RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.348_1 (42 letters) >g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 257 Score = 25.1 bits (54), Expect = 1.6 Identities = 4/26 (15%), Positives = 11/26 (42%) Query: 3 SDKDVERIFAVFKKIFFEKSIGKNLN 28 D D + +FK + ++ + + Sbjct: 49 GDVDHSTLVTLFKLLGYDVHVLCDQT 74 >d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Length = 277 Score = 24.8 bits (53), Expect = 1.8 Identities = 6/26 (23%), Positives = 12/26 (46%) Query: 3 SDKDVERIFAVFKKIFFEKSIGKNLN 28 S+ D E++ F + F + +L Sbjct: 44 SNIDCEKLRRRFSSLHFMVEVKGDLT 69 >d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 Score = 25.1 bits (54), Expect = 1.8 Identities = 7/26 (26%), Positives = 15/26 (57%) Query: 3 SDKDVERIFAVFKKIFFEKSIGKNLN 28 +DKD E +F F+ + F+ + + + Sbjct: 33 TDKDAEALFKCFRSLGFDVIVYNDCS 58 >d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Length = 256 Score = 24.7 bits (53), Expect = 2.0 Identities = 6/27 (22%), Positives = 14/27 (51%) Query: 2 NSDKDVERIFAVFKKIFFEKSIGKNLN 28 ++ D + + V K + F+ ++ NL Sbjct: 42 GTNVDSDNLSKVLKTLGFKVTVFPNLK 68 >g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo sapiens) [TaxId: 9606]} Length = 238 Score = 24.3 bits (52), Expect = 2.6 Identities = 5/26 (19%), Positives = 11/26 (42%) Query: 3 SDKDVERIFAVFKKIFFEKSIGKNLN 28 +D D + F+ + +E +L Sbjct: 39 TDVDAANLRETFRNLKYEVRNKNDLT 64 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.328 0.144 0.432 Gapped Lambda K H 0.267 0.0484 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 155,612 Number of extensions: 4104 Number of successful extensions: 25 Number of sequences better than 10.0: 1 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 8 Length of query: 42 Length of database: 2,407,596 Length adjustment: 15 Effective length of query: 27 Effective length of database: 2,201,646 Effective search space: 59444442 Effective search space used: 59444442 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 47 (22.5 bits)