BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 537021.9.peg.36_1 (29 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|154252585|ref|YP_001413409.1| D-3-phosphoglycerate dehydrogenase [Parvibaculum lavamentivorans DS-1] gi|154156535|gb|ABS63752.1| D-3-phosphoglycerate dehydrogenase [Parvibaculum lavamentivorans DS-1] Length = 525 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 +++IIG YDGLA+RS KVT KK Sbjct: 36 LIKIIGDYDGLAIRSATKVTPPVLAAAKK 64 >gi|294850937|ref|ZP_06791613.1| phosphoglycerate dehydrogenase [Brucella sp. NVSL 07-0026] gi|294821580|gb|EFG38576.1| phosphoglycerate dehydrogenase [Brucella sp. NVSL 07-0026] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|260167901|ref|ZP_05754712.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. F5/99] gi|261757340|ref|ZP_06001049.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. F5/99] gi|261737324|gb|EEY25320.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. F5/99] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|256160401|ref|ZP_05458090.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M490/95/1] gi|265998770|ref|ZP_06111327.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M490/95/1] gi|262553459|gb|EEZ09228.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M490/95/1] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|256114254|ref|ZP_05454999.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 3 str. Ether] gi|265995559|ref|ZP_06108116.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 3 str. Ether] gi|262766843|gb|EEZ12461.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 3 str. Ether] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|254708700|ref|ZP_05170511.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis B2/94] gi|261316192|ref|ZP_05955389.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis B2/94] gi|261295415|gb|EEX98911.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis B2/94] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|254700347|ref|ZP_05162175.1| D-3-phosphoglycerate dehydrogenase [Brucella suis bv. 5 str. 513] gi|261750842|ref|ZP_05994551.1| D-3-phosphoglycerate dehydrogenase [Brucella suis bv. 5 str. 513] gi|261740595|gb|EEY28521.1| D-3-phosphoglycerate dehydrogenase [Brucella suis bv. 5 str. 513] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|237816063|ref|ZP_04595059.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus str. 2308 A] gi|237788726|gb|EEP62938.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus str. 2308 A] Length = 538 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 44 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 72 >gi|225853142|ref|YP_002733375.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis ATCC 23457] gi|256045296|ref|ZP_05448190.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 1 str. Rev.1] gi|256263367|ref|ZP_05465899.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|260565812|ref|ZP_05836295.1| aspartyl/glutamyl tRNA amidotransferase subunit C [Brucella melitensis bv. 1 str. 16M] gi|265991722|ref|ZP_06104279.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 1 str. Rev.1] gi|225641507|gb|ACO01421.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis ATCC 23457] gi|260151185|gb|EEW86280.1| aspartyl/glutamyl tRNA amidotransferase subunit C [Brucella melitensis bv. 1 str. 16M] gi|263002678|gb|EEZ15081.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 1 str. Rev.1] gi|263093365|gb|EEZ17434.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|326409698|gb|ADZ66763.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis M28] gi|326539406|gb|ADZ87621.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis M5-90] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|225628254|ref|ZP_03786288.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti str. Cudo] gi|225616100|gb|EEH13148.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti str. Cudo] Length = 538 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 44 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 72 >gi|23502543|ref|NP_698670.1| D-3-phosphoglycerate dehydrogenase [Brucella suis 1330] gi|148559678|ref|YP_001259539.1| D-3-phosphoglycerate dehydrogenase [Brucella ovis ATCC 25840] gi|161619616|ref|YP_001593503.1| D-3-phosphoglycerate dehydrogenase [Brucella canis ATCC 23365] gi|254703466|ref|ZP_05165294.1| D-3-phosphoglycerate dehydrogenase [Brucella suis bv. 3 str. 686] gi|254708447|ref|ZP_05170275.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis M163/99/10] gi|254714547|ref|ZP_05176358.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M644/93/1] gi|254717444|ref|ZP_05179255.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M13/05/1] gi|254719689|ref|ZP_05181500.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. 83/13] gi|256030226|ref|ZP_05443840.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis M292/94/1] gi|256061723|ref|ZP_05451860.1| D-3-phosphoglycerate dehydrogenase [Brucella neotomae 5K33] gi|256370095|ref|YP_003107606.1| D-3-phosphoglycerate dehydrogenase [Brucella microti CCM 4915] gi|260568773|ref|ZP_05839241.1| SerA family protein [Brucella suis bv. 4 str. 40] gi|261219276|ref|ZP_05933557.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M13/05/1] gi|261315946|ref|ZP_05955143.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis M163/99/10] gi|261322337|ref|ZP_05961534.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M644/93/1] gi|261325728|ref|ZP_05964925.1| phosphoglycerate dehydrogenase [Brucella neotomae 5K33] gi|261754095|ref|ZP_05997804.1| D-3-phosphoglycerate dehydrogenase [Brucella suis bv. 3 str. 686] gi|265984704|ref|ZP_06097439.