RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.34_1 (208 letters) >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 Score = 118 bits (297), Expect = 8e-28 Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 3/208 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +H+P T +T +++KE L+KTK GV I+N ARGGLVDE ALA+ + GHV AG DVF Sbjct: 202 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT 261 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120 EP +PLF L V P+LGAST E+Q++ +A + L V +A+N+ Sbjct: 262 EPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVN 321 Query: 121 EAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVW-R 179 E P++ L LG G L E + + G A VL + L G+ Sbjct: 322 EEV--APWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVIE 379 Query: 180 VGANIISAPIIIKENAIILSTIKRDKSG 207 ++AP + E + K +S Sbjct: 380 DAVTFVNAPALAAERGVTAEICKASESP 407 >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 Score = 114 bits (286), Expect = 2e-26 Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +++PLT KT+ + NKE + K K GV I+N ARG +++ A+ + ++SGH+ DV++ Sbjct: 226 INMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDP 285 Query: 61 EPALQ-NPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103 +PA + +P +PN P+ +T+++Q + A + Y Sbjct: 286 QPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 329 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Length = 307 Score = 109 bits (274), Expect = 3e-25 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +HVPL T +++N+E L K +IN +RG +VD NAL + L+ G +A AG DVFE Sbjct: 202 IHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEE 261 Query: 61 EPALQ-NPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103 EP + +PL NV P++GASTVE+QE+ +++A ++ L Sbjct: 262 EPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKIL 305 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 Score = 109 bits (274), Expect = 4e-25 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP + +I+N+ + K G +IN AR L+D A+ L+SG +A G D +E Sbjct: 203 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 262 Query: 61 EPA--------------LQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDG 106 E L + L G+PNV +P++ T + + + D+L G Sbjct: 263 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKG 322 Query: 107 VVSNALNM 114 S + Sbjct: 323 ETSTEVTG 330 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 Score = 107 bits (268), Expect = 2e-24 Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP + T ++ + L K K G +IN ARG VD ALA++LQ GH+A A DVF V Sbjct: 214 LHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPV 273 Query: 61 EPA-----LQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMA 115 EPA PL GL NV P++G ST E+QE++ ++ ++ +Y G A+N Sbjct: 274 EPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFP 333 Query: 116 IISFEEAPLVKPFMTLADHLGCFIGQL 142 + P FM + ++ + L Sbjct: 334 QVQLPPRPTGTRFMHVHENRPGILNSL 360 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 Score = 105 bits (263), Expect = 7e-24 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 5/127 (3%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L VPLT +T +++N+E L K +IN ARG +VD NAL + L+ G +A AG DVFE Sbjct: 210 LAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120 EP LF L NV P++G+++ ++E +A +A + + + +N E Sbjct: 270 EPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPTLVN-----RE 324 Query: 121 EAPLVKP 127 + KP Sbjct: 325 VIKIRKP 331 >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 Score = 103 bits (258), Expect = 3e-23 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 2 HVPLT----NKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDV 57 H PL KT ++ ++ + + K G +IN RG +VD AL L +G DV Sbjct: 177 HTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDV 236 Query: 58 FEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103 +E EP L L ++ ++ T+E + + Q+ S ++ Sbjct: 237 WEGEPDLNVALLEAVDIGT-SHIAGYTLEGKARGTTQVFEAYSAFI 281 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} Length = 311 Score = 97.3 bits (241), Expect = 2e-21 Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 2/112 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH PLT +T +LN+E L K G ++N ARG LVD AL E L+ GH+ AG DV + Sbjct: 199 LHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDP 257 Query: 61 EPALQN-PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNA 111 EP PL+ LPN P++G++ ++E++A + L N Sbjct: 258 EPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNP 309 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* Length = 393 Score = 95.7 bits (237), Expect = 7e-21 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L+ PL +T++++N E L K G I+N ARG L D +A+A L+SG +A DV+ Sbjct: 253 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 312 Query: 61 EPALQ-NPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103 +PA + +P +P P++ +T+ +Q + A + + Sbjct: 313 QPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFF 356 