RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.348_1 (42 letters) >gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed. Length = 646 Score = 27.3 bits (60), Expect = 0.83 Identities = 9/23 (39%), Positives = 16/23 (69%) Query: 5 KDVERIFAVFKKIFFEKSIGKNL 27 + +ER F++ KK+FF+K K+ Sbjct: 191 RTIERFFSIIKKLFFKKKFSKSF 213 >gnl|CDD|181849 PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed. Length = 275 Score = 26.0 bits (58), Expect = 2.3 Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 2/16 (12%) Query: 3 SDKDVERIF--AVFKK 16 D V RIF KK Sbjct: 169 QDPRVTRIFVNPAIKK 184 >gnl|CDD|130489 TIGR01422, phosphonatase, phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent. Length = 253 Score = 25.8 bits (57), Expect = 2.6 Identities = 5/19 (26%), Positives = 11/19 (57%) Query: 3 SDKDVERIFAVFKKIFFEK 21 ++ D+E I+ F+ + K Sbjct: 75 TEADIEAIYEAFEPLQLAK 93 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.328 0.144 0.432 Gapped Lambda K H 0.267 0.0700 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 633,582 Number of extensions: 22111 Number of successful extensions: 85 Number of sequences better than 10.0: 1 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 7 Length of query: 42 Length of database: 5,994,473 Length adjustment: 16 Effective length of query: 26 Effective length of database: 5,648,745 Effective search space: 146867370 Effective search space used: 146867370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.1 bits)