >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, structural genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A* (A:190-346) Length = 157 Score = 67.9 bits (165), Expect = 9e-13 Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 4/81 (4%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEV 60 T +I+ E+ + + + N + L + + D + + Sbjct: 80 IFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTM 139 Query: 61 EPALQNPLFGLPNVFCAPYLG 81 L + LG Sbjct: 140 ANGRHIILLAEGRL---VNLG 157 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:101-288) Length = 188 Score = 67.3 bits (163), Expect = 2e-12 Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP TKN + +S K G +IN +RG +VD ALA+ L S H+A A DVF Sbjct: 103 LHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPT 162 Query: 61 EPALQ-----NPLFGLPNVFCAPYLG 81 EPA +PL NV P++G Sbjct: 163 EPATNSDPFTSPLAEFDNVLLTPHIG 188 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} (A:95-286) Length = 192 Score = 66.5 bits (161), Expect = 2e-12 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +PLT T +I+N+E + K + G ++N RG LVDE A+ E ++ G + DVFE E Sbjct: 113 ALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKE 171 Query: 62 PALQ-NPLFGLPNVFCAP 78 P + P Sbjct: 172 PVREHELFKYEWETVLTP 189 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:323-452) Length = 130 Score = 65.9 bits (161), Expect = 3e-12 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 125 VKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVR-VWRVGAN 183 V P++ L LG G L E + + G A VL + L G+ V Sbjct: 2 VAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVIEDAVT 61 Query: 184 IISAPIIIKENAIILSTIKRDKSGV 208 ++AP + E + K +S Sbjct: 62 FVNAPALAAERGVTAEICKASESPN 86 >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* (A:247-409) Length = 163 Score = 65.6 bits (159), Expect = 4e-12 Identities = 6/73 (8%), Positives = 19/73 (26%), Gaps = 1/73 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +++N +++ + + N + A Q ++ D Sbjct: 89 IFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWENIK-PQVDHIIFP 147 Query: 62 PALQNPLFGLPNV 74 + L + Sbjct: 148 DGKRVILLAEGRL 160 >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} (A:200-354) Length = 155 Score = 64.5 bits (156), Expect = 1e-11 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLV-DENALAELLQSGHVAEAGFDVFEV 60 V KN++ +E+L + K+ + N D +L + + D Sbjct: 79 IVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIW 138 Query: 61 EPALQNPLFGLPNV 74 + L + Sbjct: 139 PDGKRIVLLAEGRL 152 >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding domain, 37 amino acid insertional region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* (A:253-410) Length = 158 Score = 59.8 bits (144), Expect = 2e-10 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEV 60 V K+I+ E++ K + N +D L + + D++ Sbjct: 80 IVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTF 139 Query: 61 EPALQ-NPLFGLPNVFCAPYLG 81 + + + LG Sbjct: 140 GDTGRSIIVLSEGRL---LNLG 158 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:1-97,A:283-322) Length = 137 Score = 58.7 bits (142), Expect = 5e-10 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 53 AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 G D +V+ A G+ V AP AST E+Q++ +A + L V +A+ Sbjct: 75 VGLDNVDVDAATAR---GVL-VVNAP--TASTAEAQDRAGTDVAESVRLALAGEFVPDAV 128 Query: 113 NMAIISFEE 121 N+ E Sbjct: 129 NVGGGVVNE 137 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* (A:1-204) Length = 204 Score = 58.8 bits (141), Expect = 5e-10 Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 2/86 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + + +T + K+ + + L +L V E Sbjct: 98 VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEK 157 Query: 61 EPAL--QNPLFGLPNVFCAPYLGAST 84 + L+ V P Sbjct: 158 SGVEYSLDNLYEGKKVILTPTKKTDK 183 >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:124-315) Length = 192 Score = 57.9 bits (139), Expect = 1e-09 Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 1/62 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAE-AGFDVFEV 60 + + ++ + + ++G I++ A L + E G + V Sbjct: 115 VLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGV 174 Query: 61 EP 62 Sbjct: 175 PN 176 >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus VF5} (A:1-172) Length = 172 Score = 57.3 bits (137), Expect = 2e-09 Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 2/95 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + + +T + K+ + + L +L V E Sbjct: 66 VXLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEK 125 Query: 61 EPAL--QNPLFGLPNVFCAPYLGASTVESQEKVAI 93 + L+ V P + + Sbjct: 126 SGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRV 