Query 537021.9.peg.36_1
Match_columns 29
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 16:27:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_36.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3kf8_B Protein TEN1; OB fold; 14.1 82 0.0024 15.1 1.4 12 2-13 80-91 (102)
2 >1l6h_A LTP2, non-specific lip 4.2 1.5E+02 0.0044 13.9 -0.8 16 13-28 15-30 (69)
3 >1oy5_A TRNA (guanine-N(1)-)-m 4.1 3.2E+02 0.0096 12.2 0.8 15 2-16 111-125 (171)
4 >2pv4_A Uncharacterized protei 4.0 1.5E+02 0.0045 13.9 -0.9 22 8-29 107-128 (145)
5 >2jz1_A Protein doublesex; sex 4.0 2E+02 0.0059 13.3 -0.3 12 6-17 65-76 (80)
6 >2v9p_A Replication protein E1 3.9 3.7E+02 0.011 12.0 1.3 18 11-28 49-66 (76)
7 >2io8_A Bifunctional glutathio 3.6 3E+02 0.009 12.4 0.3 10 6-15 176-185 (205)
8 >1uz5_A MOEA protein, 402AA lo 3.4 3.6E+02 0.011 12.0 0.6 8 8-15 7-14 (95)
9 >1dp7_P MHC class II transcrip 3.3 3.7E+02 0.011 12.0 0.6 9 7-15 68-76 (76)
10 >2dkh_A 3-hydroxybenzoate hydr 3.2 2.3E+02 0.0069 12.9 -0.5 11 5-15 2-12 (162)
No 1
>>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404} (B:1-102)
Probab=14.12 E-value=82 Score=15.13 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=8.5
Q ss_pred EEEEEEECCEEE
Q ss_conf 068451056232
Q 537021.9.peg.3 2 VRIIGHYDGLAV 13 (29)
Q Consensus 2 vriighydglav 13 (29)
|.|.|-|||-.+
T Consensus 80 VnI~g~YdGe~I 91 (102)
T 3kf8_B 80 VNIDAFYDGESI 91 (102)
T ss_dssp EEEEEEECSSCE
T ss_pred EEEEEEECCCCC
T ss_conf 999997177504
No 2
>>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} (A:)
Probab=4.20 E-value=1.5e+02 Score=13.88 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=10.2
Q ss_pred EEHHHHHHHHHHHHHC
Q ss_conf 2005789899999730
Q 537021.9.peg.3 13 VRSTAKVTQSCCRMLK 28 (29)
Q Consensus 13 vrstakvtqsccrmlk 28 (29)
+-+.++.+..||..||
T Consensus 15 i~~g~~Ps~~CC~kLk 30 (69)
T 1l6h_A 15 IAGGARPTAACCSSLR 30 (69)
T ss_dssp HTTCCSTTHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHH
T ss_conf 8569998099999998
No 3
>>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171)
Probab=4.05 E-value=3.2e+02 Score=12.23 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=10.3
Q ss_pred EEEEEEECCEEEEHH
Q ss_conf 068451056232005
Q 537021.9.peg.3 2 VRIIGHYDGLAVRST 16 (29)
Q Consensus 2 vriighydglavrst 16 (29)
+-|-|||.|.--|--
T Consensus 111 iliCGrYEGiDeRv~ 125 (171)
T 1oy5_A 111 MIICGRYEGVDERVK 125 (171)
T ss_dssp EEEECBTTCBCGGGG
T ss_pred EEEECCCCCHHHHHH
T ss_conf 999536325889987
No 4
>>2pv4_A Uncharacterized protein; YP_928494.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Shewanella amazonensis SB2B} (A:)
Probab=4.02 E-value=1.5e+02 Score=13.86 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=14.9
Q ss_pred ECCEEEEHHHHHHHHHHHHHCC
Q ss_conf 0562320057898999997309
Q 537021.9.peg.3 8 YDGLAVRSTAKVTQSCCRMLKK 29 (29)
Q Consensus 8 ydglavrstakvtqsccrmlkk 29 (29)
|+|.-.|-.-++-..|++-|||
T Consensus 107 ~~~~~~~l~D~~LKd~vKqLKK 128 (145)
T 2pv4_A 107 YSGLYVRVAEAALKESVKKLKK 128 (145)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998
No 5
>>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster} (A:)
Probab=3.96 E-value=2e+02 Score=13.26 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=8.5
Q ss_pred EEECCEEEEHHH
Q ss_conf 510562320057
Q 537021.9.peg.3 6 GHYDGLAVRSTA 17 (29)
Q Consensus 6 ghydglavrsta 17 (29)
.-|||...|+|.