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. 83/13] gi|265987255|ref|ZP_06099812.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis M292/94/1] gi|306837853|ref|ZP_07470715.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. NF 2653] gi|306841404|ref|ZP_07474106.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. BO2] gi|306844678|ref|ZP_07477263.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. BO1] gi|23348542|gb|AAN30585.1| D-3-phosphoglycerate dehydrogenase [Brucella suis 1330] gi|148370935|gb|ABQ60914.1| phosphoglycerate dehydrogenase [Brucella ovis ATCC 25840] gi|161336427|gb|ABX62732.1| D-3-phosphoglycerate dehydrogenase [Brucella canis ATCC 23365] gi|256000258|gb|ACU48657.1| D-3-phosphoglycerate dehydrogenase [Brucella microti CCM 4915] gi|260154157|gb|EEW89239.1| SerA family protein [Brucella suis bv. 4 str. 40] gi|260924365|gb|EEX90933.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M13/05/1] gi|261295027|gb|EEX98523.1| D-3-phosphoglycerate dehydrogenase [Brucella ceti M644/93/1] gi|261301708|gb|EEY05205.1| phosphoglycerate dehydrogenase [Brucella neotomae 5K33] gi|261304972|gb|EEY08469.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis M163/99/10] gi|261743848|gb|EEY31774.1| D-3-phosphoglycerate dehydrogenase [Brucella suis bv. 3 str. 686] gi|264659452|gb|EEZ29713.1| D-3-phosphoglycerate dehydrogenase [Brucella pinnipedialis M292/94/1] gi|264663296|gb|EEZ33557.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. 83/13] gi|306274850|gb|EFM56620.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. BO1] gi|306288510|gb|EFM59862.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. BO2] gi|306407092|gb|EFM63309.1| D-3-phosphoglycerate dehydrogenase [Brucella sp. NF 2653] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|17986632|ref|NP_539266.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|17982247|gb|AAL51530.1| d-3-phosphoglycerate dehydrogenase [Brucella melitensis bv. 1 str. 16M] Length = 538 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 44 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 72 >gi|62290557|ref|YP_222350.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 1 str. 9-941] gi|82700473|ref|YP_415047.1| D-3-phosphoglycerate dehydrogenase [Brucella melitensis biovar Abortus 2308] gi|189024778|ref|YP_001935546.1| SerA-1, D-3-phosphoglycerate dehydrogenase [Brucella abortus S19] gi|254689854|ref|ZP_05153108.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 6 str. 870] gi|254694347|ref|ZP_05156175.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 3 str. Tulya] gi|254698003|ref|ZP_05159831.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 2 str. 86/8/59] gi|254730889|ref|ZP_05189467.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 4 str. 292] gi|256258108|ref|ZP_05463644.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 9 str. C68] gi|260547197|ref|ZP_05822935.1| SerA family protein [Brucella abortus NCTC 8038] gi|260755386|ref|ZP_05867734.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 6 str. 870] gi|260758607|ref|ZP_05870955.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 4 str. 292] gi|260762439|ref|ZP_05874776.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 2 str. 86/8/59] gi|260884402|ref|ZP_05896016.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 9 str. C68] gi|261214655|ref|ZP_05928936.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 3 str. Tulya] gi|297248957|ref|ZP_06932665.1| phosphoglycerate dehydrogenase [Brucella abortus bv. 5 str. B3196] gi|62196689|gb|AAX74989.1| SerA-1, D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 1 str. 9-941] gi|82616574|emb|CAJ11653.1| ATP/GTP-binding site motif A (P-loop):Amino acid-binding ACT:D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain: [Brucella melitensis biovar Abortus 2308] gi|189020350|gb|ACD73072.1| SerA-1, D-3-phosphoglycerate dehydrogenase [Brucella abortus S19] gi|260095562|gb|EEW79440.1| SerA family protein [Brucella abortus NCTC 8038] gi|260668925|gb|EEX55865.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 4 str. 292] gi|260672865|gb|EEX59686.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 2 str. 86/8/59] gi|260675494|gb|EEX62315.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 6 str. 870] gi|260873930|gb|EEX80999.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 9 str. C68] gi|260916262|gb|EEX83123.1| D-3-phosphoglycerate dehydrogenase [Brucella abortus bv. 3 str. Tulya] gi|297174090|gb|EFH33447.1| phosphoglycerate dehydrogenase [Brucella abortus bv. 5 str. B3196] Length = 533 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 >gi|163845265|ref|YP_001622920.1| D-3-phosphoglycerate dehydrogenase [Brucella suis ATCC 23445] gi|163675988|gb|ABY40098.1| D-3-phosphoglycerate dehydrogenase [Brucella suis ATCC 23445] Length = 533 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 1 MVRIIGHYDGLAVRSTAKVTQSCCRMLKK 29 ++ +IG YDGLA+RS KVT+ KK Sbjct: 39 LLEVIGEYDGLAIRSATKVTEKLIAAAKK 67 Searching..................................................done ***** No hits found ****** Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.330 0.136 0.412 Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 527,049,525 Number of Sequences: 13984884 Number of extensions: 7744468 Number of successful extensions: 26050 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25969 Number of HSP's gapped (non-prelim): 81 length of query: 29 length of database: 4,792,584,752 effective HSP length: 4 effective length of query: 25 effective length of database: 4,736,645,216 effective search space: 118416130400 effective search space used: 118416130400 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 76 (33.8 bits)