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} Length = 335 Score = 95.3 bits (236), Expect = 1e-20 Identities = 45/110 (40%), Positives = 60/110 (54%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +H PL T +LN ++ K GV ++NCARGG+VDE AL LQSG A A DVF Sbjct: 225 VHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTE 284 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSN 110 EP L NV P+LGAST E+Q + ++A Q D + ++ Sbjct: 285 EPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG 334 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 Score = 94.5 bits (234), Expect = 2e-20 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 14/128 (10%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP +++N E+++K K V I+N +RG LVD +A+ L SG + DV+E Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264 Query: 61 EPALQN--------------PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDG 106 E + N L PNV P T + + ++ + + Sbjct: 265 EVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGK 324 Query: 107 VVSNALNM 114 + + Sbjct: 325 EAETPVKV 332 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A Length = 330 Score = 94.0 bits (232), Expect = 2e-20 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + LT T+ + NK+ K K IN +RG +V+++ L + L SG +A AG DV Sbjct: 216 VACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSP 275 Query: 61 EPALQN-PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 EP N PL L N P++G++T ++ +++ A+ + L + + L + Sbjct: 276 EPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 330 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 Score = 92.6 bits (229), Expect = 5e-20 Identities = 37/112 (33%), Positives = 59/112 (52%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L+ P T +T+ NK + G ++N ARG LVD + L++G +A AGFDVF Sbjct: 208 LNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAG 267 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 EP + + LPN F P++G++ +++E +A Q + +S AL Sbjct: 268 EPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMSYAL 319 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 Score = 92.3 bits (228), Expect = 8e-20 Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 28/204 (13%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP TKN++ + +S K G +IN +RG +VD ALA+ L S H+A A DVF Sbjct: 203 LHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPT 262 Query: 61 EPA-----LQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMA 115 EPA +PL NV P++G ST E+QE + +++A ++ Y +G +A+N Sbjct: 263 EPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFP 322 Query: 116 IISFEEAPLV--------KPFM------TLADHLGCFIGQLISESIQE-----IQIIYDG 156 +S +P + A+ Q ++ + I I D Sbjct: 323 EVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQ-YLQTSAQMGYVVIDIEADE 381 Query: 157 STAVMNTMVLNSAVLAGIVRVWRV 180 A + + + G +R R+ Sbjct: 382 DVAEKALQAMKA--IPGTIRA-RL 402 >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 Score = 91.4 bits (226), Expect = 1e-19 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH L +++N + + + G ++N ARGGLVDE ALA+ L+ G + A DV E Sbjct: 229 LHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 288 Query: 61 EPAL--QNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 EP Q PL PN+ C P+ + ++ ++ + A ++ + + + N Sbjct: 289 EPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKN 343 >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 Score = 89.0 bits (219), Expect = 8e-19 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + VP T +++++ + K G I+N ARG ++ ++AL L+SG + AG DV E Sbjct: 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF 285 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDG----VVSNALNM 114 EP + L + +V ++G +E+ + + +L+ G + + Sbjct: 286 EPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFA 343 >2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} Length = 334 Score = 87.4 bits (215), Expect = 2e-18 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 19/133 (14%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP T +T +++N+E +S K GV +IN ARG +VD +AL Q G + G DVFE Sbjct: 200 LHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFED 259 Query: 61 EPALQN----------------PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL- 103 E L L NV P++ T +S E++ + + ++ Sbjct: 260 EEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVK 319 Query: 104 --IDGVVSNALNM 114 ++ + N + Sbjct: 320 GDLEQIKGNFVVG 332 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 Score = 84.2 bits (207), Expect = 2e-17 Identities = 37/103 (35%), Positives = 56/103 (54%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 + PLT +T +I+N+E + +IN RG VDE L L G + AG DVFE Sbjct: 221 VACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFER 280 Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYL 103 EP + LFGL NV P++G+ TVE+++ +A + + + Sbjct: 281 EPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 Score = 83.6 bits (206), Expect = 3e-17 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 