RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.34_1
         (208 letters)



>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
           {Hyphomicrobium methylovorum [TaxId: 84]}
          Length = 191

 Score = 80.0 bits (196), Expect = 1e-16
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           L+ P T +T+   NK  +     G  ++N ARG LVD   +   L++G +A AGFDVF  
Sbjct: 109 LNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAG 168

Query: 61  EPALQNPLFGLPNVFCAPYLGAS 83
           EP +    + LPN F  P++G++
Sbjct: 169 EPNINEGYYDLPNTFLFPHIGSA 191


>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
           {Escherichia coli [TaxId: 562]}
          Length = 188

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVP    TKN++  + +S  K G  +IN +RG +VD  ALA+ L S H+A A  DVF  
Sbjct: 102 LHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPT 161

Query: 61  EPA-----LQNPLFGLPNVFCAPYLG 81
           EPA       +PL    NV   P++G
Sbjct: 162 EPATNSDPFTSPLAEFDNVLLTPHIG 187


>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 184

 Score = 69.6 bits (169), Expect = 2e-13
 Identities = 43/81 (53%), Positives = 55/81 (67%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           +H+P T +T  +++KE L+KTK GV I+N ARGGLVDE ALA+ +  GHV  AG DVF  
Sbjct: 104 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT 163

Query: 61  EPALQNPLFGLPNVFCAPYLG 81
           EP   +PLF L  V   P+LG
Sbjct: 164 EPCTDSPLFELAQVVVTPHLG 184


>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
           strain 101 [TaxId: 306]}
          Length = 188

 Score = 68.5 bits (166), Expect = 4e-13
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           L+ PL  +T++++N E L   K G  I+N ARG L D +A+A  L+SG +A    DV+  
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 61  EPALQN-PLFGLPNVFCAPYLG 81
           +PA ++ P   +P     P++ 
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187


>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
           (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 193

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LH  L     +++N   + + + G  ++N ARGGLVDE ALA+ L+ G +  A  DV E 
Sbjct: 110 LHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 169

Query: 61  EPAL--QNPLFGLPNVFCAP 78
           EP    Q PL   PN+ C P
Sbjct: 170 EPFSFSQGPLKDAPNLICTP 189


>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase
           SerA {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 135

 Score = 58.4 bits (141), Expect = 5e-10
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 120 EEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWR 179
                V P++ L   LG   G L  E    + +   G  A     VL  + L G+     
Sbjct: 3   VVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVI 62

Query: 180 VG-ANIISAPIIIKENAIILSTIKRDKSGV 208
                 ++AP +  E  +     K  +S  
Sbjct: 63  EDAVTFVNAPALAAERGVTAEICKASESPN 92


>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
           {Lactobacillus casei [TaxId: 1582]}
          Length = 199

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 14/95 (14%)

Query: 1   LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
           LHVP   +  +I+N+   +  K G  +IN AR  L+D  A+   L+SG +A  G D +E 
Sbjct: 103 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 162

Query: 61  EPA--------------LQNPLFGLPNVFCAPYLG 81
           E                L + L G+PNV  +P++ 
Sbjct: 163 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197


>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
           helveticus [TaxId: 1587]}
          Length = 197

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 2   HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61
           HVP      +++N E+++K K  V I+N +RG LVD +A+   L SG +     DV+E E
Sbjct: 103 HVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 162

Query: 62  PALQN--------------PLFGLPNVFCAP 78
             + N               L   PNV   P
Sbjct: 163 VGIFNEDWEGKEFPDARLADLIARPNVLVTP 193


>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
           Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 181

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 26  CIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL--QNPLFGLPNVFCAPYLG 81
             +N  R  ++D + +  +L+         DV+            F LPNV   P++ 
Sbjct: 123 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 180


>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
          protein C19orf7 (KIAA1064) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 56

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 2  HVPLTNKTKNILNK 15
          H PLT +T+ +L+K
Sbjct: 22 HDPLTEETRELLDK 35


>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 279

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 53  AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAH---QMSDYLIDGVVS 109
           A  +++     L   ++ L N++   +  A   +   +   +      + +  +  G +S
Sbjct: 182 APDELYTPHSWLLRVVYALLNLY-EHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPIS 240

Query: 110 NALNMAIISFEEAP 123
             +NM +  + + P
Sbjct: 241 KTINMLVRWYVDGP 254


>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 319

 Score = 25.1 bits (54), Expect = 4.4
 Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 145 ESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWRVGANIISAP 188
           +S+ +I   Y        T+V+ ++           G + ++  
Sbjct: 203 KSVTKIYNYYK--KFGYKTIVMGASFRNTGEIKALAGCDFLTIS 244


>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol
           dehydrogenase) {Silverleaf whitefly (Bemisia
           argentifolii) [TaxId: 77855]}
          Length = 170

 Score = 24.2 bits (51), Expect = 8.3
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 117 ISFEEAPLVKPFMT 130
           +S EE  L++P   
Sbjct: 1   VSLEEGALLEPLSV 14


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 707,689
Number of extensions: 30086
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 14
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)