Query         537021.9.peg.36_1
Match_columns 29
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Sun May 22 14:49:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_36.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ir6a_ c.107.1.2 (A:) Exonucl   4.3 1.3E+02  0.0097   12.2   1.0   21    2-22     27-47  (385)
  2 d2pv4a1 a.286.1.1 (A:1-144) Un   3.7      68   0.005   13.6  -0.9   22    8-29    106-127 (144)
  3 d1zcca1 c.1.18.3 (A:1-240) Gly   3.3 1.7E+02   0.013   11.7   0.9   10    1-10      1-10  (240)
  4 d1l6ha_ a.52.1.1 (A:) Non-spec   3.0      92  0.0067   13.0  -0.8   15   14-28     16-30  (69)
  5 d1ws6a1 c.66.1.46 (A:15-185) M   2.9 1.5E+02   0.011   12.0   0.1   13    1-13      1-14  (171)
  6 d1tuka1 a.52.1.1 (A:1-67) Non-   2.8      73  0.0053   13.5  -1.5   14   15-28     16-29  (67)
  7 d1gpma3 d.52.2.1 (A:405-525) G   2.7      72  0.0053   13.5  -1.6   17   10-26      3-19  (121)
  8 d1oy5a_ c.116.1.4 (A:) tRNA(m1   2.5   2E+02   0.015   11.4   0.5   15    2-16    108-122 (232)
  9 d2sici_ d.84.1.1 (I:) Subtilis   2.3 1.6E+02   0.011   11.9  -0.3   22    2-23     74-95  (107)
 10 d1mrza2 c.26.1.3 (A:2-158) FMN   2.3 2.3E+02   0.017   11.0   1.1   10    2-11      1-10  (157)

No 1  
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}
Probab=4.32  E-value=1.3e+02  Score=12.21  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=14.3

Q ss_pred             EEEEEEECCEEEEHHHHHHHH
Q ss_conf             068451056232005789899
Q 537021.9.peg.3    2 VRIIGHYDGLAVRSTAKVTQS   22 (29)
Q Consensus         2 vriighydglavrstakvtqs   22 (29)
                      ++|+||||-=.+-||+-...-
T Consensus        27 I~I~gDyD~DGitS~aIl~~~   47 (385)
T d1ir6a_          27 IRVHGDYDADGLTGTAILVRG   47 (385)
T ss_dssp             EEEECCSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHH
T ss_conf             999927786067999999999


No 2  
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=3.68  E-value=68  Score=13.63  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=11.1

Q ss_pred             ECCEEEEHHHHHHHHHHHHHCC
Q ss_conf             0562320057898999997309
Q 537021.9.peg.3    8 YDGLAVRSTAKVTQSCCRMLKK   29 (29)
Q Consensus         8 ydglavrstakvtqsccrmlkk   29 (29)
                      |+|+-.|-.-..-..||+-|||
T Consensus       106 ~~~~~~rl~~~~lKd~~KqLKK  127 (144)
T d2pv4a1         106 YSGLYVRVAEAALKESVKKLKK  127 (144)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999998


No 3  
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.28  E-value=1.7e+02  Score=11.67  Aligned_cols=10  Identities=30%  Similarity=0.644  Sum_probs=6.4

Q ss_pred             CEEEEEEECC
Q ss_conf             9068451056
Q 537021.9.peg.3    1 MVRIIGHYDG   10 (29)
Q Consensus         1 mvriighydg   10 (29)
                      |.+||+|-.+
T Consensus         1 mt~iiaHRG~   10 (240)
T d1zcca1           1 MTKIVSHRGA   10 (240)
T ss_dssp             CCEEEETTTT
T ss_pred             CCEEEECCCC
T ss_conf             9889988999


No 4  
>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}
Probab=2.98  E-value=92  Score=12.99  Aligned_cols=15  Identities=33%  Similarity=0.744  Sum_probs=9.0

Q ss_pred             EHHHHHHHHHHHHHC
Q ss_conf             005789899999730
Q 537021.9.peg.3   14 RSTAKVTQSCCRMLK   28 (29)
Q Consensus        14 rstakvtqsccrmlk   28 (29)
                      -+.++-+..||..||
T Consensus        16 ~~g~~PS~~CC~kLk   30 (69)
T d1l6ha_          16 AGGARPTAACCSSLR   30 (69)
T ss_dssp             TTCCSTTHHHHHHHH
T ss_pred             HCCCCCCHHHHHHHH
T ss_conf             479998099999998


