Query 537021.9.peg.349_1 Match_columns 50 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 19:01:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_349.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1i4ja_ d.55.1.1 (A:) Ribosoma 37.7 5.4 0.00039 19.1 1.1 31 20-50 1-33 (110) 2 d1vqor1 d.55.1.1 (R:1-150) Rib 21.3 15 0.0011 16.8 1.0 26 25-50 19-44 (150) 3 d2zjrp1 d.55.1.1 (P:8-134) Rib 20.5 12 0.00084 17.4 0.3 22 29-50 26-47 (127) 4 d2gycq1 d.55.1.1 (Q:5-110) Rib 13.2 12 0.0009 17.2 -1.0 16 35-50 14-29 (106) 5 d1exha_ b.2.2.1 (A:) Exo-1,4-b 5.0 1.2E+02 0.0087 12.3 1.5 20 11-30 12-31 (110) 6 d1p42a2 d.14.1.7 (A:128-280) U 4.6 1.1E+02 0.0079 12.5 0.8 22 29-50 62-83 (147) 7 d1n9ra_ b.38.1.1 (A:) Small nu 4.2 1.4E+02 0.01 12.0 1.4 13 17-29 15-27 (68) 8 d2h9fa1 d.21.1.4 (A:1-182) Hyp 3.7 1.5E+02 0.011 11.8 2.1 26 6-31 84-109 (182) 9 d1nuia1 e.13.1.2 (A:64-255) Pr 3.7 1.5E+02 0.011 11.8 0.9 31 7-38 2-32 (192) 10 d1fs1b1 a.157.1.1 (B:86-140) C 3.0 1.8E+02 0.013 11.4 1.2 15 33-47 34-48 (55) No 1 >d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Probab=37.65 E-value=5.4 Score=19.05 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=20.4 Q ss_pred EEEEEEECC--HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 055212113--0466776776530563210249 Q 537021.9.peg.3 20 MEYSGTMRN--TSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 20 meysgtmrn--tslvtalryaqhikgmsvdnai 50 (50) ||.-.+.|+ .|---+-+.+..|+||+|+.|+ T Consensus 1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al 33 (110) T d1i4ja_ 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEAR 33 (110) T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHH T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 907988086634889999999998699199999 No 2 >d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=21.27 E-value=15 Score=16.82 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=20.3 Q ss_pred EECCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 21130466776776530563210249 Q 537021.9.peg.3 25 TMRNTSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 25 tmrntslvtalryaqhikgmsvdnai 50 (50) ..-..|.-.+-.-+..|+||+||.|+ T Consensus 19 ~~~riS~kK~~~va~~IrGk~v~~A~ 44 (150) T d1vqor1 19 RERQMSFKHSKAIAREIKGKTAGEAV 44 (150) T ss_dssp EEECSCHHHHHHHHHHHTTSBHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 78857689999999998598799999 No 3 >d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Probab=20.50 E-value=12 Score=17.40 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 0466776776530563210249 Q 537021.9.peg.3 29 TSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 29 tslvtalryaqhikgmsvdnai 50 (50) .|.--+-+-++.|+||+||.|+ T Consensus 26 ~Sp~K~r~v~~~IrG~~v~eAl 47 (127) T d2zjrp1 26 MSPRKVRLVVDVIRGKSVQDAE 47 (127) T ss_dssp SCHHHHHHHHHHSTTSBHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHHHH T ss_conf 5889999999998699199999 No 4 >d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Probab=13.15 E-value=12 Score=17.24 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=10.7 Q ss_pred HHHHHHHCCCCCCCCC Q ss_conf 6776530563210249 Q 537021.9.peg.3 35 LRYAQHIKGMSVDNAI 50 (50) Q Consensus 35 lryaqhikgmsvdnai 50 (50) -..+..|+||+||.