160 >2eez_A Alanine dehydrogenase; TTHA0216, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.71A {Thermus thermophilus HB8} (A:123-315) Length = 193 Score = 56.8 bits (136), Expect = 2e-09 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 1/62 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAE-AGFDVFEV 60 + K ++ ++ LS K G I++ A + + G + V Sbjct: 115 VLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGV 174 Query: 61 EP 62 Sbjct: 175 AN 176 >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* (A:125-318) Length = 194 Score = 55.6 bits (133), Expect = 4e-09 Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 6/80 (7%) Query: 1 LHVPLTNK-TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFE 59 V + +++ ++ K G +++ A +F Sbjct: 113 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFY 172 Query: 60 VEPALQ-----NPLFGLPNV 74 + + L N Sbjct: 173 CVANMPASVPKTSTYALTNA 192 >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} (A:145-355) Length = 211 Score = 51.8 bits (123), Expect = 6e-08 Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 10/91 (10%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 V ++ E V A + DE A L G + F Sbjct: 89 DVFAPCAMGGVITTEVARTLDCSVVAGA-ANNVIADEAASDILHARGILYAPDFVANAGG 147 Query: 62 PALQNPLFGLPNVFCAPYLGASTVESQEKVA 92 ++ LG S E+ Sbjct: 148 A---------IHLVGREVLGWSESVVHERAV 169 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* (A:1-135) Length = 135 Score = 51.2 bits (122), Expect = 1e-07 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54 +T + +++ + L + S V I + +N + H+ + G Sbjct: 86 TCDVVTAEIEHV-DTYALEEVASEVKIEPSWQAIRTIQNKFNQ---KEHLRKYG 135 >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum 3D7} (A:227-394) Length = 168 Score = 50.7 bits (120), Expect = 1e-07 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 13/87 (14%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +++ E+L K K+ + N + + G + V+ Sbjct: 89 FFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQ-------VNELFNYKGIHIENVK 141 Query: 62 PAL-QNPLFGLPNVFC-----APYLGA 82 P + + L + LG Sbjct: 142 PQVDRITLPNGNKIIVLARGRLLNLGC 168 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:1-100,A:289-321) Length = 133 Score = 50.2 bits (120), Expect = 2e-07 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 13 LNKENLSKTKSGVCIINCARGGLVDENALAEL--LQSGHVAEAGFDVFEVEPALQNPLFG 70 L+ E L ++ I + E+ + L + G + +++ A + G Sbjct: 36 LDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKR---G 92 Query: 71 LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 +P VF AP ST E+QE + +++A ++ Y +G +A+N Sbjct: 93 IP-VFNAP--FGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVN 132 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:1-111,A:300-332) Length = 144 Score = 49.5 bits (118), Expect = 4e-07 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 13 LNKENLSKTKSGVCIINCARGGLVDENALAEL--LQSGHVAEAGFDVFEVEPALQNPLFG 70 L+K +L K S II + E A L + G + E++ A + G Sbjct: 47 LDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKR---G 103 Query: 71 LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 +P VF AP ST E+QE++ ++ ++ +Y G A+N Sbjct: 104 IP-VFNAP--FGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVN 143 >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia SP} (A:1-195) Length = 195 Score = 48.8 bits (115), Expect = 5e-07 Identities = 6/130 (4%), Positives = 35/130 (26%), Gaps = 5/130 (3%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + + L + + ++ + + + G ++ + + Sbjct: 71 VVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVXPERADITYFIGHPCHPPLFN 130 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120 + + + + E+ + + + S ++ E Sbjct: 131 DETDPAARTDYHGGIAKQAIVCALXQGPEE-HYAIGAD----ICETXWSPVTRTHRVTTE 185 Query: 121 EAPLVKPFMT 130 + +++P ++ Sbjct: 186 QLAILEPGLS 195 >3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311} (A:1-179,A:292-317) Length = 205 Score = 47.4 bits (111), Expect = 1e-06 Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 6/103 (5%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L VP+ + +L + + + + E A L Sbjct: 71 LAVPIKQTXAYLKELADLDLKDNVIITDAGSTKREIVEAAERYLTGKNVQFVGSHPXAGS 130 Query: 61 EPA----LQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQM 99 + LF P E + + Sbjct: 131 HKSGAIAADVTLFENAYYIFTPTSLTKETTIPE--LKDILSGL 171 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:1-120,A:306-335) Length = 150 Score = 47.3 bits (112), Expect = 2e-06 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 53 AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVV 108 G D ++E A + G+ V P AST E+Q + ++A Q D + + Sbjct: 98 TGVDNVDLEAATRK---GIL-VMNTP--NASTKEAQSRCGEEIAVQFVDMVKGKSL 147 