RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.348_1
         (42 letters)



>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 257

 Score = 25.1 bits (54), Expect = 1.6
 Identities = 4/26 (15%), Positives = 11/26 (42%)

Query: 3  SDKDVERIFAVFKKIFFEKSIGKNLN 28
           D D   +  +FK + ++  +  +  
Sbjct: 49 GDVDHSTLVTLFKLLGYDVHVLCDQT 74


>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 277

 Score = 24.8 bits (53), Expect = 1.8
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 3  SDKDVERIFAVFKKIFFEKSIGKNLN 28
          S+ D E++   F  + F   +  +L 
Sbjct: 44 SNIDCEKLRRRFSSLHFMVEVKGDLT 69


>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 245

 Score = 25.1 bits (54), Expect = 1.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 3  SDKDVERIFAVFKKIFFEKSIGKNLN 28
          +DKD E +F  F+ + F+  +  + +
Sbjct: 33 TDKDAEALFKCFRSLGFDVIVYNDCS 58


>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera
          frugiperda) [TaxId: 7108]}
          Length = 256

 Score = 24.7 bits (53), Expect = 2.0
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 2  NSDKDVERIFAVFKKIFFEKSIGKNLN 28
           ++ D + +  V K + F+ ++  NL 
Sbjct: 42 GTNVDSDNLSKVLKTLGFKVTVFPNLK 68


>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 238

 Score = 24.3 bits (52), Expect = 2.6
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 3  SDKDVERIFAVFKKIFFEKSIGKNLN 28
          +D D   +   F+ + +E     +L 
Sbjct: 39 TDVDAANLRETFRNLKYEVRNKNDLT 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 155,612
Number of extensions: 4104
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 8
Length of query: 42
Length of database: 2,407,596
Length adjustment: 15
Effective length of query: 27
Effective length of database: 2,201,646
Effective search space: 59444442
Effective search space used: 59444442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)