|+ T Consensus 14 r~va~~IrG~~v~~A~ 29 (106) T d2gycq1 14 RLVADLIRGKKVSQAL 29 (106) T ss_dssp CSSSSSSSSSCSHHHH T ss_pred HHHHHHHCCCCHHHHH T ss_conf 9999998699199999 No 5 >d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Probab=4.98 E-value=1.2e+02 Score=12.33 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=11.1 Q ss_pred EEECCCCCCEEEEEEECCHH Q ss_conf 21214357505521211304 Q 537021.9.peg.3 11 YQLSSWNGNMEYSGTMRNTS 30 (50) Q Consensus 11 yqlsswngnmeysgtmrnts 30 (50) |+.++|++.....=+.+|++ T Consensus 12 y~~n~W~~Gf~~~vtVtN~~ 31 (110) T d1exha_ 12 WGVNQWNTGFTANVTVKNTS 31 (110) T ss_dssp CCEEECSSCEEEEEEEEECS T ss_pred EEECCCCCCCEEEEEEEECC T ss_conf 99764799868999999499 No 6 >d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]} Probab=4.64 E-value=1.1e+02 Score=12.53 Aligned_cols=22 Identities=18% Similarity=0.156 Sum_probs=16.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 0466776776530563210249 Q 537021.9.peg.3 29 TSLVTALRYAQHIKGMSVDNAI 50 (50) Q Consensus 29 tslvtalryaqhikgmsvdnai 50 (50) -.-+.+|+-..-+||-|.+||| T Consensus 62 ~~eie~L~~~Gl~~Ggsl~nai 83 (147) T d1p42a2 62 DWEIEHIKKVGLGKGGSLKNTL 83 (147) T ss_dssp HHHHHHHHHTTCCTTCCTTTCE T ss_pred HHHHHHHHCCCCCCCCCCCCCE T ss_conf 9989998655712773601232 No 7 >d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.16 E-value=1.4e+02 Score=12.00 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=9.1 Q ss_pred CCCEEEEEEECCH Q ss_conf 5750552121130 Q 537021.9.peg.3 17 NGNMEYSGTMRNT 29 (50) Q Consensus 17 ngnmeysgtmrnt 29 (50) +|..+|.|+++.. T Consensus 15 ~~~~~~~G~L~~~ 27 (68) T d1n9ra_ 15 FNSTEYRGTLVST 27 (68) T ss_dssp STTEEEEEEEEEC T ss_pred CCCEEEEEEEEEE T ss_conf 4999999999999 No 8 >d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]} Probab=3.66 E-value=1.5e+02 Score=11.77 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.7 Q ss_pred EEEEEEEECCCCCCEEEEEEECCHHH Q ss_conf 88676212143575055212113046 Q 537021.9.peg.3 6 IKYYFYQLSSWNGNMEYSGTMRNTSL 31 (50) Q Consensus 6 ikyyfyqlsswngnmeysgtmrntsl 31 (50) |.|.|-|++-=..-..|++.--|-+- T Consensus 84 vDY~F~QV~v~~~~VD~~~NCGNm~s 109 (182) T d2h9fa1 84 VDYLYGQVSIDKPFVDWSGNCGNLST 109 (182) T ss_dssp EEEEEEEECSSSSCEECSCCCHHHHH T ss_pred EEEEEEEEEECCCEEECCCCCCCHHH T ss_conf 57899988615643203666452333 No 9 >d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase protein {Bacteriophage T7 [TaxId: 10760]} Probab=3.65 E-value=1.5e+02 Score=11.77 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=21.3 Q ss_pred EEEEEEECCCCCCEEEEEEECCHHHHHHHHHH Q ss_conf 86762121435750552121130466776776 Q 537021.9.peg.3 7 KYYFYQLSSWNGNMEYSGTMRNTSLVTALRYA 38 (50) Q Consensus 7 kyyfyqlsswngnmeysgtmrntslvtalrya 38 (50) +|..+.+++++|..+|- +-|+-|.-|+-+|. T Consensus 2 ~~~~~~~~~~~g~~~~L-~~RGIs~et~~~~~ 32 (192) T d1nuia1 2 TYNVWNFGESNGRYSAL-TARGISKETCQKAG 32 (192) T ss_dssp CBCCBCGGGTTCBCCCB-GGGTBCHHHHHHHT T ss_pred CEEECCCCCCCCCHHHH-HHCCCCHHHHHHCC T ss_conf 16775676577781234-55839999999779 No 10 >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.00 E-value=1.8e+02 Score=11.42 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=10.9 Q ss_pred HHHHHHHHHCCCCCC Q ss_conf 776776530563210 Q 537021.9.peg.3 33 TALRYAQHIKGMSVD 47 (50) Q Consensus 33 talryaqhikgmsvd 47 (50) +.-+-|..|||+|+. T Consensus 34 ~c~~vA~~ikgKt~e 48 (55) T d1fs1b1 34 TCKTVANMIKGKTPE 48 (55) T ss_dssp HHHHHHHHHTTCCHH T ss_pred HHHHHHHHHCCCCHH T ss_conf 999999988699999 Done!