No 5  
>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}
Probab=2.85  E-value=1.5e+02  Score=11.98  Aligned_cols=13  Identities=46%  Similarity=0.866  Sum_probs=7.1

Q ss_pred             CEEEEE-EECCEEE
Q ss_conf             906845-1056232
Q 537021.9.peg.3    1 MVRIIG-HYDGLAV   13 (29)
Q Consensus         1 mvriig-hydglav   13 (29)
                      |+|||| .|-|...
T Consensus         1 ~~ri~~g~~kg~~l   14 (171)
T d1ws6a1           1 VVRILGGKARGVAL   14 (171)
T ss_dssp             CEECCSGGGTTCEE
T ss_pred             CEEEECCCCCCCEE
T ss_conf             97994644469882


No 6  
>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}
Probab=2.79  E-value=73  Score=13.48  Aligned_cols=14  Identities=43%  Similarity=0.764  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             05789899999730
Q 537021.9.peg.3   15 STAKVTQSCCRMLK   28 (29)
Q Consensus        15 stakvtqsccrmlk   28 (29)
                      +.++.+..||..||
T Consensus        16 ~g~~PS~~CC~kLk   29 (67)
T d1tuka1          16 SGAKPSGECCGNLR   29 (67)
T ss_dssp             HCCCCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHH
T ss_conf             69998599999898


No 7  
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=2.70  E-value=72  Score=13.50  Aligned_cols=17  Identities=35%  Similarity=0.731  Sum_probs=8.4

Q ss_pred             CEEEEHHHHHHHHHHHH
Q ss_conf             62320057898999997
Q 537021.9.peg.3   10 GLAVRSTAKVTQSCCRM   26 (29)
Q Consensus        10 glavrstakvtqsccrm   26 (29)
                      |||||--.++|+.....
T Consensus         3 GL~vRi~GevT~ekl~i   19 (121)
T d1gpma3           3 GLGVRVLGEVKKEYCDL   19 (121)
T ss_dssp             GGGGTBCSSCCHHHHHH
T ss_pred             CEEEEECCCCCHHHHHH
T ss_conf             51688768679999999


No 8  
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=2.51  E-value=2e+02  Score=11.35  Aligned_cols=15  Identities=33%  Similarity=0.663  Sum_probs=10.3

Q ss_pred             EEEEEEECCEEEEHH
Q ss_conf             068451056232005
Q 537021.9.peg.3    2 VRIIGHYDGLAVRST   16 (29)
Q Consensus         2 vriighydglavrst   16 (29)
                      +-|-|||.|.--|-.
T Consensus       108 iliCGRYEGiDeRv~  122 (232)
T d1oy5a_         108 MIICGRYEGVDERVK  122 (232)
T ss_dssp             EEEECBTTCBCGGGG
T ss_pred             EEEECCCCCHHHHHH
T ss_conf             999644104766751


No 9  
>d2sici_ d.84.1.1 (I:) Subtilisin inhibitor {Streptomyces albogriseolus, s-3253 [TaxId: 1887]}
Probab=2.33  E-value=1.6e+02  Score=11.87  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=14.6

Q ss_pred             EEEEEEECCEEEEHHHHHHHHH
Q ss_conf             0684510562320057898999
Q 537021.9.peg.3    2 VRIIGHYDGLAVRSTAKVTQSC   23 (29)
Q Consensus         2 vriighydglavrstakvtqsc   23 (29)
                      +++-|.++|-.|...-..+.+|
T Consensus        74 atv~G~w~G~~V~~~~tf~N~C   95 (107)
T d2sici_          74 LTVDGVWQGKRVSYERVFSNEC   95 (107)
T ss_dssp             EEEEEEETTEEEEEEEEESSHH
T ss_pred             EEEEEEECCEEEEEEEEECCCE
T ss_conf             9999999999986888836777


No 10 
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=2.29  E-value=2.3e+02  Score=11.05  Aligned_cols=10  Identities=50%  Similarity=0.880  Sum_probs=0.0

Q ss_pred             EEEEEEECCE
Q ss_conf             0684510562
Q 537021.9.peg.3    2 VRIIGHYDGL   11 (29)
Q Consensus         2 vriighydgl   11 (29)
                      |--||.+||+
T Consensus         1 VvtiG~FDGv   10 (157)
T d1mrza2           1 VVSIGVFDGV   10 (157)
T ss_dssp             CEEEECCTTC
T ss_pred             CEEEECCCCH
T ss_conf             9899726104


Done!