T Consensus 65 n~ydg~elr~~t 76 (80)
T 2jz1_A 65 NIYDGGELRNTT 76 (80)
T ss_dssp SSCCSSTTCCSC
T ss_pred HCCCHHHHHHHH
T ss_conf 215427775102
No 6
>>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* (A:1-76)
Probab=3.92 E-value=3.7e+02 Score=11.98 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=13.6
Q ss_pred EEEEHHHHHHHHHHHHHC
Q ss_conf 232005789899999730
Q 537021.9.peg.3 11 LAVRSTAKVTQSCCRMLK 28 (29)
Q Consensus 11 lavrstakvtqsccrmlk 28 (29)
|+-.+-||....||.|.+
T Consensus 49 L~sN~QaK~VkDCa~MvR 66 (76)
T 2v9p_A 49 LATNSQAKHVKDCATMVR 66 (76)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHH
T ss_conf 861450879999999999
No 7
>>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} (A:202-358,A:572-619)
Probab=3.55 E-value=3e+02 Score=12.38 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=0.0
Q ss_pred EEECCEEEEH
Q ss_conf 5105623200
Q 537021.9.peg.3 6 GHYDGLAVRS 15 (29)
Q Consensus 6 ghydglavrs 15 (29)
|||.|-.+||
T Consensus 176 ~~~~~~~~~~ 185 (205)
T 2io8_A 176 GNYGGTCLRG 185 (205)
T ss_dssp TEEEEEEEEE
T ss_pred CEEEEEEEEC
T ss_conf 9987999952
No 8
>>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} (A:50-144)
Probab=3.42 E-value=3.6e+02 Score=12.00 Aligned_cols=8 Identities=63% Similarity=0.908 Sum_probs=0.0
Q ss_pred ECCEEEEH
Q ss_conf 05623200
Q 537021.9.peg.3 8 YDGLAVRS 15 (29)
Q Consensus 8 ydglavrs 15 (29)
.||.||++
T Consensus 7 mDGyAv~~ 14 (95)
T 1uz5_A 7 VDGYAVRA 14 (95)
T ss_dssp SSEEEECG
T ss_pred CCEEEEEC
T ss_conf 34379952
No 9
>>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} (P:)
Probab=3.31 E-value=3.7e+02 Score=11.95 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=0.0
Q ss_pred EECCEEEEH
Q ss_conf 105623200
Q 537021.9.peg.3 7 HYDGLAVRS 15 (29)
Q Consensus 7 hydglavrs 15 (29)
||.|+.+|+
T Consensus 68 hY~Gir~ra 76 (76)
T 1dp7_P 68 HYYGLRIKA 76 (76)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
T ss_conf 886478539
No 10
>>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* (A:70-139,A:228-319)
Probab=3.25 E-value=2.3e+02 Score=12.92 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=0.0
Q ss_pred EEEECCEEEEH
Q ss_conf 45105623200
Q 537021.9.peg.3 5 IGHYDGLAVRS 15 (29)
Q Consensus 5 ighydglavrs 15 (29)
+||-||+..|+
T Consensus 2 ~GqADGiq~RT 12 (162)
T 2dkh_A 2 LGQADGIACRT 12 (162)
T ss_dssp SCSCCEECHHH
T ss_pred CCCEEEECHHH
T ss_conf 88289988899
Done!