4/117 (3%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +PL T+ ++ ++L+ +N R ++D + + +L+ DV+ Sbjct: 180 CALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG 239 Query: 61 EPAL--QNPLFGLPNVFCAPYL--GASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 F LPNV P++ G ++ ++ + Y G N Sbjct: 240 RNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAK 296 >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 Score = 82.8 bits (203), Expect = 5e-17 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 H+ L ++T++I+ +L++ K +N +R LV+EN + L G A DVFE E Sbjct: 222 HLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETE 281 Query: 62 PALQN-PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120 P LQ L + N C P++G ES E + D L G V + N Sbjct: 282 PILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDIL-QGNVDSVANP------ 334 Query: 121 EAPLVKPFMTLAD 133 + P + A+ Sbjct: 335 --TALAPALIRAE 345 >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 Score = 79.2 bits (194), Expect = 6e-16 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 6/108 (5%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 + PL TK ++NKE LSK K G ++N ARG + +A L+SG + G DV+ + Sbjct: 228 NAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQ 287 Query: 62 PALQ-NPLFGLPNVFCA-----PYLGASTVESQEKVAIQLAHQMSDYL 103 PA + +P + N + A P+ +T+++Q + A + + + Sbjct: 288 PAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFF 335 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 Score = 79.2 bits (194), Expect = 7e-16 Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 1/141 (0%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 + + T+++L++ L+ + G ++N +RG +VD AL LL+ G E DV+E E Sbjct: 178 NRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE 237 Query: 62 PALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEE 121 P +P + P++ ++E + + Q+ + + ++ ++ Sbjct: 238 PQ-ADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVSLQDVLPETWLA 296 Query: 122 APLVKPFMTLADHLGCFIGQL 142 + P A L + Sbjct: 297 GLQLNPGCDPAWALATLCRAV 317 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} Length = 333 Score = 78.9 bits (193), Expect = 8e-16 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L +PLT T +I+N+E K G ++N RG LVDE A+ E ++ G + DVFE Sbjct: 206 LALPLTRDTYHIINEER-VKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264 Query: 61 EPALQNPLF-GLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISF 119 EP ++ LF P+ +E+QE V + + L V + +N ++ Sbjct: 265 EPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLVNKEVLEV 324 Query: 120 EEAPLVK 126 VK Sbjct: 325 RPIENVK 331 >3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} Length = 315 Score = 73.2 bits (178), Expect = 4e-14 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +P T +T I+N E L + G ++N ARG V E L L SG + A DVF E Sbjct: 200 LLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 Query: 62 PALQ-NPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMA 115 P Q +PL+ P V P++ A T ++ ++ ++ V+ ++ A Sbjct: 260 PLPQESPLWRHPRVAMTPHIAAVTRPAE--AIDYISRTITQLEKGEPVTGQVDRA 312 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 Score = 69.4 bits (168), Expect = 6e-13 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 15/126 (11%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 H P + ++ ++ L K K G ++NCARG LVD A+ E ++SG + G DV + E Sbjct: 205 HAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGE 264 Query: 62 PA----------LQNPLF-----GLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDG 106 + L+NPLF P V P+LG+ T E+ + + + D G Sbjct: 265 ASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETG 324 Query: 107 VVSNAL 112 N + Sbjct: 325 DCPNKI 330 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 Score = 67.0 bits (162), Expect = 3e-12 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHV ++ K I++ K V I+N +R V+ AL + ++ G V DVF Sbjct: 202 LHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261 Query: 61 EPALQN---PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDG 106 EP + L V ++GA T E+Q++VA + + + + Sbjct: 262 EPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKEL 310 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} Length = 324 Score = 66.6 bits (161), Expect = 4e-12 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +P T +T ++ K G + N RG ++E L L++G + A DVFE E Sbjct: 201 VLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260 Query: 62 PALQN-PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 P + PL+G PN+ P+ A + + VA ++ + ++ Sbjct: 261 PLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKID 311 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 Score = 64.8 bits (156), Expect = 1e-11 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +PLT T ++ + E +TK +IN RG VD AL L ++ A DV E E Sbjct: 198 ALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPE 257 Query: 62 PALQN-PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDG-VVSNALNMA 