RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.348_1
         (42 letters)



>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
          Length = 646

 Score = 27.3 bits (60), Expect = 0.83
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 5   KDVERIFAVFKKIFFEKSIGKNL 27
           + +ER F++ KK+FF+K   K+ 
Sbjct: 191 RTIERFFSIIKKLFFKKKFSKSF 213


>gnl|CDD|181849 PRK09429, mepA, penicillin-insensitive murein endopeptidase;
           Reviewed.
          Length = 275

 Score = 26.0 bits (58), Expect = 2.3
 Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 2/16 (12%)

Query: 3   SDKDVERIF--AVFKK 16
            D  V RIF     KK
Sbjct: 169 QDPRVTRIFVNPAIKK 184


>gnl|CDD|130489 TIGR01422, phosphonatase, phosphonoacetaldehyde hydrolase.  This
          enzyme is a member of the Haloacid Dehalogenase (HAD)
          superfamily of aspartate-nucleophile hydrolases
          (pfam00702), and contains a modified version of the
          conserved catalytic motifs of that superfamily: the
          first motif is usually DxDx(T/V), here it is DxAxT, and
          in the third motif the normal conserved lysine is
          instead an arginine. Additionally, the enzyme contains
          a unique conserved catalytic lysine (B. cereus pos. 53)
          which is involved in the binding and activation of the
          substrate through the formation of a Schiff base. The
          substrate of this enzyme is the product of
          2-aminoethylphosphonate (AEP) transaminase,
          phosphonoacetaldehyde. This degradation pathway for AEP
          may be related to its toxic properties which are
          utilized by microorganisms as a chemical warfare agent.
          Length = 253

 Score = 25.8 bits (57), Expect = 2.6
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 3  SDKDVERIFAVFKKIFFEK 21
          ++ D+E I+  F+ +   K
Sbjct: 75 TEADIEAIYEAFEPLQLAK 93


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 633,582
Number of extensions: 22111
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 7
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.1 bits)