Query 537021.9.peg.349_1 Match_columns 50 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:03:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_349.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ofq_S 50S ribosomal protein L 36.1 17 0.0007 17.8 2.2 22 29-50 12-33 (110) 2 1i4j_A 50S ribosomal protein L 33.3 12 0.00051 18.5 1.1 31 20-50 1-33 (110) 3 2ftc_M Mitochondrial ribosomal 25.1 15 0.00065 18.0 0.5 21 30-50 9-29 (110) 4 2zjr_P 50S ribosomal protein L 18.0 25 0.001 17.0 0.3 22 29-50 33-54 (134) 5 1vq8_R 50S ribosomal protein L 16.2 30 0.0013 16.5 0.4 24 27-50 22-45 (155) 6 3bbo_U Ribosomal protein L22; 16.1 36 0.0015 16.1 0.8 21 30-50 42-62 (199) 7 1ywl_A Hypothetical UPF0213 pr 15.9 72 0.003 14.6 3.0 33 7-44 6-38 (96) 8 2zkr_r 60S ribosomal protein L 11.7 48 0.002 15.5 0.4 27 24-50 19-45 (184) 9 1zg2_A Hypothetical UPF0213 pr 8.8 1.3E+02 0.0053 13.4 3.2 34 6-44 6-39 (107) 10 2wwb_I 60S ribosomal protein L 8.5 96 0.004 14.0 1.0 25 26-50 21-45 (184) No 1 >3ofq_S 50S ribosomal protein L22; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Probab=36.08 E-value=17 Score=17.80 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 0466776776530563210249 Q 537021.9.peg.3 29 TSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 29 tslvtalryaqhikgmsvdnai 50 (50) .|---+-..+..|+||+||.|+ T Consensus 12 ~SpkK~r~va~~IRG~~v~~Al 33 (110) T 3ofq_S 12 SSAQKVRLVADLIRGKKVSQAL 33 (110) T ss_dssp SCHHHHHHHHTTSSSSCSSSTT T ss_pred CCHHHHHHHHHHHCCCCHHHHH T ss_conf 2879999999998699299999 No 2 >1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Probab=33.27 E-value=12 Score=18.49 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=20.1 Q ss_pred EEEEEEECC--HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 055212113--0466776776530563210249 Q 537021.9.peg.3 20 MEYSGTMRN--TSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 20 meysgtmrn--tslvtalryaqhikgmsvdnai 50 (50) ||.-...|+ .|---+-+.+..|+||+||.|+ T Consensus 1 Me~~A~~r~ir~Sp~K~r~va~~IRG~~v~~Al 33 (110) T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEAR 33 (110) T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 907988186532889999999998699199999 No 3 >2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_M Probab=25.07 E-value=15 Score=17.96 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCC Q ss_conf 466776776530563210249 Q 537021.9.peg.3 30 SLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 30 slvtalryaqhikgmsvdnai 50 (50) |--.+-+-++.|+||+||.|+ T Consensus 9 SpkK~r~v~~~IrG~~v~~A~ 29 (110) T 2ftc_M 9 SKDKMWYLAKLIRGMSIDQAL 29 (110) T ss_pred CHHHHHHHHHHHCCCCHHHHH T ss_conf 879999999998699199999 No 4 >2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 1pnu_Q 1pny_Q 1vor_T 1vou_T 1vow_T ... Probab=17.98 E-value=25 Score=16.95 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 0466776776530563210249 Q 537021.9.peg.3 29 TSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 29 tslvtalryaqhikgmsvdnai 50 (50) .|---+-+.+..|+|++||.|+ T Consensus 33 ~Sp~K~r~va~~IrG~~v~eAl 54 (134) T 2zjr_P 33 MSPRKVRLVVDVIRGKSVQDAE 54 (134) T ss_dssp SCHHHHHHHHHHSTTSBHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHHHH T ss_conf 4889999999998699099999 No 5 >1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Probab=16.21 E-value=30 Score=16.52 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=19.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 130466776776530563210249 Q 537021.9.peg.3 27 RNTSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 27 rntslvtalryaqhikgmsvdnai 50 (50) -..