115 P + PL+ +V P++ + V A + ++ DG +V N +++ Sbjct: 258 PLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVDLN 313 >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 Score = 60.5 bits (145), Expect = 3e-10 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 +PLT+KT+ ++N L+ + + I+N AR +V + + L+ DV+ E Sbjct: 180 AIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNE 239 Query: 62 PALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLA-HQMSDYL 103 P + L N +P++ +AIQLA + ++ Sbjct: 240 PEI--TETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFF 280 >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* Length = 494 Score = 58.3 bits (141), Expect = 1e-09 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 16/154 (10%) Query: 9 TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPL 68 +++N +++ + + N + A Q + D + L Sbjct: 342 NYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQ-WENIKPQVDHIIFPDGKRVIL 400 Query: 69 FGLPNVFCAPYLGASTVESQEKVAIQLAHQ----MSDYLIDGVVSNALNMAIISFEE--A 122 + LG +T ++ +Q + + G +N + + +E A Sbjct: 401 LAEGRL---VNLGCATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVYVLPKHLDEKVA 457 Query: 123 PLVKPFMTLADHLGCFIGQLISESIQEIQIIYDG 156 L +G + +L + I + G Sbjct: 458 RLH------LARIGAQLSELSDDQAAYIGVSKAG 485 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.8 bits (85), Expect = 0.004 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 55/140 (39%) Query: 35 LVDENA--LAELLQSGHVAE----AGFDVFEVEPALQNP--------LFGLPNVFCAPYL 80 L+ +A L+EL+++ AE G ++ E L+NP L +P + C P + Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILE---WLENPSNTPDKDYLLSIP-ISC-PLI 241 Query: 81 GASTVESQEKVAIQLAH-------------QMSDYLI------DGVVSNALNMAII---- 117 G IQLAH ++ YL G+V+ A+ +A Sbjct: 242 GV----------IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-AVAIAETDSWE 290 Query: 118 SFEEAPLVKPFMTLADHLGC 137 SF + V+ +T+ +G Sbjct: 291 SFFVS--VRKAITVLFFIGV 308 Score = 28.8 bits (64), Expect = 0.91 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 22/52 (42%) Query: 4 PLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGF 55 LT++ NK+ +GV +I +A L + GF Sbjct: 514 VLTHR-----NKDG-----TGVRVI------------VAGTLDINPDDDYGF 543 Score = 25.7 bits (56), Expect = 8.1 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 16/57 (28%) Query: 103 LIDGVVSNALNMAIISF--EEAPLVKP------FMTLADHLGCFIGQLISESI-QEI 150 ++D V++N +N+ I F E+ ++ F T+ D G+L +E I +EI Sbjct: 1661 ILDIVINNPVNLT-IHFGGEKGKRIRENYSAMIFETIVD------GKLKTEKIFKEI 1710 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.5 bits (60), Expect = 2.6 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 28/144 (19%) Query: 15 KENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNV 74 KE +K + + + R + E AL + +G+ A+A + E++P N P + Sbjct: 738 KEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPR-ANIQLDFPEL 796 Query: 75 FCAPY-----LGASTVE---SQEKVAIQLA----------------HQMSDYLIDGVVSN 110 PY + + +E E+V + ++ ++G V Sbjct: 797 --KPYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEM 854 Query: 111 ALNMAIISFEEAPLV-KPFMTLAD 133 A M IS+ L +P+ D Sbjct: 855 AWIMGFISYHNGNLKGRPYTGWVD 878 Score = 27.1 bits (59), Expect = 2.7 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 19/115 (16%) Query: 92 AIQLAH--QMSDYLIDGVVSNALNM--------AIISFEEAPLVKPFMTLADHLGCFIGQ 141 I+L H S++ +++N L M + E P + + ++ + G F G Sbjct: 579 GIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRP-AQVILPMSPNHGTFGGD 637 Query: 142 -LISESIQEIQIIYD--GSTAVMNTMVLNSAVLAGIVRVWRVGANIISAPIIIKE 193 + SES ++ +++ S + N + + A++ W G ++SA II E Sbjct: 638 GMYSESKLSLETLFNRWHSESWANQLTVCGAIIG-----WTRGTGLMSANNIIAE 687 >3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral defense, cytokine, secreted; 2.80A {Homo sapiens} Length = 196 Score = 26.0 bits (57), Expect = 6.7 Identities = 12/29 (41%), Positives = 15/29 (51%) Query: 123 PLVKPFMTLADHLGCFIGQLISESIQEIQ 151 P+ + L D GC I Q S S QE+Q Sbjct: 23 PVARLRGALPDARGCHIAQFKSLSPQELQ 51 >3l2f_A Glycocyamine kinase beta chain; phosphagen kinase, transition state ANA kinase, transferase; HET: ADP; 2.30A {Namalycastis SP} PDB: 3l2e_B 3l2d_A* 3l2g_A* 3l2e_A Length = 390 Score = 25.4 bits (55), Expect = 9.5 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 9 TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVA--EAGFDVF 58 TK + K T +GV C + G+ + ++G V E ++ + Sbjct: 46 TKELYEKYWDKVTPNGVTFDKCIQTGVDNPGNKFYGKKTGCVFGDEYSYECY 97 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0567 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,634,535 Number of extensions: 70184 Number of successful extensions: 205 Number of sequences better than 10.0: 1 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 38 Length of query: 208 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 120 Effective length of database: 3,559,758 Effective search space: 427170960 Effective search space used: 427170960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.9 bits)