RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.34_1 (208 letters) >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 Score = 80.0 bits (196), Expect = 1e-16 Identities = 31/83 (37%), Positives = 47/83 (56%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L+ P T +T+ NK + G ++N ARG LVD + L++G +A AGFDVF Sbjct: 109 LNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAG 168 Query: 61 EPALQNPLFGLPNVFCAPYLGAS 83 EP + + LPN F P++G++ Sbjct: 169 EPNINEGYYDLPNTFLFPHIGSA 191 >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 Score = 73.1 bits (178), Expect = 1e-14 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP TKN++ + +S K G +IN +RG +VD ALA+ L S H+A A DVF Sbjct: 102 LHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPT 161 Query: 61 EPA-----LQNPLFGLPNVFCAPYLG 81 EPA +PL NV P++G Sbjct: 162 EPATNSDPFTSPLAEFDNVLLTPHIG 187 >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 Score = 69.6 bits (169), Expect = 2e-13 Identities = 43/81 (53%), Positives = 55/81 (67%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 +H+P T +T +++KE L+KTK GV I+N ARGGLVDE ALA+ + GHV AG DVF Sbjct: 104 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT 163 Query: 61 EPALQNPLFGLPNVFCAPYLG 81 EP +PLF L V P+LG Sbjct: 164 EPCTDSPLFELAQVVVTPHLG 184 >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 Score = 68.5 bits (166), Expect = 4e-13 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 L+ PL +T++++N E L K G I+N ARG L D +A+A L+SG +A DV+ Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165 Query: 61 EPALQN-PLFGLPNVFCAPYLG 81 +PA ++ P +P P++ Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187 >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 Score = 62.4 bits (150), Expect = 2e-11 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LH L +++N + + + G ++N ARGGLVDE ALA+ L+ G + A DV E Sbjct: 110 LHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 169 Query: 61 EPAL--QNPLFGLPNVFCAP 78 EP Q PL PN+ C P Sbjct: 170 EPFSFSQGPLKDAPNLICTP 189 >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 Score = 58.4 bits (141), Expect = 5e-10 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 1/90 (1%) Query: 120 EEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWR 179 V P++ L LG G L E + + G A VL + L G+ Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVI 62 Query: 180 VG-ANIISAPIIIKENAIILSTIKRDKSGV 208 ++AP + E + K +S Sbjct: 63 EDAVTFVNAPALAAERGVTAEICKASESPN 92 >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 Score = 46.0 bits (107), Expect = 2e-06 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 14/95 (14%) Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60 LHVP + +I+N+ + K G +IN AR L+D A+ L+SG +A G D +E Sbjct: 103 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 162 Query: 61 EPA--------------LQNPLFGLPNVFCAPYLG 81 E L + L G+PNV +P++ Sbjct: 163 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197 >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 Score = 45.6 bits (106), Expect = 3e-06 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 14/91 (15%) Query: 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVE 61 HVP +++N E+++K K V I+N +RG LVD +A+ L SG + DV+E E Sbjct: 103 HVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 162 Query: 62 PALQN--------------PLFGLPNVFCAP 78 + N L PNV P Sbjct: 163 VGIFNEDWEGKEFPDARLADLIARPNVLVTP 193 >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 Score = 43.6 bits (101), Expect = 1e-05 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 26 CIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL--QNPLFGLPNVFCAPYLG 81 +N R ++D + + +L+ DV+ F LPNV P++ Sbjct: 123 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 180 >d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Score = 26.8 bits (59), Expect = 1.4 Identities = 7/14 (50%), Positives = 11/14 (78%) Query: 2 HVPLTNKTKNILNK 15 H PLT +T+ +L+K Sbjct: 22 HDPLTEETRELLDK 35 >d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Score = 26.4 bits (58), Expect = 1.7 Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Query: 53 AGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAH---QMSDYLIDGVVS 109 A +++ L ++ L N++ + A + + + + + + G +S Sbjct: 182 APDELYTPHSWLLRVVYALLNLY-EHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPIS 240 Query: 110 NALNMAIISFEEAP 123 +NM + + + P Sbjct: 241 KTINMLVRWYVDGP 254 >d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus) [TaxId: 10090]} Length = 319 Score = 25.1 bits (54), Expect = 4.4 Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 2/44 (4%) Query: 145 ESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWRVGANIISAP 188 +S+ +I Y T+V+ ++ G + ++ Sbjct: 203 KSVTKIYNYYK--KFGYKTIVMGASFRNTGEIKALAGCDFLTIS 244 >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170 Score = 24.2 bits (51), Expect = 8.3 Identities = 5/14 (35%), Positives = 8/14 (57%) Query: 117 ISFEEAPLVKPFMT 130 +S EE L++P Sbjct: 1 VSLEEGALLEPLSV 14 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0423 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 707,689 Number of extensions: 30086 Number of successful extensions: 71 Number of sequences better than 10.0: 1 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 14 Length of query: 208 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 127 Effective length of database: 1,295,466 Effective search space: 164524182 Effective search space used: 164524182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.2 bits)