|.-.+..-+..|+||+++.|+ T Consensus 22 ~riS~kk~~~v~~~Irg~~v~~A~ 45 (155) T 1vq8_R 22 RQMSFKHSKAIAREIKGKTAGEAV 45 (155) T ss_dssp ECSCHHHHHHHHHHHTTSBHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 755689999999997698999999 No 6 >3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=16.14 E-value=36 Score=16.11 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCC Q ss_conf 466776776530563210249 Q 537021.9.peg.3 30 SLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 30 slvtalryaqhikgmsvdnai 50 (50) |---+-+.+..|+||+|+.|+ T Consensus 42 SpkK~R~VadlIRGk~V~eAl 62 (199) T 3bbo_U 42 SVDKARRVIDQIRGRSYAETL 62 (199) T ss_dssp CSSSSSTTHHHHTTCBTTTTT T ss_pred CHHHHHHHHHHHCCCCHHHHH T ss_conf 879999999998699299999 No 7 >1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis} Probab=15.86 E-value=72 Score=14.61 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=23.7 Q ss_pred EEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCC Q ss_conf 86762121435750552121130466776776530563 Q 537021.9.peg.3 7 KYYFYQLSSWNGNMEYSGTMRNTSLVTALRYAQHIKGM 44 (50) Q Consensus 7 kyyfyqlsswngnmeysgtmrntslvtalryaqhikgm 44 (50) .||+|-|.+=+|. -|.|--.| -.-|..||..|. T Consensus 6 ~~yVYIL~~~~~~-lY~G~T~d----l~rRl~qHn~g~ 38 (96) T 1ywl_A 6 SHYFYVLLCQDGS-FYGGYTTE----PERRLTEHNSGT 38 (96) T ss_dssp SEEEEEEECTTCC-CEEEEESC----HHHHHHHHHHHH T ss_pred CEEEEEEEECCCC-EEEEECCC----HHHHHHHHHCCC T ss_conf 6799999938899-99998199----999999996648 No 8 >2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=11.72 E-value=48 Score=15.51 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=19.7 Q ss_pred EEECCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 121130466776776530563210249 Q 537021.9.peg.3 24 GTMRNTSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 24 gtmrntslvtalryaqhikgmsvdnai 50 (50) +.--..|.-.+-.-+.-|+||.++.|+ T Consensus 19 ~~~~riS~Kk~r~va~~IrG~~v~~A~ 45 (184) T 2zkr_r 19 GSNLRVHFKNTRETAQAIKGMHIRKAT 45 (184) T ss_dssp ECSCCSCHHHHHHHHHHHTTSBHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 687747679999999998799099999 No 9 >1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans} Probab=8.82 E-value=1.3e+02 Score=13.41 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=25.6 Q ss_pred EEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCC Q ss_conf 886762121435750552121130466776776530563 Q 537021.9.peg.3 6 IKYYFYQLSSWNGNMEYSGTMRNTSLVTALRYAQHIKGM 44 (50) Q Consensus 6 ikyyfyqlsswngnmeysgtmrntslvtalryaqhikgm 44 (50) ..||.|-|.|=+|. -|-|.-.| -.-|..||..|- T Consensus 6 M~~yVYIL~~~~~~-~Y~G~T~d----l~rRl~qHn~g~ 39 (107) T 1zg2_A 6 MNHYVYILECKDGS-WYTGYTTD----VDRRIKKHASGK 39 (107) T ss_dssp CCEEEEEEECTTSC-EEEEEECC----HHHHHHHHHHHT T ss_pred CCEEEEEEEECCCC-EEEEECCC----HHHHHHHHHCCC T ss_conf 61899999938899-99998599----999999983817 No 10 >2wwb_I 60S ribosomal protein L17-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_I 2ww9_I 1s1i_N Probab=8.49 E-value=96 Score=13.99 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=19.2 Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 1130466776776530563210249 Q 537021.9.peg.3 26 MRNTSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 26 mrntslvtalryaqhikgmsvdnai 50 (50) --..|.-.+-.-+.-|+||+++.|+ T Consensus 21 ~lriS~Kk~r~va~~IrG~~v~~A~ 45 (184) T 2wwb_I 21 YLRVSFKNTRETAQAINGWELTKAQ 45 (184) T ss_dssp EESSCHHHHHHHHHHSCSSCHHHHH T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 8724669999999998798499999 Done!