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} (A:1-186,A:304-341) Length = 224 Score = 46.1 bits (108), Expect = 4e-06 Identities = 9/126 (7%), Positives = 26/126 (20%), Gaps = 1/126 (0%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 ++L+ + +G + + + D + Sbjct: 74 LAVPXTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYDAVKARNXQHRYVGSHPXAGTANSG 133 Query: 62 P-ALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120 A + LF + + L G ++ Sbjct: 134 WSASXDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQXALAVGAEVVPSRVSPTITS 193 Query: 121 EAPLVK 126 P+++ Sbjct: 194 SRPVLR 199 >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} (A:1-193) Length = 193 Score = 45.7 bits (107), Expect = 4e-06 Identities = 3/98 (3%), Positives = 12/98 (12%), Gaps = 7/98 (7%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 V K+++ + + + + Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151 Query: 61 EPALQNPLFGLPNVFCAPYLGAS--TVESQEKVAIQLA 96 + E + Sbjct: 152 G-----NQQLSNDGMLVILAAGDRGLYEDCSSCFQAMG 184 >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} (A:128-271) Length = 144 Score = 45.4 bits (107), Expect = 6e-06 Identities = 10/46 (21%), Positives = 15/46 (32%) Query: 9 TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54 ILN+ LS I++ A + AE + G Sbjct: 97 PSXILNQTVLSSXTPKTLILDLASRPGGTDFKYAEKQGIKALLAPG 142 >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} (A:1-166) Length = 166 Score = 44.1 bits (103), Expect = 1e-05 Identities = 5/85 (5%), Positives = 16/85 (18%), Gaps = 1/85 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + + + ++ + + + A ++L Sbjct: 61 IFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPXAGTAAQ 120 Query: 61 EP-ALQNPLFGLPNVFCAPYLGAST 84 + LF P Sbjct: 121 GIDGAEENLFVNAPYVLTPTEYTDP 145 >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:126-269) Length = 144 Score = 43.9 bits (103), Expect = 1e-05 Identities = 8/52 (15%), Positives = 17/52 (32%) Query: 3 VPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAG 54 V + ++ L++ S +I+ A + AE + G Sbjct: 91 VCINTIPALVVTANVLAEXPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPG 142 >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain, oxidoreductase; 2.00A {Pseudomonas aeruginosa} (A:1-182) Length = 182 Score = 41.8 bits (97), Expect = 6e-05 Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 12/94 (12%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + P + +E K G + G + N + V A DV + Sbjct: 78 ILTPDE-FQGRLYKEEIEPNLKKGATLAFA-HGFSIHYNQV--------VPRADLDVIMI 127 Query: 61 EPALQNPLF--GLPNVFCAPYLGASTVESQEKVA 92 P P L A ++ Sbjct: 128 APKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAK 161 >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural genomics; HET: NDP; 1.80A {Thermus thermophilus HB8} (A:1-157) Length = 157 Score = 36.0 bits (82), Expect = 0.004 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 1/70 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +P T + + + G ++ G LAE L+ V V Sbjct: 62 CLPTTREVYEVAEAL-YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGT 120 Query: 62 PALQNPLFGL 71 + + Sbjct: 121 SGAEAGTLTV 130 >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A (A:127-241) Length = 115 Score = 27.6 bits (61), Expect = 1.4 Identities = 4/44 (9%), Positives = 10/44 (22%), Gaps = 1/44 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAEL 44 + K ++ N K +++ E Sbjct: 66 NTTSVGLKDEDPEI-FNYDLIKKDHVVVDIIYKETKLLKKAKEK 108 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:1-97,A:284-307) Length = 121 Score = 26.8 bits (59), Expect = 2.1 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Query: 53 AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103 G D +VE A + G+ V AP ASTVE+QE+ +++A ++ L Sbjct: 75 VGLDNIDVEAAKEK---GIE-VVNAP--AASTVEAQERAGVEVAEKVVKIL 119 >1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:1-248) Length = 248 Score = 25.6 bits (56), Expect = 4.7 Identities = 8/39 (20%), Positives = 13/39 (33%) Query: 111 ALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQE 149 L + + PL+ A G I + SI+ Sbjct: 189 NLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIET 227 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0439 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,419,207 Number of extensions: 57654 Number of successful extensions: 196 Number of sequences better than 10.0: 1 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 59 Length of query: 208 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 123 Effective length of database: 2,082,624 Effective search space: 256162752 Effective search space used: 256162752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.5 bits)